Characterization of the complete mitochondrial genome of Rusa unicolor hainana (Artiodactyla: Cervidae)
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Rusa unicolor, including seven subspecies, has been listed as a vulnerable species by the International Union for Conservation of Nature and Natural Resources. The mitochondrial genome has proven to be a highly successful resource for investigation of evolution and population genetics. In this study, the complete mitochondrial genome of Rusa unicolor hainana was sequenced and analyzed. The circle genome was found to be 16,436 bp in length, containing 13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes, and one noncoding control region. Additionally, maximum likelihood and Bayesian inference trees were conducted based on the 13 PCGs of species within the Cervinae subfamily. The phylogenetic tree demonstrated that R. u. dejeani is more closely related to R. u. swinhoei than to R. u. hainana. This study could provide important molecular data for species identification and the phylogenetic relationship of R. unicolor.
KeywordsMitochondrial genome Rusa unicolor hainana Cervinae Phylogeny
We are very grateful to Wenyi Wang for providing blood samples. We also thank Taryn A. for her language help. This study was funded by the Agricultural Science and Technology Innovation Program (CAAS-ASTIP-2017-ISAPS) and the Special Animal Genetic Resources Platform of NSTIC (SAGRP201601).
Compliance with ethical standards
Conflict of interest
The authors have declared that no conflict of interest exists.
- Chen CH, Huang HL, Chang MT, Chiang LC, Cheng SL, Liu BT, Wang CH, Wu MC, Huang MC (2011) Characterization of mitochondrial genome of Formosan sambar (Rusa unicolor swinhoei). Biologia 66(6):1196–1201Google Scholar
- Hassanin A, Delsuc F, Ropiquet A, Hammer C, Vuuren BJV, Matthee C, Ruiz-Garcia M, Catzeflis F, Areskoug V, Nguyen TT (2012) Pattern and timing of diversification of Cetartiodactyla (Mammalia, Laurasiatheria), as revealed by a comprehensive analysis of mitochondrial genomes. Comptes Rendus—Biologies 335(1):32–50PubMedGoogle Scholar
- Pocock RI (1943) The larger deer of British India. Part III-the sambar (Rusa). J Bombay Nat Hist Soc 44:27–37Google Scholar
- Timmins RKK, Giman B, Lynam A, Chan B, Steinmetz R, Sagar BH, Samba KN (2015) Rusa unicolor. IUCN Red list of threatened species (Version 2017–1). International Union for Conservation of Nature and Natural Resources. http://www.iucnredlist.org