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Applied Biochemistry and Microbiology

, Volume 54, Issue 2, pp 108–127 | Cite as

Stress Responses of Bacterial Cells as Mechanism of Development of Antibiotic Tolerance (Review)

  • A. G. Tkachenko
Article

Abstract

The defense mechanisms of bacterial cells against antibiotics, which induce specific complexes of adaptive reactions at the levels of replication, transcription, translation, and enzymatic activity, are reviewed. These adaptive reactions are conventionally considered to be stress responses. Specific stress responses are integrated in an adaptive network that is flexible in its reaction to environmental signals and capable of increasing antibiotic tolerance and maintaining the viability of bacterial cells in order to restart their growth once environmental conditions are again optimal. This facilitates the selection of mutations with high resistance to antibiotics. A prerequisite of efficient tools for the inhibition of such resistance is a profound knowledge of the mechanisms responsible for the development of physiological tolerance.

Keywords

bacteria stress adaptation antibiotics tolerance resistance 

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References

  1. 1.
    Waksman, S.A. and Woodruff, H.B., J. Bacteriol., 1940, vol. 40, no. 4, pp. 581–600.PubMedPubMedCentralGoogle Scholar
  2. 2.
    Goh, E.B., Yim, G., Tsui, W., McClure, J., Surette, M.G., and Davies, J., Proc. Natl. Acad. Sci. U. S. A., 2002, vol. 99, no. 26, pp. 17025–17030.PubMedPubMedCentralCrossRefGoogle Scholar
  3. 3.
    Bulgakova, V.G., Vinogradova, K.A., Orlova, T.I., Kozhevin, P.A., and Polin, A.N., Antibiot. Khimioter., 2014, vol. 59, nos 1-2, pp. 36–43.PubMedGoogle Scholar
  4. 4.
    Zablotni, A. and Jaworski, A., Postepy Hig. Med. Dosw. (Online), 2014, vol. 68, pp. 1040–1049. doi 10.5604/ 17322693.1119027CrossRefGoogle Scholar
  5. 5.
    Davies, J., Spiegelman, G.B., and Yim, G., Curr. Opin. Microbiol., 2006, vol. 9, no. 5, pp. 445–453.PubMedCrossRefGoogle Scholar
  6. 6.
    Lopez-Diazguerrero, N.E., Gonzalez, Puertos V.Y., Hernandez-Bautista, R.J., and Alarcon-Aguilar, A., Gac. Med. Mex., 2013, vol. 149, no. 4, pp. 438–447.PubMedGoogle Scholar
  7. 7.
    Calabrese, E.J., Intern. J. Mol. Sci., 2016, vol. 17, no. 12, p. 2034. doi 10.3390/ijms17122034CrossRefGoogle Scholar
  8. 8.
    Mathieu, A., Fleurier, S., Frenoy, A., Dairou, J., Bredeche, M.F., Sanchez-Vizuete, P., Song, X., and Matic, I., Cell Rep., 2016, vol. 17, no. 1, pp. 46–57.PubMedCrossRefGoogle Scholar
  9. 9.
    Fajardo, A. and Martìnez, J.L., Curr. Opin. Microbiol., 2008, vol. 11, no. 2, pp. 161–167.PubMedCrossRefGoogle Scholar
  10. 10.
    Ng, W.L., Kazmierczak, K.M., Robertson, G.T., Gilmour, R., and Winkler, M.E., J. Bacteriol., 2003, vol. 185, no. 1, pp. 359–370.PubMedPubMedCentralCrossRefGoogle Scholar
  11. 11.
    Martinez, J.L., F1000Res, 2017, vol. 6, no. 51, pp. 1–10. 10. 12688/f1000research.9685.1Google Scholar
  12. 12.
    Martin, J.F., Casqueiro, J., and Liras, P., Curr. Opin. Microbiol., 2005, vol. 8, no. 3, pp. 282–293.PubMedCrossRefGoogle Scholar
  13. 13.
    Alekshun, M.N. and Levy, S.B., Cell, 2007, vol. 128, no. 6, pp. 1037–1050.PubMedCrossRefGoogle Scholar
  14. 14.
    Pu, Y., Zhao, Z., Li, Y., Zou, J., Ma, Q., Zhao, Y., Ke, Y., Zhu, Y., Chen, H., Baker, MatthewA., Ge, H., Sun, Y., Xie Xiaoliang, S., and Bai, F., Mol. Cell, 2016, vol. 62, no. 2, pp. 284–294.PubMedPubMedCentralCrossRefGoogle Scholar
  15. 15.
    Miller, C., Thomsen, L.E., Gaggero, C., Mosseri, R., Ingmer, H., and Cohen, S.N., Science, 2004, vol. 305, no. 5690, pp. 1629–1631.PubMedCrossRefGoogle Scholar
  16. 16.
    Radeck, J., Fritz, G., and Mascher, T., Curr. Genet., 2017, vol. 63, no. 1, pp. 79–90.PubMedCrossRefGoogle Scholar
  17. 17.
    Diggle, S.P., Cornelis, P., Williams, P., and Camara, M., Int. J. Med. Microbiol., vol. 296, nos. 2–3, pp. 83–91.Google Scholar
  18. 18.
    Reuter, K., Steinbach, A., and Helms, V., Perspect. Med. Chem., 2016, vol. 8, pp. 1–15. doi 10.4137/ PMC.S13209Google Scholar
  19. 19.
    Gilles, B. and Tom, C., Curr. Pharm. Des., 2015, vol. 21, no. 1, pp. 5–11.Google Scholar
  20. 20.
    Abraham, W.-R., Antibiotics, 2016, vol. 5, no. 3, pp. 1–16.Google Scholar
  21. 21.
    Tkachenko, A.G., Molekulyarnye mekhanizmy stressornykh otvetov u mikroorganizmov (Molecular Mechanisms of Stress Responses in Microorganisms), Yekaterinburg: UrO RAN, 2012.Google Scholar
  22. 22.
    Lewis, K., Annu. Rev. Microbiol., 2010, vol. 64, no. 15, p.23.Google Scholar
  23. 23.
    Radzikowski, J.L., Schramke, H., and Heinemann, M., Curr. Opin. Biotechnol., 2017, vol. 46, no. 8, pp. 98–105.PubMedCrossRefGoogle Scholar
  24. 24.
    Brauner, A., Fridman, O., Gefen, O., and Balaban, N.Q., Nat. Rev. Microbiol., vol. 14, no. 5, pp. 320–330.Google Scholar
  25. 25.
    Levin-Reisman, I., Ronin, I., Gefen, O., Braniss, I., Shoresh, N., and Balaban, N.Q., Science, 2017, vol. 355, no. 6327, pp. 826–830.PubMedCrossRefGoogle Scholar
  26. 26.
    Zorraquino, V., Kim, M., Rai, N., and Tagkopoulos, I., Mol. Biol. Evol., 2017, vol. 34, no. 3, pp. 707–717.PubMedGoogle Scholar
  27. 27.
    Dragosits, M., Mozhayskiy, V., Quinones-Soto, S., Park, J., and Tagkopoulos, I., Mol. Syst. Biol., 2013, vol. 9, no. 643, pp. 1–13.Google Scholar
  28. 28.
    Tagkopoulos, I., Liu, Y.C., and Tavazoie, S., Science, 2008, vol. 320, no. 5881, pp. 1313–1317.PubMedPubMedCentralCrossRefGoogle Scholar
  29. 29.
    Mitchell, A., Romano, G.H., Groisman, B., Yona, A., Dekel, E., Kupiec, M., Dahan, O., and Pilpel, Y., Nature, 2009, vol. 460, no. 7252, pp. 220–224.PubMedCrossRefGoogle Scholar
  30. 30.
    Adler, C., Corbalan, N.S., Peralta, D.R., Pomares, M.F., de Cristobal, R.E., and Vincent, P.A., PLoS One, 2014, vol. 9, no. 1, p. e84734. doi 10.1371/ journal.pone.0084734PubMedPubMedCentralCrossRefGoogle Scholar
  31. 31.
    Storz, G. and Imlay, J.A., Curr. Opin. Microbiol., 1999, vol. 2, no. 2, pp. 188–194.PubMedCrossRefGoogle Scholar
  32. 32.
    Messner, K.R. and Imlay, J.A., J. Biol. Chem., 2002, vol. 277, no. 45, pp. 42563–42571.PubMedCrossRefGoogle Scholar
  33. 33.
