Skip to main content
Log in

Phenotypic variability, path analysis and molecular diversity analysis in chickpea (Cicer arietinum L.)

  • Research Articles
  • Published:
Vegetos Aims and scope Submit manuscript

Abstract

The existence and degree of genetic variability and its documentation in a gene-pool is obligatory in plant breeding. Along with variability, the comprehension of genetic parameters is indispensible for understanding and its administration during crop improvement. With this opinion, 12 phenotypic traits, one biochemical parameter and 23 microsatellite markers were used to examine the genetic variability in 58 chickpea genotypes. With immense heritability (> 60.20%), the genotypes exhibited lavish variability for most of the traits. Secondary branches per plant, pods per plant, seeds per pod, seeds per plant, hundred seed weight, seed yield per plant and harvest index demonstrated a high PCV than GCV. Seed yield per plant illustrated a significant genotypic level association with pods per plant (0.728**), seeds per plant (0.648**), 100 seed weight (0.338**) and harvest index (0.683**). Pods per plant (0.198), seeds per plant (0.672), harvest index (0.170) and 100 seed weight (0.665) showed significant direct effect on seed yield per plant during path analysis. Manhattan distance produced seven clusters, at cut-off value of 0.15, during phenotypic based clustering. Microsatellite markers amplified 296 loci. The polymorphic information content confined between 0.32 (TR3) − 0.93 (CAM0443) with an average of 0.83. The DNA marker based clustering generated three discrete clusters. Faint correlation (0.097) was found between the Manhattan’s and Nei’s distance. The outcomes of the current experiment advocated that both phenotypic as well as DNA markers should be practiced jointly to arrest the true genetic diversity and to reap heterosis during hybridization.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3

Similar content being viewed by others

References

  • Ali Q, Tahir MHN, Sadaqat HA, Arshad S, Farooq J, Ahsan M, Waseem M, Iqbal A (2011) Genetic variability and correlation analysis for quantitative traits in chickpea genotypes (Cicer arietinum L.). J Bact Res 3:6–9

    Google Scholar 

  • Anbessa Y, Warkentin T, Vandenberg A, Bandara M (2006) Heritability and predicted gain from selection in components of crop duration in divergent chickpea cross populations. Euphytica 152:1–8

    Article  Google Scholar 

  • Archak S, Tyagia RK, Harerb PN, Mahaseb LB, Singh N, Dahiyaa OP, Nizarc MA, Singh M, Tilekar V, Kumar V, Dutta M, Singh NP, Bansala KC (2016) Characterization of chickpea germplasm conserved in the Indian National Gene bank and development of a core set using qualitative and quantitative trait data. Crop J 4:417–424

    Article  Google Scholar 

  • Babbar A, Prakash V, Tiwari P, Iquebal MA (2012) Genetic variability in chickpea (Cicer arietinum L.) under late sown season. Leg Res 35(1):1–7

    Google Scholar 

  • Babbar A, Pandey S, Singh R (2015) Genetic studies on chickpea genotypes grown in late sown under rice fallow conditions of Madhya Pradesh. Electron J Pl Breed 6(3):738–748

    Google Scholar 

  • Boghara MC, Dhaduk HL, Kumar S, Parekh MJ, Patel NJ, Sharma R (2016) Genetic divergence, path analysis and molecular diversity analysis in cluster bean (Cyamopsis tetragonoloba L. Taub.). Int Crop Prod 89:468–477

    Article  CAS  Google Scholar 

  • Burton GW (1952) Quantitative inheritance in grasses. In: Proceedings of the 6th international grassland congress, vol 1, pp 277–283

  • Choudhary S, Kaur J, Chhuneja P, Sandhu JS, Singh I, Singh S, Sirari A (2013) Assessment of genetic diversity in kabuli chickpea (Cicer arietinum L.) genotypes in relation to seed size using SSR markers. J Food Leg 26(1 & 2):96–99

    Google Scholar 

  • Ciftci V, Togay N, Togay Y, Dogan Y (2004) Determining relationships among yield and some yield components using path coefficient analysis in chickpea. Asian J Pl Sci 3:632–635

    Article  Google Scholar 

  • Dewey JR, Lu KH (1959) A correlation and path coefficient analysis of component of crested wheat seed production. Agron J 51:515–518

    Article  Google Scholar 

  • Doyle JJ, Doyle JL (1990) Isolation of plant DNA from fresh tissue. Focus 12:13–15

    Google Scholar 

  • Falconer DS (1960) Introduction to quantitative genetics. Oliver and Boyd, Edinburgh

