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Conservation Genetics Resources

, Volume 10, Issue 2, pp 179–183 | Cite as

The complete mitochondrial genome of Naemorhedus griseus (Artiodactyla: Bovidae) and its phylogenetic implications

Technical Note
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Abstract

The Chinese goral (Naemorhedus griseus) has been categorized as vulnerable species by the World Conservation Union and listed as a Class I protected species in China for its over-hunting for meat, fur and medicines. In order to provide efficient genetic resources for the conservation and preservation of the endangered species, the complete mitochondrial genome of this species was determined and analyzed. It is 16,446 bp in length and contains 13 protein-coding genes (PCGs), 22 tRNA genes, two rRNA genes, one origin of replication on the light-strand (OL) and a control region. Most of the PCGs use ATG as the common initiation codon, while ND2, ATP6 and ND3 use ATA and ND5 uses ATC as the initiation codon. Most of them have TAA or TAG as the stop codon, except COIII, ND3 and ND4 use an incomplete stop codon T or TA and Cyt b uses an uncommon AGA. An ML tree involving 19 Caprinae species was constructed, which will contribute to phylogenetic studies of Caprinae and further conservation strategies for the Chinese goral.

Keywords

Chinese goral Mitogenome Phylogenetic study Conservation strategies 

Notes

Acknowledgements

This work was supported by the National Natural Science Foundation of China (31401984), the Fundamental Research Funds for the Central Universities (2572017CA18), Heilongjiang Postdoctoral Scientific Research Developmental Fund (LBH-Q15003), National Key Technology Research and Development Program Foundation of China (2011BAD13B08) and National Natural Science Foundation of China (No. 41406138).

References

  1. Benson G (1999) Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res 27:573–580. doi: 10.1093/nar/27.2.573 CrossRefPubMedPubMedCentralGoogle Scholar
  2. Boore JL (1999) Animal mitochondrial genomes. Nucleic Acids Res 27:1767–1780. doi: 10.1093/nar/27.8.1767 CrossRefPubMedPubMedCentralGoogle Scholar
  3. Buranapim N, Sitasuwan N (2014) Behavioral observations of goral (Naemorhedus griseus) in captivity. J Yala Rajabhat Univ 9:73–93Google Scholar
  4. Duckworth, J.W., Steinmetz, R., Chaiyarat, R., 2008. Naemorhedus griseus. In: IUCN 2012. IUCN Red List of Threatened Species. Version 2012.2[WWW Document]. http://www.iucnredlist.org (Accessed 23 Apr 2013)
  5. Gong L, Shi W, Si LZ, Wang ZM, Kong XY (2015) The complete mitochondrial genome of peacock sole Pardachirus pavoninus (Pleuronectiformes: Soleidae) and comparative analysis of the control region among 13 soles. Mol Biol 49:408–417. doi: 10.1134/S0026893315030061 CrossRefGoogle Scholar
  6. Gong L, Liu L-Q, Guo B-Y, Ye Y-Y, Lü Z-M (2017a) The complete mitochondrial genome of Oncorhynchus masou formosanus (Salmoniformes: Salmonidae) and phylogenetic studies of Salmoninae. Conserv Genet Resour 9:281–284. doi: 10.1007/s12686-016-0673-1 CrossRefGoogle Scholar
  7. Gong L, Liu L-Q, Guo B-Y, Ye Y-Y, Lü Z-M (2017b) The complete mitochondrial genome characterization of Thunnus obesus (Scombriformes: Scombridae) and phylogenetic analyses of Thunnus. Conserv Genet Resour. doi: 10.1007/s12686-017-0688-2 Google Scholar
  8. Hassanin A, Delsuc F, Ropiquet A, Hammer C, van Vuuren BJ, Matthee C et al (2012) Pattern and timing of diversification of Cetartiodactyla (Mammalia, Laurasiatheria), as revealed by a comprehensive analysis of mitochondrial genomes. CR Biol 335:32–50CrossRefGoogle Scholar
  9. Hassanin A, An J, Ropiquet A, Nguyen TT, Couloux A (2013) Combining multiple autosomal introns for studying shallow phylogeny and taxonomy of Laurasiatherian mammals: application to the tribe bovini (Cetartiodactyla, Bovidae). Mol Phylogenet Evol 66:766–775CrossRefPubMedGoogle Scholar
  10. Lee WJ, Conroy J, Howell WH, Kocher TD (1995) Structure and evolution of teleost mitochondrial control regions Journal Of Molecular. Evol Int J Org Evol 41:54–66Google Scholar
  11. Liu TX, Jin XX, Wang RX, Xu TJ (2013) Complete sequence of the mitochondrial genome of Odontamblyopus rubicundus (Perciformes: Gobiidae): genome characterization and phylogenetic analysis. J Genetics 92:423–432CrossRefGoogle Scholar
  12. Lowe TM, Eddy SR (1997) tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25:0955–0964CrossRefGoogle Scholar
  13. Patton ML, Aubrey L, Edwards M, Rieches R, Zuba J, Lance VA (2000) Successful contraception in a herd of Chinese goral (Nemorhaedus goral arnouxianus) with melengestrol acetate Journal Of Zoo And Wildlife. Medicine 31:228–230Google Scholar
  14. Rabinowitz A, Khaing ST (1998) Status of selected mammal species in North Myanmar. Oryx 32:201–208CrossRefGoogle Scholar
  15. Ragauskas A, Butkauskas D, Sruoga A, Kesminas V, Rashal I, Tzeng W-N (2014) Analysis of the genetic structure of the European eel Anguilla anguilla using the mtDNA D-loop region molecular marker Fisheries. Science 80:463–474Google Scholar
  16. Shan B, Song N, Han Z, Wang J, Gao T, Yokogawa K (2016) Complete mitochondrial genomes of three sea basses Lateolabrax (Perciformes, Lateolabracidae) species: genome description and phylogenetic considerations. Biochem Syst Ecol 67:44–52. doi: 10.1016/j.bse.2016.04.007 CrossRefGoogle Scholar
  17. Stothard P, Wishart DS (2005) Circular genome visualization and exploration using CGView. Bioinformatics 21:537–539CrossRefPubMedGoogle Scholar
  18. Sun M-h, Yue C-w, Liu T-t, Li L, Liu H-y (2017) The complete mitochondrial genome of Budorcas taxicolor bedfordi (Artiodactyla: Bovidae) and phylogenetic studies of Caprinae. Conservation Genetics Resources:1–4Google Scholar
  19. Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular evolutionary genetics analysis version 6.0 Molecular Biology And. Evol Int J Org Evol 30:2725–2729Google Scholar
  20. Treydte A, Trumpf P, Langenberger G, Yang Y, Liu F (2014) Wild Ungulate Distribution in the Naban River Watershed National Nature Reserve, Southwest China Journal of Tropical Forestry and Environment 3Google Scholar
  21. Zhang B, Pan T, Ren L, Wang H, Hu C (2015) Mitochondrial genome of the Naemorhedus griseus (Bovidae: Naemorhedus). Mitochondr DNA 26:636–637CrossRefGoogle Scholar
  22. Zhong H-M, Zhang H-H, Sha W-L, Zhang C-D, Chen Y-C (2010) Complete mitochondrial genome of the red fox (Vuples vuples) and phylogenetic analysis with other canid species Zoological ResearchGoogle Scholar

Copyright information

© Springer Science+Business Media B.V. 2017

Authors and Affiliations

  1. 1.College of Wildlife ResourceNortheast Forestry UniversityHarbinChina

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