    Imlay, J.A., Nat. Rev. Microbiol., 2013, vol. 11, no. 7, pp. 443–454.PubMedPubMedCentralCrossRefGoogle Scholar
  34. 34.
    Fu, H., Yuan, J., and Gao, H., Arch. Biochem. Biophys., 2015, vol. 584, no. 10, pp. 28–35.PubMedCrossRefGoogle Scholar
  35. 35.
    Rolfe, M.D., Ocone, A., Stapleton, M.R., Hall, S., Trotter, E.W., Poole, R.K., Sanguinetti, G., and Green, J., Open Biol., 2012, vol. 2, no. 7, p. 120091. doi 10.1098/rsob.120091PubMedPubMedCentralCrossRefGoogle Scholar
  36. 36.
    Duval, V. and Lister, I.M., Int. J. Biotechnol. Wellness Ind., 2013, vol. 2, no. 3, pp. 101–124.PubMedPubMedCentralGoogle Scholar
  37. 37.
    Poole, K., J. Antimicrob. Chemother., 2012, vol. 67, no. 9, pp. 2069–2089.PubMedCrossRefGoogle Scholar
  38. 38.
    Martin, R.G., Gillette, W.K., Rhee, S., and Rosner, J.L., Mol. Microbiol., 1999, vol. 34, no. 3, pp. 431–441.PubMedCrossRefGoogle Scholar
  39. 39.
    Barbosa, T.M. and Levy, S.B., J. Bacteriol., 2000, vol. 182, no. 12, pp. 3467–3474.PubMedPubMedCentralCrossRefGoogle Scholar
  40. 40.
    Imlay, J.A., Annu. Rev. Biochem., 2008, vol. 77, no. 1, pp. 755–776.PubMedPubMedCentralCrossRefGoogle Scholar
  41. 41.
    Wang, T., El Meouche, I., and Dunlop, M.J., Sci. Rep., 2017, vol. 7, no. 43839, pp. 1–7.PubMedPubMedCentralGoogle Scholar
  42. 42.
    Kohanski, M.A., DePristo, M.A., and Collins, J.J., Mol. Cell, 2010, vol. 37, no. 3, pp. 311–320.PubMedPubMedCentralCrossRefGoogle Scholar
  43. 43.
    Dwyer, D.J., Kohanski, M.A., and Collins, J.J., Curr. Opin. Microbiol., 2009, vol. 12, no. 5, pp. 482–489.PubMedPubMedCentralCrossRefGoogle Scholar
  44. 44.
    Kohanski, M.A., Dwyer, D.J., Hayete, B., Lawrence, C.A., and Collins, J.J., Cell, 2007, vol. 130, no. 5, pp. 797–810.PubMedCrossRefGoogle Scholar
  45. 45.
    Burger, R.M. and Drlica, K., J. Inorg. Biochem., 2009, vol. 103, no. 9, pp. 1273–1277.PubMedPubMedCentralCrossRefGoogle Scholar
  46. 46.
    Tkachenko, A.G., Akhova, A.V., Shumkov, M.S., and Nesterova, L.Y., Res. Microbiol., 2012, vol. 163, no. 2, pp. 83–91.PubMedCrossRefGoogle Scholar
  47. 47.
    Akhova, A.V. and Tkachenko, A.G., FEMS Microbiol. Letts., 2014, vol. 353, no. 1, pp. 69–76.CrossRefGoogle Scholar
  48. 48.
    Tkachenko, A., Nesterova, L., and Pshenichnov, M., Arch. Microbiol., 2001, vol. 176, nos. 1–2, pp. 155–157.PubMedCrossRefGoogle Scholar
  49. 49.
    Tkachenko, A.G., Shumkov, M.S., and Akhova, A.V., Microbiology (Moscow), 2009, vol. 78, no. 1, pp. 25–31.CrossRefGoogle Scholar
  50. 50.
    Tkachenko, A.G., Pozhidaeva, O.N., and Shumkov, M.S., Biochemistry (Moscow), 2006, vol. 71, pp. 1042–1049.PubMedGoogle Scholar
  51. 51.
    Tkachenko, A.G., Biochemistry (Moscow), 2004, vol. 69, no. 2, pp. 188–194.PubMedGoogle Scholar
  52. 52.
    Levitt, M.D., N. Engl. J. Med., 1970, vol. 282, no. 18, pp. 1039–1040.Google Scholar
  53. 53.
    Bekker, M., Alexeeva, S., Laan, W., Sawers, G., Teixeira de Mattos, J., and Hellingwerf, K., J. Bacteriol., 2010, vol. 192, no. 3, pp. 746–754.PubMedCrossRefGoogle Scholar
  54. 54.
    Malpica, R., Sandoval, G.R.P., Rodriguez, C., Franco, B., and Georgellis, D., Antioxid. Red. Signal., 2006, vol. 8, nos. 5–6, pp. 781–795.CrossRefGoogle Scholar
  55. 55.
    Henkel, S.G., Ter, BeekA., Steinsiek, S., Stagge, S., Bettenbrock, K., de Mattos, M.J., Sauter, T., Sawodny, O., and Ederer, M., PLoS One, 2014, vol. 9, no. 9, p. e107640. doi 10.1371/journal.pone.0107640PubMedPubMedCentralCrossRefGoogle Scholar
  56. 56.
    Perrenoud, A. and Sauer, U., J. Bacteriol., 2005, vol. 187, no. 9, pp. 3171–3179.PubMedPubMedCentralCrossRefGoogle Scholar
  57. 57.
    Unden, G. and Bongaerts, J., Biochim. Biophys. Acta, 1997, vol. 1320, no. 3, pp. 217–234.PubMedCrossRefGoogle Scholar
  58. 58.
    Unden, G., Steinmetz, P.A., and Degreif-Dunnwald, P., EcoSal. Plus, 2014, vol. 6, no. 1, pp. 1–37. doi 10.1128/ecosalplus.ESP-0005-2013CrossRefGoogle Scholar
  59. 59.
    Georgellis, D., Kwon, O., and Lin, E.C., J. Biol. Chem., 1999, vol. 274, no. 50, pp. 35950–35954.PubMedCrossRefGoogle Scholar
  60. 60.
    Rodriguez, C., Kwon, O., and Georgellis, D., J. Bacteriol., 2004, vol. 186, no. 7, pp. 2085–2090.PubMedPubMedCentralCrossRefGoogle Scholar
  61. 61.
    Vemuri, G.N., Altman, E., Sangurdekar, D.P., Khodursky, A.B., and Eiteman, M.A., Appl. Environ. Microbiol., 2006, vol. 72, no. 5, pp. 3653–3661.PubMedPubMedCentralCrossRefGoogle Scholar
  62. 62.
    Holm, A.K., Blank, L.M., Oldiges, M., Schmid, A., Solem, C., Jensen, P.R., and Vemuri, G.N., J. Biol. Chem., 2010, vol. 285, no. 23, pp. 17498–17506.PubMedPubMedCentralCrossRefGoogle Scholar
  63. 63.
    Chapman, A.G. and Atkinson, D.E., Adv. Microb. Physiol., 1977, vol. 15, pp. 253–306.PubMedCrossRefGoogle Scholar
  64. 64.
    Atkinson, D.E. and Chapman, A.G., Methods Enzymol., 1979, vol. 55, pp. 229–235.PubMedCrossRefGoogle Scholar
  65. 65.
    Feniouk, B.A., Suzuki, T., and Yoshida, M., J. Biol. Chem., 2007, vol. 282, no. 1, pp. 764–772.PubMedCrossRefGoogle Scholar
  66. 66.
    Nakanishi-Matsui, M., Sekiya, M., and Futai, M., Biochim. Biophys. Acta, 2016, vol. 1857, no. 2, pp. 129–140.PubMedCrossRefGoogle Scholar
  67. 67.
    Tkachenko, A.G., Salakhetdinova, O.Ya., and Pshenichnov, M.R., Microbiology (Moscow), 1996, vol. 66, no. 6, pp. 644–648.Google Scholar
  68. 68.
    Tkachenko, A.G. and Chudinov, A.A., Dokl. Akad. Nauk SSSR, 1989, no. 305, pp. 219–222.PubMedGoogle Scholar
  69. 69.