    Google Scholar 

  • Farshadfar M, Farshadfar E (2008) Genetic variability and path analysis of chickpea (Cicer arietinum L.) landraces and line. J Appl Sci 8(21):3951–3956

    Article  Google Scholar 

  • Ghaffari P, Talebi R, Keshavarzi F (2014) Genetic diversity and geographical differentiation of Iranian landrace, cultivars, and exotic chickpea lines as revealed by morphological and microsatellite markers. Physiol Mol Biol Plants 20(2):225–233

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Goldman D, Merril CR (1982) Silver staining of DNA in polyacrylamide gels: linearity and effect of fragment size. Electrophoresis 3:24–26

    Article  CAS  Google Scholar 

  • Gowda CLL, Upadhyaya HD, Dronavalli N, Singh S (2011) Identification of large-seeded high-yielding stable kabuli chickpea germplasm lines for use in crop improvement. Crop Sci 51(1):198–209

    Article  Google Scholar 

  • Hajibarat Z, Saidi A, Hajibarat Z, Talebi R (2014) Genetic diversity and population structure analysis of landrace and improved chickpea (Cicer arietinum L.) genotypes using morphological and microsatellite markers. Environ Exp Biol 12:161–166

    Google Scholar 

  • Iruela M, Rubio J, Cubero JI, Gil J, Millan T (2002) Phylogenetic analysis in the genus Cicer and cultivated chickpea using RAPD and ISSR markers. Theor Appl Genet 104(4):643–651

    Article  CAS  PubMed  Google Scholar 

  • Jafari N, Behroozi R, Bagheri A, Moshtaghi N (2012) Determination of genetic diversity of cultivated chickpea (Cicer arietinum L) using Medicago truncatula EST-SSRs. J Pl Mol Breed 1(2):1–16

    Google Scholar 

  • Jeena AS, Arora PP (2002) Path analysis in relation to selection in chickpea. Agril Sci Digest 22(2):122–127

    Google Scholar 

  • Jivani JV, Maheta DR, Vaddoria MA, Raval L (2013) Correlation and path coefficient analysis in chickpea (Cicer arietinum L.). Electron J Pl Breed 4(2):1167–1170

    Google Scholar 

  • Kalve S, Tadege M (2017) A comprehensive technique for artificial hybridization in Chickpea (Cicer arietinum). Plant Methods 13(52):1–9

    Google Scholar 

  • Kobraee S, Kayvan S, Behrooz R, Saeed K (2010) Investigation of correlation analysis and relationships between grain yield and other quantitative traits in chickpea. Afr J Biotech 9(6):2342–2348

    Google Scholar 

  • Kumar S, Ramavtar S, Vinod K, Govind V, Abhishek R (2013) Combining molecular-marker and chemical analysis of Capparis decidua (Capparaceae) in the Thar Desert of Western Rajasthan (India). Rev Biol Trop 61:311–320

    Article  PubMed  Google Scholar 

  • Liu K, Muse SV (2005) Power marker: integrated analysis environment for genetic markers data. Bioinfo 21:2128–2129

    Article  CAS  Google Scholar 

  • Macar TK, Macar O, Mart Dİ (2017) Variability in some biochemical and nutritional characteristics in desi and Turkish kabuli chickpea (Cicer arietinum L.) types. Celal Bayar Üniversitesi Fen Bilimleri Dergisi 13(3):677–680

    Article  CAS  Google Scholar 

  • Mahiboobsa M, Mannur DM, Shankergoud I, Somasekhar SG, Nidagundi JM (2017) Genetic variability studies in marker assisted backcross lines of chickpea (C. arietinum L). Int J Curr Microbiol Appl Sci 6(12):5375–5384

    Article  Google Scholar 

  • Mehmet A, Emel GB (2013) Correlations and path analysis of yield and some yield components in chickpea (Cicer arietinum L.). J Food Agric Environ 11(3 & 4):748–749

    Google Scholar 

  • Mohammad RN, Sajad RM, Gomez H (2012) Genetic diversity in Iranian chickpea (Cicer arietinum L.) landraces as revealed by microsatellite markers. Czech J Genet Pl Breed 48(3):131–138

    Article  Google Scholar 

  • Muhammad AA, Nausherwan NN, Amjad A, Zulkiffal M, Sajjad M (2009) Evaluation of selection criteria in Cicer arietinum L. using correlation coefficients and path analysis. Aust J Crop Sci 3(2):65–70

    Google Scholar 

  • Muhammad SS, Muhammad A, Zafar M, Muhammad A, Awais S, Muhammad IA (2016) Genetic variability and interrelationship of various agronomic traits using correlation and path analysis in chickpea (Cicer arietinum L.). Acad J Agril Res 4(2):82–85

