Abstract
2-Deoxyribose 5-phosphate (DR5P) is a key intermediate in the biocatalyzed preparation of deoxyribonucleosides. Therefore, DR5P production by means of simpler, cleaner, and economic pathways becomes highly interesting. One strategy involves the use of bacterial whole cells containing DR5P aldolase as biocatalyst for the aldol addition between acetaldehyde and d-glyceraldehyde 3-phosphate or glycolytic intermediates that in situ generate the acceptor substrate. In this work, diverse microorganisms capable of synthesizing DR5P were selected by screening several bacteria genera. In particular, Erwinia carotovora ATCC 33260 was identified as a new biocatalyst that afforded 14.1-mM DR5P starting from a cheap raw material like glucose.
Similar content being viewed by others
References
Ghosh, R. K., Ghosh, S. M., & Chawla, S. (2011). Expert Opinion on Pharmacotherapy, 12, 31–46.
Bobeck, D. R., Schinazi, R. F., & Coats, S. J. (2010). Antiviral Therapy, 15, 935–950.
De Clercq, E. (2010). Current Opinion in Pharmacology, 10, 507–515.
Aljarah, M., Couturier, S., Mathé, C., & Périgaud, C. (2008). Bioorganic & Medicinal Chemistry, 16, 7436–7442.
Barai, V. N., Zinchenko, A. I., Eroshevskaya, L. A., Zhernosek, E. V., Balzarini, J., De Clercq, E., et al. (2003). Nucleosides, Nucleotides & Nucleic Acids, 22, 751–753.
Furman, P. A., Fyfe, J. A., St Clair, M. H., Weinhold, K., Rideout, J. L., Freeman, G. A., et al. (1986). Proceedings of the National Academy of Sciences of the United States of America, 83, 8333–8337.
Ichicawa, E., & Kato, K. (2001). Current Medicinal Chemistry, 8, 385–423.
Townsend, L. B., & Tipson, R. S. (1986). Nucleic acid chemistry. New York: Wiley.
Lewkowicz, E. S., & Iribarren, A. M. (2006). Current Organic Chemistry, 10, 1197–1215.
Nóbile, M., Terreni, M., Iribarren, A. M., & Lewkowicz, E. (2010). Biocatalyst Biotransformation, 28, 395–402.
Medici, R., Lewkowicz, E., & Iribarren, A. M. (2006). Journal of Molecular Catalysis B: Enzymatic, 39, 40–44.
MacDonald, D. L., & Fletcher, H. G., Jr. (1961). Journal of the American Chemical Society, 84, 1262–1265.
Prasad, A. K., Trikha, S., & Parmar, V. S. (1999). Bioorganic Chemistry, 27, 135–154.
Taverna-Porro, M., Bouvier, L. A., Pereira, C. A., Montserrat, J. M., & Iribarren, A. M. (2008). Tetrahedron Letters, 49, 2642–2645.
Clapés, P., Fessner, W. D., Sprenger, J. A., & Samland, A. K. (2010). Current Opinion in Chemical Biology, 14, 154–167.
Brovetto, M., Gamenara, D., Saenz Mendez, P., & Seoane, G. A. (2011). Chemical Reviews, 111, 4346–4403.
Barbas, C. F., III, Wang, Y.-F., & Wong, C.-H. (1990). Journal of the American Chemical Society, 112, 2013–2014.
Wong, C.-H., Garcia-Junceda, E., Chen, L., Blanco, O., Gijsen, H. J. M., & Steensma, D. H. (1995). Journal of the American Chemical Society, 117, 3333–3339.
Howells, J. D., & Lindstrom, E. S. (1958). Journal of Bacteriology, 75, 305–309.
Ogawa, J., Saito, K., Sakai, T., Horinouchi, N., Kawano, T., Matsumoto, S., et al. (2003). Bioscience, Biotechnology, and Biochemistry, 67, 933–936.
Horinouchi, N., Ogawa, J., Sakai, T., Kawano, T., Matsumoto, S., Sasaki, M., et al. (2003). Applied and Environmental Microbiology, 69, 3791–3797.
Horinouchi, N., Ogawa, J., Saito, K., Sakai, T., Kawano, T., Matsumoto, S., et al. (2006). Bioscience, Biotechnology, and Biochemistry, 70, 1371–1378.
Burton, K. (1956). Biochemical Journal, 62, 315–323.
Hoffee, P. (1968). Journal of Bacteriology, 95, 449–457.
Sgarrella, F., Poddie, F. P. A., Meloni, M. A., Sciola, L., Pippia, P., & Tozzi, M. G. (1997). Comparative Biochemistry and Physiology, 117B, 253–257.
Horinouchi, N., Ogawa, J., Kawano, T., Sakai, T., Saito, K., Sasaki, M., et al. (2006). Applied Microbiology and Biotechnology, 71, 615–621.
Acknowledgments
This work was supported by Universidad Nacional de Quilmes and Secretaría de Ciencia y Técnica de la Nación, Argentina. AMI and EL are research members and MP is a fellow of CONICET, Argentina.
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Valino, A.L., Palazzolo, M.A., Iribarren, A.M. et al. Selection of a New Whole Cell Biocatalyst for the Synthesis of 2-Deoxyribose 5-Phosphate. Appl Biochem Biotechnol 166, 300–308 (2012). https://doi.org/10.1007/s12010-011-9425-6
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s12010-011-9425-6