    Chiaramello, A.E. and Zyskind, J.W., J. Bacteriol., 1990, vol. 172, no. 4, pp. 2013–2019.PubMedPubMedCentralCrossRefGoogle Scholar
  70. 70.
    Hauryliuk, V., Atkinson, G.C., Murakami, K.S., Tenson, T., and Gerdes, K., Nat. Rev. Microbiol., 2015, vol. 13, no. 5, pp. 298–309.PubMedPubMedCentralCrossRefGoogle Scholar
  71. 71.
    Dukan, S., Farewell, A., Ballesteros, M., Taddei, F., Radman, M., and Nystrom, T., Proc. Natl. Acad. Sci. U. S. A., 2000, vol. 97, no. 11, pp. 5746–5749.PubMedPubMedCentralCrossRefGoogle Scholar
  72. 72.
    Nystrom, T., Curr. Opin. Microbiol., 2003, vol. 5, no. 6, pp. 596–601.CrossRefGoogle Scholar
  73. 73.
    Fredriksson, A., Ballesteros, M., Dukan, S., and Nystrom, T., Mol. Microbiol., 2006, vol. 59, no. 1, pp. 350–359.PubMedCrossRefGoogle Scholar
  74. 74.
    Belenky, P., Ye, J.D., Porter, C.B., Cohen, N.R., Lobritz, M.A., Ferrante, T., Jain, S., Korry, B.J., Schwarz, E.G., Walker, G.C., and Collins, J.J., Cell Rep., 2015, vol. 13, no. 5, pp. 968–980.PubMedPubMedCentralCrossRefGoogle Scholar
  75. 75.
    Dwyer, D.J., Belenky, P.A., Yang, J.H., Macdonald, I.C., Martell, J.D., Takahashi, N., Chan, C.T., Lobritz, M.A., Braff, D., Schwarz, E.G., Ye, J.D., Pati, M., Vercruysse, M., Ralifo, P.S., Allison, K.R., Khalil, A.S., Ting, A.Y., Walker, G.C., and Collins, J.J., Natl. Acad. Sci. U. S. A., 2014, vol. 111, no. 20, pp. E2100–E2109.CrossRefGoogle Scholar
  76. 76.
    Dwyer, D.J., Collins, J.J., and Walker, G.C., Annu. Rev. Pharmacol. Toxicol., 2015, vol. 55, pp. 313–332.PubMedCrossRefGoogle Scholar
  77. 77.
    Imlay, J.A., Curr. Opin. Microbiol., 2015, vol. 24, pp. 124–131.PubMedPubMedCentralCrossRefGoogle Scholar
  78. 78.
    Mosel, M., Li, L., Drlica, K., and Zhao, X., Antimicrob. Agent. Chemother., 2013, vol. 57, no. 11, pp. 5755–5759.CrossRefGoogle Scholar
  79. 79.
    Dwyer, D.J., Collins, J.J., and Walker, G.C., Annu. Rev. Pharmacol. Toxicol., 2015, vol. 55, no. 1, pp. 313–332.PubMedCrossRefGoogle Scholar
  80. 80.
    Wu, Y., Vulic, M., Keren, I., and Lewis, K., Antimicrob. Agent. Chemother., 2012, vol. 56, no. 9, pp. 4922–4926.CrossRefGoogle Scholar
  81. 81.
    Vega, N.M., Allison, K.R., Khalil, A.S., and Collins, J.J., Nat. Chem. Biol., 2012, vol. 8, no. 5, pp. 431–433.PubMedPubMedCentralCrossRefGoogle Scholar
  82. 82.
    Liu, K., Bittner, A.N., and Wang, J.D., Curr. Opin. Microbiol., 2015, vol. 24, pp. 72–79.PubMedPubMedCentralCrossRefGoogle Scholar
  83. 83.
    Brown, A., Fernandez, I.S., Gordiyenko, Y., and Ramakrishnan, V., Nature, 2016, vol. 534, no. 7606, pp. 277–280.PubMedPubMedCentralCrossRefGoogle Scholar
  84. 84.
    Teich, A., Meyer, S., Lin, H.Y., Andersson, L., Enfors, S.O., and Neubauer, P., Biotechnol. Progr., 1999, vol. 15, no. 1, pp. 123–129.CrossRefGoogle Scholar
  85. 85.
    Chang, D.E., Smalley, D.J., and Conway, T., Mol. Microbiol., 2002, vol. 45, no. 2, pp. 289–306.PubMedCrossRefGoogle Scholar
  86. 86.
    Traxler, M.F., Chang, D.E., and Conway, T., Proc. Nat. Acad. Sci. U. S. A., 2006, vol. 103, no. 7, pp. 2374–2379.CrossRefGoogle Scholar
  87. 87.
    Traxler, M.F., Summers, S.M., Nguyen, H.T., Zacharia, V.M., Hightower, G.A., Smith, J.T., and Conway, T., Mol. Microbiol., 2008, vol. 68, no. 5, pp. 1128–1148.PubMedPubMedCentralCrossRefGoogle Scholar
  88. 88.
    Potrykus, K. and Cashel, M., Annu. Rev. Microbiol., 2008, vol. 62, no. 1, pp. 35–51.PubMedCrossRefGoogle Scholar
  89. 89.
    Battesti, A. and Bouveret, E., J. Bacteriol., 2009, vol. 191, no. 2, pp. 616–624.PubMedCrossRefGoogle Scholar
  90. 90.
    Potrykus, K., Murphy, H., Philippe, N., and Cashel, M., Environ. Microbiol., 2011, vol. 13, no. 3, pp. 563–575.PubMedCrossRefGoogle Scholar
  91. 91.
    Xiao, H., Kalman, M., Ikehara, K., Zemel, S., Glaser, G., and Cashel, M., J. Biol. Chem., 1991, vol. 266, no. 9, pp. 5980–5990.PubMedGoogle Scholar
  92. 92.
    Durfee, T., Hansen, A.M., Zhi, H., Blattner, F.R., and Jin, D.J., J. Bacteriol., 2008, vol. 190, no. 3, pp. 1084–1096.PubMedCrossRefGoogle Scholar
  93. 93.
    Atkinson, G.C., Tenson, T., and Hauryliuk, V., PLoS One, 2011, vol. 6, no. 8, p. e23479. doi 10.1371/journal. pone.0023479PubMedPubMedCentralCrossRefGoogle Scholar
  94. 94.
    Jiang, M., Sullivan, S.M., Wout, P.K., and Maddock, J.R., J. Bacteriol., 2007, vol. 189, no. 17, pp. 6140–6147.PubMedPubMedCentralCrossRefGoogle Scholar
  95. 95.
    Arenz, S., Abdelshahid, M., Sohmen, D., Payoe, R., Starosta, A.L., Berninghausen, O., Hauryliuk, V., Beckmann, R., and Wilson, D.N., Nucleic Acids Res., 2016, vol. 44, no. 13, pp. 6471–6481.PubMedPubMedCentralCrossRefGoogle Scholar
  96. 96.
    Mechold, U., Potrykus, K., Murphy, H., Murakami, K.S., and Cashel, M., Nucleic. Acid. Res., 2013, vol. 41, no. 12, pp. 6175–6189.PubMedPubMedCentralCrossRefGoogle Scholar
  97. 97.
    Zuo, Y., Wang, Y., and Steitz, T.A., Mol. Cell, 2013, vol. 50, no. 3, pp. 430–436.PubMedPubMedCentralCrossRefGoogle Scholar
  98. 98.
    Milon, P., Tischenko, E., Tomsic, J., Caserta, E., Folkers, G., La Teana, A., Rodnina, M.V., Pon, C.L., Boelens, R., and Gualerzi, C.O., Proc. Natl. Acad. Sci. U. S. A., 2006, vol. 103, no. 38, pp. 13962–13967.PubMedPubMedCentralCrossRefGoogle Scholar
  99. 99.
    Mitkevich, V.A., Ermakov, A., Kulikova, A.A., Tankov, S., Shyp, V., Soosaar, A., Tenson, T., Makarov, A.A., Ehrenberg, M., and Hauryliuk, V., J. Mol. Biol., 2010, vol. 402, no. 5, pp. 838–846.PubMedCrossRefGoogle Scholar
  100. 100.
    Corrigan, R.M., Bellows, L.E., Wood, A., and Grundling, A., Proc. Natl. Acad. Sci. U. S. A., 2016, vol. 113, no. 12, pp. E1710–E1719.PubMedPubMedCentralCrossRefGoogle Scholar
  101. 101.
