Table 1 Linkage disequilibrium analysis showing correlation of functional SNPs with reported PCOS GWAS SNPs

From: Conceptualization of functional single nucleotide polymorphisms of polycystic ovarian syndrome genes: an in silico approach

Sl no Gene rsID MAF Correlation with reported PCOS GWAS SNPs R2 D′ p value
1 NEIL2 rs8191514 0.13 rs804279 0.4 0.97  < 0.0001
2 MAPRE1 rs242538 0.19 rs853854 0.69 1  < 0.0001
3 DENND1A rs12237685 0.36 rs9696009 0.18 0.68  < 0.0001
     rs2479106 0.61 0.87  < 0.0001
4 RAD50 rs3846732 0.4 rs13164856 0.79 0.97  < 0.0001
  1. NEIL2 nei like dna glycosylase 2, MAPRE1 microtubule associated protein rp/eb family member 1, DENND1A DENN domain containing 1A, RAD50 RAD50 double strand break repair protein
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