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Conservation Genetics Resources

, Volume 10, Issue 2, pp 153–155 | Cite as

Single nucleotide polymorphism identification in growth-related genes from the transcriptome of the fish Ancherythroculter nigrocauda

  • Yanhong Sun
  • Qing Li
  • Huijie Wei
  • Guiying Wang
  • Jian Chen
  • Pei Li
Technical Note
  • 110 Downloads

Abstract

A total of 26 single nucleotide polymorphism (SNP) markers from the fish Ancherythoculter nigrocauda were developed using the Illumina-based RNA sequencing method. These loci were characterized by genotyping 40 individuals. Expected and observed heterozygosities ranged from 0.091 to 0.867 and from 0.091 to 0.800, respectively. Four of the loci significantly deviated from Hardy–Weinberg equilibrium after sequential Bonferroni correction (P < 0.0019). All of the SNPs were in linkage equilibrium. These markers will be useful for investigating the genetic diversity and population structure of A. nigrocauda.

Keywords

Ancherythoculter nigrocauda Single nucleotide polymorphisms High-throughput sequencing 

Notes

Acknowledgements

This research is supported by National Science Foundation of China (#31402296).

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Copyright information

© Springer Science+Business Media B.V. 2017

Authors and Affiliations

  • Yanhong Sun
    • 1
  • Qing Li
    • 1
  • Huijie Wei
    • 1
  • Guiying Wang
    • 1
  • Jian Chen
    • 1
  • Pei Li
    • 1
  1. 1.Institute of Fisheries, Wuhan Academy of Agricultural ScienceWuhanChina

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