    Wang, J.D., Sanders, G.M., and Grossman, A.D., Cell, 2007, vol. 128, no. 5, pp. 865–875.PubMedPubMedCentralCrossRefGoogle Scholar
  102. 102.
    Nazir, A. and Harinarayanan, R., J. Biosci., 2016, vol. 41, no. 2, pp. 277–282.PubMedCrossRefGoogle Scholar
  103. 103.
    Jin, D.J., Cagliero, C., and Zhou, Y.N., FEMS Microbiol. Rev., 2012, vol. 36, no. 2, pp. 269–287.PubMedCrossRefGoogle Scholar
  104. 104.
    Harms, A., Maisonneuve, E., and Gerdes, K., Science, 2016, vol. 354, no. 6318.Google Scholar
  105. 105.
    Shyp, V., Tankov, S., Ermakov, A., Kudrin, P., English, B.P., Ehrenberg, M., Tenson, T., Elf, J., and Hauryliuk, V., EMBO Rep., 2012, vol. 13, no. 9, pp. 835–839.PubMedPubMedCentralCrossRefGoogle Scholar
  106. 106.
    Krasny, L. and Gourse, R.L., EMBO J., 2004, vol. 23, no. 22, pp. 4473–4483.PubMedPubMedCentralCrossRefGoogle Scholar
  107. 107.
    Bremer, H. and Dennis, P., Biochimie, 2008, vol. 90, no. 3, pp. 493–499.PubMedCrossRefGoogle Scholar
  108. 108.
    Fredriksson, A. and Nystrom, T., Curr. Opin. Microbiol., 2006, vol. 9, no. 6, pp. 612–618.PubMedCrossRefGoogle Scholar
  109. 109.
    Fredriksson, A., Ballesteros, M., Peterson, C.N., Persson, O., Silhavy, T.J., and Nystrom, T., Genes Dev., 2007, vol. 21, no. 7, pp. 862–874.PubMedPubMedCentralCrossRefGoogle Scholar
  110. 110.
    Starosta, A.L., Lassak, J., Jung, K., and Wilson, D.N., FEMS Microbiol. Rev., 2014, vol. 38, no. 6, pp. 1172–1201.PubMedPubMedCentralCrossRefGoogle Scholar
  111. 111.
    Vinella, D., Albrecht, C., Cashel, M., and D’Ari, R., Mol. Microbiol., 2005, vol. 56, no. 4, pp. 958–970.PubMedCrossRefGoogle Scholar
  112. 112.
    Ramisetty, B.C., Natarajan, B., and Santhosh, R.S., Crit. Rev. Microbiol., 2015, vol. 41, no. 1, pp. 89–100.PubMedCrossRefGoogle Scholar
  113. 113.
    Murray, D.K. and Bremer, H., J. Mol. Biol., 1996, vol. 259, no. 1, pp. 41–57.PubMedCrossRefGoogle Scholar
  114. 114.
    Seyfzadeh, M., Keener, J., and Nomura, M., Proc. Natl. Acad. Sci. U. S. A., 1993, vol. 90, pp. 11004–11008.PubMedPubMedCentralCrossRefGoogle Scholar
  115. 115.
    Spira, B., Silberstein, N., and Yagil, E., J. Bacteriol., 1995, vol. 177, no. 14, pp. 4053–4058.PubMedPubMedCentralCrossRefGoogle Scholar
  116. 116.
    Abranches, J., Martinez, A.R., Kajfasz, J.K., Chavez, V., Garsin, D.A., and Lemos, J.A., J. Bacteriol., 2009, vol. 191, no. 7, pp. 2248–2256.PubMedPubMedCentralCrossRefGoogle Scholar
  117. 117.
    Greenway, D.L.A. and England, R.R., Lett. Appl. Microbiol., 1999, vol. 29, no. 5, pp. 323–326.PubMedCrossRefGoogle Scholar
  118. 118.
    Neidhardt, F.C., Proc. Natl. Acad. Sci. U. S. A., 1990, vol. 87, no. 15, pp. 5589–5593.PubMedPubMedCentralCrossRefGoogle Scholar
  119. 119.
    Amato, S.M., Fazen, C.H., Henry, T.C., Mok, W.W., Orman, M.A., Sandvik, E.L., Volzing, K.G., and Brynildsen, M.P., Front. Microbiol., 2014, vol. 5, pp. 1–9.CrossRefGoogle Scholar
  120. 120.
    Ehrenberg, M., Bremer, H., and Dennis, P.P., Biochimie, 2013, vol. 95, no. 4, pp. 643–658.PubMedCrossRefGoogle Scholar
  121. 121.
    Kudrin, P., Varik, V., Oliveira, S.R., Beljantseva, J., Del Peso, SantosT., Dzhygyr, I., Rejman, D., Cava, F., Tenson, T., and Hauryliuk, V., Antimicrob. Agents Chemother., 2017, vol. 61, no. 4, pp. 1–17.CrossRefGoogle Scholar
  122. 122.
    Nguyen, F., Starosta, A.L., Arenz, S., Sohmen, D., Donhofer, A., and Wilson, D.N., Biol. Chem., 2014, vol. 395, no. 5, pp. 559–575.PubMedCrossRefGoogle Scholar
  123. 123.
    Verstraeten, N., Knapen, W.J., Kint, C.I., Liebens, V., Bergh, B., Dewachter, L., Michiels, J.E., Fu, Q., David, C.C., Fierro, A.C., Marchal, K., Beirlant, J., Versees, W., Hofkens, J., Jansen, M., Fauvart, M., and Michiels, J., Mol. Cell, 2015, vol. 59, no. 1, pp. 9–21.PubMedCrossRefGoogle Scholar
  124. 124.
    Tenson, T. and Mankin, A., Mol. Microbiol., 2006, vol. 59, no. 6, pp. 1664–1677.PubMedCrossRefGoogle Scholar
  125. 125.
    Ogle, J.M. and Ramakrishnan, V., Annu. Rev. Biochem., 2005, vol. 74, no. 1, pp. 129–177.PubMedCrossRefGoogle Scholar
  126. 126.
    Loveland, A.B., Bah, E., Madireddy, R., Zhang, Y., Brilot, A.F., Grigorieff, N., and Korostelev, A.A., Elife, 2016, vol. 5, no. 9, pp. 1–23.Google Scholar
  127. 127.
    Ballesteros, M., Fredriksson, A., Henriksson, J., and Nystrom, T., Mol. Microbiol., 2001, vol. 20, no. 18, pp. 5280–5289.Google Scholar
  128. 128.
    Igarashi, K. and Kashiwagi, K., Int. J. Biochem. Cell Biol., 2010, vol. 42, no. 1, pp. 39–51.PubMedCrossRefGoogle Scholar
  129. 129.
    Terui, Y., Akiyama, M., Sakamoto, A., Tomitori, H., Yamamoto, K., Ishihama, A., Igarashi, K., and Kashiwagi, K., Int. J. Biochem. Cell Biol., 2012, vol. 44, no. 2, pp. 412–422.PubMedCrossRefGoogle Scholar
  130. 130.
    Tkachenko, A.G. and Shumkov, M.S., Biochemistry (Moscow), 2004, vol. 69, no. 8, pp. 876–882.PubMedGoogle Scholar
  131. 131.
    Tkachenko, A.G., Kashevarova, N.M., Tyuleneva, E.A., and Shumkov, M.S., FEMS Microbiol. Letts., 2017, vol. 364, no. 9, pp. 1–9. doi 10.1093/femsle/fnx084CrossRefGoogle Scholar
  132. 132.
    Tkachenko, A.G., Kashevarova, N.M., Karavaeva, E.A., and Shumkov, M.S., FEMS Microbiol. Letts., 2014, vol. 361, no. 7, pp. 25–33. doi 10.1111/ 1574-6968.12613CrossRefGoogle Scholar
  133. 133.
    Ramu, H., Mankin, A., and Vazquez-Laslop, N., Mol. Microbiol., 2009, vol. 71, no. 4, pp. 811–824.PubMedCrossRefGoogle Scholar
  134. 134.
    Vazquez-Laslop, N., Ramu, H., Klepacki, D., Kannan, K., and Mankin, A.S., EMBO J., 2010, vol. 29, no. 18, pp. 3108–3117.PubMedPubMedCentralCrossRefGoogle Scholar
  135. 135.