    Google Scholar 

  • Naghavi MR, Jahansouz MR (2005) Variation in the agronomic and morphological traits of Iranian chickpea accessions. J Integr Plant Biol 47(3):375–379

    Article  Google Scholar 

  • Nei M (1973) Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci 70(12):3321–3323

    Article  CAS  PubMed  Google Scholar 

  • Nguyen TT, Taylor PWJ, Redden RJ, Ford R (2004) Genetic diversity estimates in Cicer using AFLP analysis. Plant Breed 123:173–179

    Article  CAS  Google Scholar 

  • Nkonge C, Ballance GM (1982) A sensitive colorimetric procedure for nitrogen determination in micro-Kjeldahl digests. J Agric Food Chem 30(3):416–420

    Article  CAS  Google Scholar 

  • Noor F, Ashraf M, Gafoor A (2003) Path analysis and relationship among quantitative traits in Chickpea. Pak J Biol Sci 6(6):551–555

    Article  Google Scholar 

  • Ozdemir S (1996) Path coefficient analysis for yield and its components in chickpea. ICPN 3:19–21

    Google Scholar 

  • Padmavathi PV, Murthy SS, Rao VS, Ahamed ML (2013) Correlation and path coefficient analysis in kabuli chickpea (Cicer arietinum L.). Int J Appl Biol Pharm 4(3):107–110

    Google Scholar 

  • Parameshwarappa SG, Palakshappa MG, Salimath PM, Parameshwarappa KG (2009) Evaluation and characterization of germplasm accessions of sesame (Sesamum indicum L.) Karnataka. J Agric Sci 22:1084–1086

    Google Scholar 

  • Parida G, Saghfi S, Eivazi A, Akbarzadeh A, Kavetskyy T, Aliyeva I, Khalilov R (2018) Study of genetic advance and broad sense heritability for grain yield and yield components of chickpea (Cicer arietinum L.) genotypes. Adv Biol Earth Sci 3(1):5–12

    Google Scholar 

  • Rathore PS, Sharma SK (2003) Scientific pulse production. Yash Publishing House, Bikaner, p 92

    Google Scholar 

  • Robinson HF, Comstock RE, Harvey PH (1949) Estimates of heritability and degree of dominance in corn. Agron J 41:353

    Article  Google Scholar 

  • Roorkiwal M, Sawargaonkar SL, Chitikineni A, Thudi M, Saxena RK, Upadhyaya HD, Vales MI, Riera-Lizarazu O, Varshney RK (2013) Single nucleotide polymorphism genotyping for breeding and genetics applications in Chickpea and Pigeon pea using the BeadXpress Platform. Plant Genome 2(6):1–10

    Google Scholar 

  • Rukhsar Patel MP, Parmar DJ, Kalola AD, Kumar S (2017) Morphological and molecular diversity patterns in castor germplasm accessions. Ind Crops Prod 97:316–323

    Article  Google Scholar 

  • Sachdeva S, Bharadwaj C, Sharma V, Patil BS, Soren KR, Roorkiwal M, Varshney R, Bhat KV (2018) Molecular and phenotypic diversity among chickpea (Cicer arietinum) genotypes as a function of drought tolerance. Crop Pasture Sci 2(69):142–153

    Article  CAS  Google Scholar 

  • Saiyad MM, Kumar S (2017) Evaluation of maize genotypes for fodder quality traits and SSR diversity. J Plant Biochem Biotechnol 15:7. https://doi.org/10.1007/s13562-017-0418-6

    Article  Google Scholar 

  • Sarvaliya VM (1993) Correlation, path analysis, selection indices and genetic divergence in chickpea. M.Sc. (Agri.) thesis submitted to Gujarat Agricultural University, Sardar Krushinagar

  • Savaliya JJ, Kavani RH, Vaghela MD, Poshiya VK, Davada BK (2009) Genetic variability studies in kabuli chickpea (Cicer arietinum L.). Leg Res 32(3):191–194

    Google Scholar 

  • Sharanappa SD, Kumar J, Meena HP, Bharadwaj C, Jagadeesh HM, Raghvendra KP, Singode A (2014) Studies on heritability and genetic advance in Chickpea (Cicer arietinum L.). J Food Legumes 27(1):71–73

    Google Scholar 

  • Sharifi P, Astereki H, Pouresmael M (2018) Evaluation of variations in chickpea (Cicer arietinum L.) yield and yield components by multivariate technique. Ann Agrar Sci 16:136–142