    Gupta, P., Liu, B., Klepacki, D., Gupta, V., Schulten, K., Mankin, A.S., and Vazquez-Laslop, N., Nat. Chem. Biol., 2016, vol. 12, no. 3, pp. 153–158.PubMedPubMedCentralCrossRefGoogle Scholar
  136. 136.
    Weisblum, B., Antimicrob. Agents Chemother., 1995, vol. 39, no. 3, pp. 577–585.PubMedPubMedCentralCrossRefGoogle Scholar
  137. 137.
    Min, Y.H., Kwon, A.R., Yoon, E.J., Shim, M.J., and Choi, E.C., Antimicrob. Agents Chemother., 2008, vol. 52, no. 5, pp. 1782–1789.PubMedPubMedCentralCrossRefGoogle Scholar
  138. 138.
    Tu, D., Blaha, G., Moore, P.B., and Steitz, T.A., Cell, 2005, vol. 121, no. 2, pp. 257–270.PubMedCrossRefGoogle Scholar
  139. 139.
    Schlunzen, F., Zarivach, R., Harms, J., Bashan, A., Tocilj, A., Albrecht, R., Yonath, A., and Franceschi, F., Nature, 2001, vol. 413, no. 6858, pp. 814–821.PubMedCrossRefGoogle Scholar
  140. 140.
    Schmitt, E., Galimand, M., Panvert, M., Courvalin, P., and Mechulam, Y., J. Mol. Biol., 2009, vol. 388, no. 3, pp. 570–582.PubMedCrossRefGoogle Scholar
  141. 141.
    Jana, S. and Deb, J.K., Appl. Microbiol. Biotechnol., 2006, vol. 70, no. 2, pp. 140–150.PubMedCrossRefGoogle Scholar
  142. 142.
    Vinella, D., D’Ari, R., Jaffe, A., and Bouloc, P., EMBO J., 1992, vol. 11, no. 4, pp. 1493–1501.PubMedPubMedCentralGoogle Scholar
  143. 143.
    Kaldalu, N., Mei, R., and Lewis, K., Antimicrob. Agents Chemother., 2004, vol. 48, no. 3, pp. 890–896.PubMedPubMedCentralCrossRefGoogle Scholar
  144. 144.
    Costanzo, A. and Ades, S.E., J. Bacteriol., 2006, vol. 188, no. 13, pp. 4627–4634.PubMedPubMedCentralCrossRefGoogle Scholar
  145. 145.
    Amato, S.M. and Brynildsen, M.P., Curr. Biol., 2015, vol. 25, no. 16, pp. 2090–2098.PubMedCrossRefGoogle Scholar
  146. 146.
    Piskunova, J., Maisonneuve, E., Germain, E., Gerdes, K., and Severinov, K., Mol. Microbiol., 2017, vol. 104, no. 3, pp. 463–471.PubMedCrossRefGoogle Scholar
  147. 147.
    Pomares, M.F., Vincent, P.A., Farias, R.N., and Salomon, R.A., J. Bacteriol., 2008, vol. 190, no. 12, pp. 4328–4334.PubMedPubMedCentralCrossRefGoogle Scholar
  148. 148.
    Viducic, D., Ono, T., Murakami, K., Susilowati, H., Kayama, S., Hirota, K., and Miyake, Y., Microbiol. Immunol., 2006, vol. 50, no. 4, pp. 349–357.PubMedCrossRefGoogle Scholar
  149. 149.
    Foti, J.J., Schienda, J., Sutera, V.A., and Lovett, S.T., Mol. Cell, 2005, vol. 17, no. 4, pp. 549–560.PubMedCrossRefGoogle Scholar
  150. 150.
    Fung, D.K.C., Chan, E.W.C., Chin, M.L., and Chan, R.C.Y., Antimicrob. Agents Chemother., 2010, vol. 54, no. 3, pp. 1082–1093.PubMedPubMedCentralCrossRefGoogle Scholar
  151. 151.
    Butala, M., Zgur-Bertok, D., and Busby, S.J., Cell Mol. Life. Sci., 2009, vol. 66, no. 1, pp. 82–93.PubMedCrossRefGoogle Scholar
  152. 152.
    Unoson, C. and Wagner, E.G.H., Mol. Microbiol., 2008, vol. 70, no. 1, pp. 258–270.PubMedCrossRefGoogle Scholar
  153. 153.
    Noor, R., Murata, M., and Yamada, M., J. Mol. Microbiol. Biotechnol., 2009, vol. 17, no. 9, pp. 177–187.PubMedCrossRefGoogle Scholar
  154. 154.
    Cheng, G., Hao, H., Dai, M., Liu, Z., and Yuan, Z., Eur. J. Med. Chem., 2013, vol. 66, no. 8, pp. 555–562.PubMedCrossRefGoogle Scholar
  155. 155.
    Blazquez, J., Couce, A., Rodriguez-Beltran, J., and Rodriguez-Rojas, A., Curr. Opin. Microbiol., 2012, vol. 15, no. 5, pp. 561–569.PubMedCrossRefGoogle Scholar
  156. 156.
    Little, J.W., Regulation of Gene Expression in Escherichia coli, Lin, E.C. and Lynch, A.S., Eds., Georgetown: R.G. Landes Co., 1996, pp. 453–479.Google Scholar
  157. 157.
    Baharoglu, Z. and Mazel, D., FEMS Microbiol. Rev., 2014, vol. 38, no. 6, pp. 1126–1145.PubMedCrossRefGoogle Scholar
  158. 158.
    Courcelle, J., Khodursky, A., Peter, B., Brown, P.O., and Hanawalt, P.C., Genetics, 2001, vol. 158, no. 1, pp. 41–64.PubMedPubMedCentralGoogle Scholar
  159. 159.
    Erill, I., Campoy, S., and Barbe, J., FEMS Microbiol. Rev., 2007, vol. 31, no. 6, pp. 637–656.PubMedCrossRefGoogle Scholar
  160. 160.
    Rastogi, R.P., Richa, KumarA., Tyagi, M.B., and Sinha, R.P., J. Nucleic Acids, 2010, vol. 2010, no. 12, p. 592980. doi 10.4061/2010/592980PubMedPubMedCentralGoogle Scholar
  161. 161.
    Mukherjee, A., Cao, C., and Lutkenhaus, J., Proc. Natl. Acad. Sci. U. S. A., 1998, vol. 95, no. 6, pp. 2885–2890.PubMedPubMedCentralCrossRefGoogle Scholar
  162. 162.
    Kim, H.K. and Harshey, R.M., MBio, 2016, vol. 7, no. 4. doi 10.1128/mBio.00822-1610.1128/ mBio.00822-16Google Scholar
  163. 163.
    Jonas, K., Curr. Opin. Microbiol., 2014, vol. 18, no. 4, pp. 54–60.PubMedCrossRefGoogle Scholar
  164. 164.
    Drlica, K., Malik, M., Kerns, R.J., and Zhao, X., Antimicrob. Agents Chemother., 2008, vol. 52, no. 2, pp. 385–392.PubMedCrossRefGoogle Scholar
  165. 165.
    Malik, M., Mustaev, A., Schwanz, H.A., Luan, G., Shah, N., Oppegard, L.M., de Souza, E.C., Hiasa, H., Zhao, X., Kerns, R.J., and Drlica, K., Nucleic Acids Res., 2016, vol. 44, no. 7, pp. 3304–3316.PubMedPubMedCentralCrossRefGoogle Scholar
  166. 166.
    Mustaev, A., Malik, M., Zhao, X., Kurepina, N., Luan, G., Oppegard, L.M., Hiasa, H., Marks, K.R., Kerns, R.J., Berger, J.M., and Drlica, K., J. Biol. Chem., 2014, vol. 289, no. 18, pp. 12300–12312.PubMedPubMedCentralCrossRefGoogle Scholar
  167. 167.
    Malik, M., Zhao, X., and Drlica, K., Mol. Microbiol., 2006, vol. 61, no. 3, pp. 810–825.PubMedCrossRefGoogle Scholar
  168. 168.
    Cambridge, J., Blinkova, A., Magnan, D., Bates, D., and Walker, J.R., J. Bacteriol., 2014, vol. 196, no. 1, pp. 36–49.PubMedPubMedCentralCrossRefGoogle Scholar
  169. 169.
    Pohlhaus, J.R. and Kreuzer, K.N., Mol. Microbiol., 2005, vol. 56, no. 6, pp. 1416–1429.PubMedPubMedCentralCrossRefGoogle Scholar
  170. 170.
    Dwyer, D.J., Kohanski, M.A., Hayete, B., and Collins, J.J., Mol. Syst. Biol., 2007, vol. 3, no. 91, pp. 1–15.Google Scholar
  171. 171.
    Didier, J.P., Villet, R., Huggler, E., Lew, D.P., Hooper, D.C., Kelley, W.L., and Vaudaux, P., Antimicrob. Agents Chemother., 2011, vol. 55, no. 5, pp. 1946–1952.PubMedPubMedCentralCrossRefGoogle Scholar
  172. 172.
    Hughes, D. and Andersson, D.I., Curr. Opin. Microbiol., 2012, vol. 15, no. 5, pp. 555–560.PubMedCrossRefGoogle Scholar
  173. 173.
    Plata, K.B., Riosa, S., Singh, C.R., Rosato, R.R., and Rosato, A.E., PLoS One, 2013, vol. 8, no. 4, p. e61083.PubMedPubMedCentralCrossRefGoogle Scholar
  174. 174.
    Pogliano, J., Pogliano, K., Weiss, D.A., Losick, R., and Beckwith, J., Proc. Natl. Acad. Sci. U. S. A., 1997, vol. 94, no. 2, pp. 559–564.PubMedPubMedCentralCrossRefGoogle Scholar
  175. 175.
    Nguyen-Disteche, M.F., Fraipont, C.F., Buddelmeijer, N.F., and Nanninga, N., Cell Mol. Life. Sci., 1998, vol. 54, no. 4, pp. 309–316.PubMedCrossRefGoogle Scholar
  176. 176.
    Sauvage, E., Derouaux, A., Fraipont, C., Joris, M., Herman, R., Rocaboy, M., Schloesser, M., Dumas, J., Kerff, F., Nguyen-Disteche, M., and Charlier, P., PLoS One, 2014, vol. 9, no. 5, p. e98042. doi 10.1371/ journal.pone.0098042PubMedPubMedCentralCrossRefGoogle Scholar
  177. 177.
    Baharoglu, Z., Krin, E., and Mazel, D., PLoS Genet., 2013, vol. 9, no. 4, p. e1003421. doi 10.1371/journal. pgen.1003421PubMedPubMedCentralCrossRefGoogle Scholar
  178. 178.
    Baharoglu, Z., Bikard, D., and Mazel, D., PLoS Genet., 2010, vol. 6, no. 10, p. e1001165. doi 10.1371/ journal.pgen.1001165PubMedPubMedCentralCrossRefGoogle Scholar
  179. 179.
    Alam, M.K., Alhhazmi, A., DeCoteau, J.F., Luo, Y., and Geyer, C.R., Cell Chem. Biol., 2016, vol. 23, no. 3, pp. 381–391.PubMedCrossRefGoogle Scholar
  180. 180.
    Baharoglu, Z., Babosan, A., and Mazel, D., Nucleic Acids Res., 2014, vol. 42, no. 4, pp. 2366–2379.PubMedCrossRefGoogle Scholar
  181. 181.
    Dorr, T., Vulic, M., and Lewis, K., PLoS Biol., 2010, vol. 8, no. 2, p. e1000317. doi 10.1371/journal. pbio.1000317PubMedPubMedCentralCrossRefGoogle Scholar
  182. 182.
    Kimsey, H.H. and Waldor, M.K., J. Bacteriol., 2009, vol. 191, no. 22, pp. 6788–6795.PubMedPubMedCentralCrossRefGoogle Scholar
  183. 183.
    Gotoh, H., Kasaraneni, N., Devineni, N., Dallo, S.F., and Weitao, T., Biofouling, 2010, vol. 26, no. 5, pp. 603–611.PubMedCrossRefGoogle Scholar
  184. 184.
    Baharoglu, Z. and Mazel, D., Antimicrob. Agents Chemother., 2011, vol. 55, no. 5, pp. 2438–2441.PubMedPubMedCentralCrossRefGoogle Scholar
  185. 185.
    Merrikh, H., Ferrazzoli, A.E., Bougdour, A., Olivier-Mason, A., and Lovett, S.T., Proc. Natl. Acad. Sci. U. S. A., 2009, vol. 106, pp. 611–616.PubMedPubMedCentralCrossRefGoogle Scholar
  186. 186.
    Hocquet, D. and Bertrand, X., J. Antimicrob. Chemother., 2014, vol. 69, no. 3, pp. 852–854.PubMedCrossRefGoogle Scholar
  187. 187.
    Weber, H., Polen, T., Heuveling, J., Wendisch, V.F., and Hengge, R., J. Bacteriol., 2005, vol. 187, no. 5, pp. 1591–1603.PubMedPubMedCentralCrossRefGoogle Scholar
  188. 188.
    Schellhorn, H.E., Future Microbiol., 2014, vol. 9, no. 4, pp. 497–507.PubMedCrossRefGoogle Scholar
  189. 189.
    Hengge-Aronis, R., J. Mol. Microbiol. Biotechnol., 2002, vol. 4, no. 3, pp. 341–346.PubMedGoogle Scholar
  190. 190.
    Dong, T. and Schellhorn, H., Mol. Genet. Genomics, 2009, vol. 281, no. 1, pp. 19–33.PubMedCrossRefGoogle Scholar
  191. 191.
    Dong, T., Kirchhof, M.G., and Schellhorn, H.E., Mol. Genet. Genomics, 2008, vol. 279, no. 3, pp. 267–277.PubMedCrossRefGoogle Scholar
  192. 192.
    Landini, P., Egli, T., Wolf, J., and Lacour, S., Environ. Microbiol. Rep., 2014, vol. 6, no. 1, pp. 1–13.PubMedCrossRefGoogle Scholar
  193. 193.
    Ishihama, A., FEMS Microbiol. Rev., 2010, vol. 34, no. 5, pp. 628–645.PubMedCrossRefGoogle Scholar
  194. 194.
    Battesti, A., Majdalani, N., and Gottesman, S., Annu. Rev. Microbiol., 2011, vol. 65, pp. 189–213.PubMedCrossRefGoogle Scholar
  195. 195.
    Nikel, P.I., Chavarria, M., Martinez-Garcia, E., Taylor, A.C., and de Lorenzo, V., Microb. Cell Fact., 2013, vol. 12, no. 50, pp. 1–14.Google Scholar
  196. 196.
    Shiba, T., Tsutsumi, K., Yano, H., Ihara, Y., Kameda, A., Tanaka, K., Takahashi, H., Munekata, M., Rao, N.N., and Kornberg, A., Proc. Natl. Acad. Sci. U. S. A., 1997, vol. 94, no. 21, pp. 11210–11215.PubMedPubMedCentralCrossRefGoogle Scholar
  197. 197.
    Wurm, P., Tutz, S., Mutsam, B., Vorkapic, D., Heyne, B., Grabner, C., Kleewein, K., Halscheidt, A., Schild, S., and Reidl, J., Int. J. Med. Microbiol., 2017, vol. 307, no. 3, pp. 154–165.PubMedCrossRefGoogle Scholar
  198. 198.
    Micevski, D., Zammit, J.E., Truscott, K.N., and Dougan, D.A., Front. Mol. Biosci., 2015, vol. 2, no. 15, pp. 1–10.Google Scholar
  199. 199.
    Jishage, M., Kvint, K., Shingler, V., and Nystrom, T., Genes Dev., 2002, vol. 16, no. 10, pp. 1260–1270.PubMedPubMedCentralCrossRefGoogle Scholar
  200. 200.
    Costanzo, A., Nicoloff, H.U., Barchinger, S.E., Banta, A.B., Gourse, R.L., and Ades, S.E., Mol. Microbiol., 2008, vol. 67, no. 3, pp. 619–632.PubMedCrossRefGoogle Scholar
  201. 201.
    Bougdour, A. and Gottesman, S., Proc. Natl. Acad. Sci. U. S. A., 2007, vol. 104, no. 31, pp. 12896–12901.PubMedPubMedCentralCrossRefGoogle Scholar
  202. 202.