    Article  Google Scholar 

  • Singh T (2016) Estimation of genetic parameters and character associations for yield and quality traits in chickpea. Indian J Agric Res 50(2):112–117

    Google Scholar 

  • Singh SP, Sharma PC, Kumar R (2007) Correlation and path coefficient analysis in chickpea (Cicer arietinum L.). Int J Plant Sci 2(1):1–4

    Google Scholar 

  • Singh TP, Raiger HL, Kumari J, Singh A, Deshmukh PS (2014) Evaluation of chickpea genotypes for variability in seed protein content and yield components under restricted soil moisture condition. Indian J Plant Physiol 19(3):273–280

    Article  Google Scholar 

  • Sudupak MA (2013) SSR-based genetic diversity assessment of Turkish Chickpea varieties. Biotechnol Biotechnol Equip 27(5):4087–4090

    Article  CAS  Google Scholar 

  • Tadesse M, Asnake F, Million E, Nigusie G, Korbu L, Mohamed R, Dagnachew B, Assefa F, Chris OO (2016) Correlation and path coefficient analysis for various quantitative traits in desi chickpea genotypes under rainfed conditions in Ethiopia. J Agril Sci 8:112–118

    Google Scholar 

  • Talebi R, Fayaz F, Jelodar NA (2007) Correlation and path coefficient analysis of yield and yield components of chickpea (Cicer arietinum L.) under dry land condition in the west of Iran. Asian J Plant Sci 6(7):1151–1154

    Article  Google Scholar 

  • Talekar SC, Viswanatha KP, Lohithaswa HC (2017) Assessment of genetic variability, character association and path analysis in F2 segregating population for quantitative traits in Chickpea. Int J Curr Microbiol Appl Sci 6(12):2184–2192

    Article  Google Scholar 

  • Tesfamichae SM, Githiri SM, Nyende AB, Rao NVPRG (2015) Variation for agro-morphological traits among Kabuli chickpea (Cicer arietinum L) genotypes. J Agric Sci 7(7):75–92

    Google Scholar 

  • Thakur SK, Sirohi A (2009) Correlation and path coefficient Analysis in chickpea (Cicer arietinum L.) under different seasons. Leg Res 32(1):1–6

    Google Scholar 

  • Thakur NR, Toprope VN, Phanindra KS (2018) Estimation of genetic variability, correlation and path analysis for yield and yield contributing traits in chickpea (Cicer arietinum L). Leg Res 7(2):2298–2304

    Google Scholar 

  • Thudi M, Gaur PM, Krishnamurthy L, Mir RR, Kudapa H, Fikre A, Kimurto P, Tripathi S, Soren KR, Mulwa R, Bharadwaj C (2014) Genomics-assisted breeding for drought tolerance in chickpea. Funct Plant Biol 41(11):1178–1190

    Article  CAS  Google Scholar 

  • Udupa SM, Robertson LD, Weigand F, Baum M, Kahl G (1999) Allelic variation at (TAA)n microsatellite loci in a world collection of chickpea (Cicer arietinum L.) germplasm. Mol General Genet 261(2):354–363

    Article  CAS  Google Scholar 

  • Waseem M, Ali Q, Ali A, Samiullah TR, Ahmad S, Baloch DM, Khan MA, Ali S, Muzaffar A, Abbas MA, Bajwa KS (2014) Genetic analysis for various traits of Cicer arietinum under different spacing. Life Sci J 11(12):14–21

    Google Scholar 

  • Yadav P, Tripathi DK, Khan KK, Yadav AK (2012) Character association and path coefficient analysis in chickpea (Cicer arietinum L.) under late sown condition. Forage Res 37(4):258–262

    Google Scholar 

  • Yucel DO, Anlarsal AE (2010) Determination of selection criteria with path coefficient analysis in chickpea (Cicer arietinum L.) breeding. Bulg J Agril Sci 16(1):42–48

    Google Scholar 

Download references

Acknowledgements

Authors acknowledge Anand Agricultural University, Gujarat, India for providing facilities to conduct experiment.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Lalji N. Gediya.

Ethics declarations

Conflict of interest

The authors declare no conflict of interest.

Additional information

Publisher's Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary Table

 1: List of chickpea genotypes

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Gediya, L.N., Patel, D.A., Kumar, S. et al. Phenotypic variability, path analysis and molecular diversity analysis in chickpea (Cicer arietinum L.). Vegetos 32, 167–180 (2019). https://doi.org/10.1007/s42535-019-00020-9

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s42535-019-00020-9

Keywords

Navigation