    Battesti, A., Majdalani, N., and Gottesman, S., Proc. Natl. Acad. Sci. U. S. A., 2015, vol. 112, no. 16, pp. 5159–5164.PubMedPubMedCentralCrossRefGoogle Scholar
  203. 203.
    Battesti, A., Tsegaye, Y.M., Packer, D.G., Majdalani, N., and Gottesman, S., J. Bacteriol., 2012, vol. 194, no. 12, pp. 2470–2478.PubMedPubMedCentralCrossRefGoogle Scholar
  204. 204.
    Merrikh, H., Ferrazzoli, A.E., and Lovett, S.T., J. Bacteriol., 2009, vol. 191, no. 24, pp. 7436–7446.PubMedPubMedCentralCrossRefGoogle Scholar
  205. 205.
    Demple, B., Johnson, A., and Fung, D., Proc. Natl. Acad. Sci. U. S. A., 1996, vol. 83, no. 20, pp. 7731–7735.CrossRefGoogle Scholar
  206. 206.
    Gutierrez, A., Laureti, L., Crussard, S., Abida, H., Rodriguez-Rojas, A., Blazquez, J., Baharoglu, Z., Mazel, D., Darfeuille, F., Vogel, J., and Matic, I., Nat. Commun, 2013, vol. 4, no. 3, pp. 1–9. doi 10.1038/ ncomms2607Google Scholar
  207. 207.
    Deng, D., Phan, M., Sharma, A., and Sharma, M., J. Exp. Microbiol. Immunol., 2013, vol. 17, no. 4, pp. 55–59.Google Scholar
  208. 208.
    Adnan, M., Morton, G., Singh, J., and Hadi, S., Mol. Cell Biochem., 2010, vol. 342, nos. 1–2, pp. 207–213.PubMedCrossRefGoogle Scholar
  209. 209.
    Hryckowian, A.J., Battesti, A., Lemke, J.J., Meyer, Z.C., and Welch, R.A., MBio, 2014, vol. 5, no. 3, p. e01043–14. doi 10.1128/mBio.01043-14PubMedPubMedCentralCrossRefGoogle Scholar
  210. 210.
    Radzikowski, J.L., Vedelaar, S., Siegel, D., Ortega, A.D., Schmidt, A., and Heinemann, M., Mol. Syst. Biol., vol. 12, no. 9, pp. 1–18. doi 10.15252/ msb.20166998Google Scholar
  211. 211.
    Allison, K.R., Brynildsen, M.P., and Collins, J.J., Curr. Opin. Microbiol., 2011, vol. 14, no. 5, pp. 593–598.PubMedPubMedCentralCrossRefGoogle Scholar
  212. 212.
    Gefen, O. and Balaban, N.Q., FEMS Microbiol. Rev., 2009, vol. 33, nos. 1574-6976, pp. 704–717. doi 10.1111/j.1574-6976.2008.00156.xPubMedCrossRefGoogle Scholar
  213. 213.
    Kim, J.-S. and Wood, T.K., Front. Microbiol., 2016, vol. 7, no. 2134. doi 10.3389/fmicb.2016.02134Google Scholar
  214. 214.
    Kaldalu, N., Hauryliuk, V., and Tenson, T., Appl. Microbiol. Biotechnol., 2016, vol. 100, no. 15, pp. 6545–6553.PubMedPubMedCentralCrossRefGoogle Scholar
  215. 215.
    Wu, N., He, L., Cui, P., Wang, W., Yuan, Y., Liu, S., Xu, T., Zhang, S., Wu, J., Zhang, W., and Zhang, Y., Front. Microbiol., 2015, vol. 6, no. 01003, pp. 1–11. doi 10.3389/fmicb.2015.01003Google Scholar
  216. 216.
    Casadesus, J. and Low, D.A., J. Biol. Chem., 2013, vol. 288, no. 20, pp. 13929–13935.PubMedPubMedCentralCrossRefGoogle Scholar
  217. 217.
    Wood, T.K., Knabel, S.J., and Kwan, B.W., Appl. Environ. Microbiol., 2013, vol. 79, no. 23, pp. 7116–7121.PubMedPubMedCentralCrossRefGoogle Scholar
  218. 218.
    Feng, J., Kessler, D.A., Ben-Jacob, E., and Levine, H., Proc. Natl. Acad. Sci. U. S. A., 2014, vol. 111, no. 1, pp. 544–549.PubMedCrossRefGoogle Scholar
  219. 219.
    Germain, E., Roghanian, M., Gerdes, K., and Maisonneuve, E., Proc. Natl. Acad. Sci. U. S. A., 2015, vol. 112, no. 16, pp. 5171–5176.PubMedPubMedCentralCrossRefGoogle Scholar
  220. 220.
    Levin-Reisman, I. and Balaban, N., in Bacterial Persistence. Quantitative Measurements of Type I and Type II Persisters using ScanLag, Michiels, J. and Fauvart, M., Eds., New York: Springer, 2016, pp. 75–81.Google Scholar
  221. 221.
    de Jong, I.G., Haccou, P., and Kuipers, O.P., BioEssays, 2011, vol. 33, no. 3, pp. 215–223.PubMedCrossRefGoogle Scholar
  222. 222.
    Page, R. and Peti, W., Nat. Chem. Biol., 2016, vol. 12, no. 4, pp. 208–214.PubMedCrossRefGoogle Scholar
  223. 223.
    Demidenok, O.I., Kaprelyants, A.S., and Goncharenko, A.V., FEMS Microbiol. Letts., 2014, vol. 352, no. 1, pp. 69–77.CrossRefGoogle Scholar
  224. 224.
    Schumacher, M.A., Balani, P., Min, J., Chinnam, N.B., Hansen, S., Vulic, M., Lewis, K., and Brennan, R.G., Nature, 2015, vol. 524, no. 7563, pp. 59–64.PubMedCrossRefGoogle Scholar
  225. 225.
    Maisonneuve, E., Shakespeare, L.J., Jorgensen, M.G., and Gerdes, K., Proc. Natl. Acad. Sci. U. S. A., 2011, vol. 108, no. 32, pp. 13206–13211.PubMedPubMedCentralCrossRefGoogle Scholar
  226. 226.
    Kuroda, A., Murphy, H., Cashel, M., and Kornberg, A., J. Biol. Chem., 1997, vol. 272, no. 34, pp. 21240–21243.PubMedCrossRefGoogle Scholar
  227. 227.
    Hansen, S., Vulic, M., Min, J., Yen, T.J., Schumacher, M.A., Brennan, R.G., and Lewis, K., PLoS One, 2012, vol. 7, no. 6, p. e39185. doi 10.1371/journal. pone.0039185PubMedPubMedCentralCrossRefGoogle Scholar
  228. 228.
    Monack, D.M., Mueller, A., and Falkow, S., Nat. Rev. Microbiol., 2004, vol. 2, no. 9, pp. 747–765.PubMedCrossRefGoogle Scholar
  229. 229.
    Kim, J., Park, C., Imlay, J.A., and Park, W., J. Biol. Chem., 2017, vol. 292, no. 1, pp. 121–133.PubMedCrossRefGoogle Scholar
  230. 230.
    Heo, A., Jang, H.J., Sung, J.S., and Park, W., PLoS One, 2014, vol. 9, no. 10, p. e110215. doi 10.1371/journal. pone.0110215PubMedPubMedCentralCrossRefGoogle Scholar
  231. 231.
    Gupta, V., Garg, R., Garg, S., Chander, J., and Attri, A.K., Ann. Burns Fire Disasters, 2013, vol. 26, no. 4, pp. 189–192.PubMedPubMedCentralGoogle Scholar
  232. 232.
    Kindrachuk, K.N., Fernandez, L., Bains, M., and Hancock, R.E., Antimicrob. Agents Chemother., 2011, vol. 55, no. 5, pp. 1874–1882.PubMedPubMedCentralCrossRefGoogle Scholar
  233. 233.
    Sharma, R., Arya, S., Patil, S.D., Sharma, A., Jain, P.K., Navani, N.K., and Pathania, R., PLoS One, 2014, vol. 9, no. 4, p. e93833. doi 10.1371/journal. pone.0093833PubMedPubMedCentralCrossRefGoogle Scholar
  234. 234.
    Bergh, B., Michiels, J.E., Wenseleers, T., Windels, E.M., Boer, P.V., Kestemont, D., De Meester, L., Verstrepen, K.J., Verstraeten, N., Fauvart, M., and Michiels, J., Nat. Microbiol., 2016, vol. 1, no. 5, pp. 1–7. doi 10.1038/nmicrobiol.2016.20Google Scholar
  235. 235.
    Fridman, O., Goldberg, A., Ronin, I., Shoresh, N., and Balaban, N.Q., Nature, 2014, vol. 513, no. 7518, pp. 418–421.PubMedCrossRefGoogle Scholar
  236. 236.
    Cohen, N.R., Lobritz, M.A., and Collins, J.J., Cell Host Microbe, 2013, vol. 13, no. 6, pp. 632–642.PubMedPubMedCentralCrossRefGoogle Scholar
  237. 237.
    Baym, M., Lieberman, T.D., Kelsic, E.D., Chait, R., Gross, R., Yelin, I., and Kishony, R., Science, 2016, vol. 353, no. 6304, pp. 1147–1151.PubMedPubMedCentralCrossRefGoogle Scholar
  238. 238.
    Lee, H.H., Molla, M.N., Cantor, C.R., and Collins, J.J., Nature, 2010, vol. 467, no. 7311, pp. 82–85.PubMedPubMedCentralCrossRefGoogle Scholar
  239. 239.
    Conlon, B.P., Nakayasu, E.S., Fleck, L.E., LaFleur, M.D., Isabella, V.M., Coleman, K., Leonard, S.N., Smith, R.D., Adkins, J.N., and Lewis, K., Nature, 2013, vol. 503, no. 7476, pp. 365–370.PubMedPubMedCentralCrossRefGoogle Scholar
  240. 240.
    Orman, M.A. and Brynildsen, M.P., Free Radic. Biol. Med., 2016, vol. 93, no. 4, pp. 145–154. doi 10.1016/ j.freeradbiomed.2016.02.003PubMedPubMedCentralCrossRefGoogle Scholar
  241. 241.
    Agostinelli, E., Marques, M.P., Calheiros, R., Gil, F.P., Tempera, G., Viceconte, N., Battaglia, V., Grancara, S., and Toninello, A., Amino Acids, 2010, vol. 38, no. 2, pp. 393–403.PubMedCrossRefGoogle Scholar
  242. 242.
    Rhee, H.J., Kim, E.J., and Lee, J.K., J. Cellular Mol. Med., 2007, vol. 11, no. 4, pp. 685–703.CrossRefGoogle Scholar
  243. 243.
    Miller-Fleming, L., Olin-Sandoval, V., Campbell, K., and Ralser, M., J. Mol. Biol., 2015, vol. 427, no. 21, pp. 3389–3406.PubMedCrossRefGoogle Scholar
  244. 244.
    Igarashi, K. and Kashiwagi, K., Biochem. J., 1999, vol. 344, no. 3, pp. 633–642.PubMedPubMedCentralCrossRefGoogle Scholar
  245. 245.
    Shah, P. and Swiatlo, E., Mol. Microbiol., 2008, vol. 68, no. 1, pp. 4–16.PubMedCrossRefGoogle Scholar
  246. 246.
    Tkachenko, A.G., Rosenblat, G.F., Chudinov, A.A., and Raev, M.B., Curr. Microbiol., 1991, vol. 22, no. 3, pp. 151–153.CrossRefGoogle Scholar
  247. 247.
    Tkachenko, A.G. and Chudinov, A.A., Curr. Microbiol., 1994, vol. 28, no. 2, pp. 81–83.CrossRefGoogle Scholar
  248. 248.
    Tkachenko, A.G. and Chudinov, A.A., Mikrobiologiya, 1990, vol. 59, no. 1, pp. 12–18.Google Scholar
  249. 249.
    Tkachenko, A.G., Mikrobiologiya, 1990, vol. 59, no. 2, pp. 197–204.Google Scholar
  250. 250.
    Tkachenko, A.G., Rozenblat, G.F., and Chudinov, A.A., Prikl. Biokhim. Mikrobiol., 1991, vol. 27, no. 4, pp. 558–564.PubMedGoogle Scholar
  251. 251.
    Geiger, L.E. and Morris, D.R., J. Bacteriol., 1980, vol. 141, no. 3, pp. 1192–1198.PubMedPubMedCentralGoogle Scholar
  252. 252.
    Agostinelli, E., Tempera, G., Viceconte, N., Saccoccio, S., Battaglia, V., Grancara, S., Toninello, A., and Stevanato, R., Amino Acids, 2010, vol. 38, no. 2, pp. 353–368.PubMedCrossRefGoogle Scholar
  253. 253.
    Igarashi, K. and Kashiwagi, K., Biochem. Biophys. Res. Commun., 2000, vol. 271, no. 3, pp. 559–564.PubMedCrossRefGoogle Scholar
  254. 254.
    Miyamoto, S., Kashiwagi, K., Ito, K., Watanabe, S., and Igarashi, K., Arch. Biochem. Biophys., vol. 300, no. 1, pp. 63–68.Google Scholar
  255. 255.
    Igarashi, K. and Kashiwagi, K., IUBMB Life, 2015, vol. 67, no. 3, pp. 160–169.PubMedCrossRefGoogle Scholar
  256. 256.
    Tkachenko, A.G., Pshenichnov, M.R., Salakhetdinova, O., and Nesterova, L.Yu., Microbiology (Moscow), 1998, vol. 67, no. 5, pp. 494–498.Google Scholar
  257. 257.
    Tkachenko, A.G., Pshenichnov, M.R., Salakhetdinova, O.Ya.Ya., and Nesterova, L.Yu., Microbiology (Moscow), 1999, vol. 68, no. 1, pp. 21–25.Google Scholar
  258. 258.
    Yoshida, M., Meksuriyen, D., Kashiwagi, K., Kawai, G., and Igarashi, K., J. Biol. Chem., 1999, vol. 274, no. 32, pp. 22723–22728.PubMedCrossRefGoogle Scholar
  259. 259.
    Amarantos, I., Zarkadis, I.K., and Kalpaxis, D.L., Nucleic Acids Res., 2002, vol. 30, no. 13, pp. 2832–2843.PubMedPubMedCentralCrossRefGoogle Scholar
  260. 260.
    Igarashi, K. and Kashiwagi, K., J. Biochem., 2006, vol. 139, no. 1, pp. 11–16.PubMedCrossRefGoogle Scholar
  261. 261.
    Tkachenko, A.G., Nesterova, L.Yu., and Pshenichnov, M.R., Microbiology (Moscow), 2001, vol. 70, no. 4, pp. 422–428.CrossRefGoogle Scholar
  262. 262.
    Tkachenko, A. and Fedotova, M.V., Biochemistry (Moscow), 2007, vol. 72, no. 1, pp. 109–116.PubMedGoogle Scholar
  263. 263.
    Tkachenko, A.G. and Nesterova, L.Yu., Biochemistry (Moscow), 2003, vol. 68, no. 8, pp. 850–856.PubMedGoogle Scholar
  264. 264.
    Tkachenko, A.G., Shumkov, M.S., and Akhova, A.V., Biochemistry (Moscow), 2006, vol. 71, no. 2, pp. 185–193.PubMedGoogle Scholar
  265. 265.
    Martin, R.G. and Rosner, J.L., Mol. Microbiol., 2002, vol. 44, no. 6, pp. 1611–1624.PubMedCrossRefGoogle Scholar
  266. 266.
    Samartzidou, H. and Delcour, A.H., J. Bacteriol., 1999, vol. 181, no. 3, pp. 791–798.PubMedPubMedCentralGoogle Scholar
  267. 267.
    Samartzidou, H., Mehrazin, M., Xu, Z.H., Benedik, M.J., and Delcour, A.H., J. Bacteriol., 2003, vol. 185, no. 1, pp. 13–19.PubMedPubMedCentralCrossRefGoogle Scholar
  268. 268.
    Akhova, A.V. and Tkachenko, A.G., Microbiology (Moscow), 2009, vol. 78, no. 5, pp. 575–579.CrossRefGoogle Scholar
  269. 269.
    Yoshida, H. and Wada, A., Wiley Interdiscip Rev. RNA, 2014, vol. 5, no. 5, pp. 723–732.PubMedCrossRefGoogle Scholar

Copyright information

© Pleiades Publishing, Inc. 2018

Authors and Affiliations

  1. 1.Perm State Research UniversityPermRussia

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