Abstract
Nuclear magnetic resonance (NMR)-based metabolomics profile comparisons of embryogenic and non-embryogenic calli of sugarcane were performed using principal component analysis (PCA) to determine a possible relationship between certain metabolites and somatic embryogenesis. Mahalanobis distance (DM) analysis showed significant metabolic profile differences between the embryogenic and non-embryogenic callus groups. Significantly different spectral buckets and their corresponding metabolites have been identified using volcano- and loading-plot analyses, where glucose, fructose, sucrose, and alanine were observed at higher concentrations and asparagine, glutamine, lysine, 2-hydroxyisobutyrate, and choline were observed at lower concentrations in embryogenic calli than in non-embryogenic calli. The results of this research indicate possible roles of different sugars, amino acids, and aliphatic compounds during sugarcane somatic embryogenesis.
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References
Arencibia A (1999) Gene transfer in sugarcane. In: Hohn T, Leisinger KM (eds) Biotechnology of food crops in developing countries. Plant Gene Research, pp 79–104
Arencibia AD, Carmona E, Cornide MT, Menendez E, Molina P (2000) Transgenic sugarcane (Saccharum species). In: Bajaj YPS (ed) Biotechnology in agriculture and forestry 46. Transgenic crops I. Springer, Heidelberg, pp 188–206
Blanc G, Lardet L, Martin A, Jacob JL, Carron MP (2002) Differential carbohydrate metabolism conducts morphogenesis in embryogenic callus of Hevea brasiliensis (Müll. Arg.). J Exp Bot 53:1453–1462
Bligh EG, Dyer WJ (1959) A rapid method of total lipid extraction and purification. Can J Biochem Physiol 37:911–917
Chanprame S, Kuo TM, Widholm JM (1998) Soluble carbohydrate of soybean [Glycine max (L.) Merr.] somatic and zygotic embryos during development. In Vitro Cell Dev Biol Plant 34:64–68
Choi YH, Tapias EC, Kim HK, Lefeber AWM, Erkelens C, Verhoeven JTJ, Brzin J, Zel J, Verpoorte R (2004) Metabolic discrimination of Catharanthus roseus leaves infected by phytoplasma using 1H-NMR spectroscopy and multivariate data analysis. Plant Physiol 135:2398–2410
Claparols I, Santos MA, Torne JM (1993) Influence of some exogenous amino acids on the production of maize embryogenic callus and on endogenous amino acid content. Plant Cell Tissue Organ Cult 34:1–11
Dave A, Batra A (1995) Role of protein metabolism constituents in somatic embryo formation in cumin. Indian J Plant Physiol 38:25–27
Fan TWM (1996) Metabolite profiling by one- and two-dimensional NMR analysis of complex mixtures. Prog Nucl Magn Reson Spectrosc 28:161–219
Goodpaster AM, Kennedy MA (2011) Quantification and statistical significance analysis of group separation in NMR-based metabonomics studies. Chemometr Intell Lab Syst 109:162–170
Ho WJ, Vasil IK (1983) Somatic embryogenesis in sugarcane (Saccharum officinarum L.) I. The morphology and physiology of callus formation and the ontogeny of somatic embryos. Protoplasma 118:169–180
Jeyaseelan M, Rao MV (2005) Biochemical studies of embryogenic and non-embryogenic callus of Cardiospermum halicacabum L. Indian J Exp Biol 43:555–560
Karp A (1991) On the current understanding of somaclonal variation. In: Miflin HF (ed) Oxford surveys of plant molecular and cell biology. Oxford University Press, New York, pp 1–58
Kim HK, Choi YH, Verpoorte R (2010) NMR-based metabolomic analysis of plants. Nat Protoc 5:536–549. doi:10.1038/nprot.2009.237
Kim SW, Ban SH, Jeong SC (2007) Genetic discrimination between Catharanthus roseus cultivars by metabolic fingerprinting using 1 h NMR spectra of aromatic compounds. Biotechnol Bioprocess Eng 12:646–652
Lima MRM, Felgueiras ML, Gracxa G (2010) NMR metabolomics of esca disease-affected Vitis vinifera cv. Alvarinho leaves. J Exp Bot 61:4033–4042
Loiseau J, Marche C, Deunff YL (1995) Effects of auxins, cytokinins, carbohydrates and amino acids on somatic embryogenesis induction from shoot apices of pea. Plant Cell Tissue Organ Cult 41:267–275
Lu C, Vasil IK, Ozias-Akins P (1982) Somatic embryogenesis in Zea mays L. Theor Appl Genet 62:109–112
Malabadi RB, Staden JV (2011) Role of antioxidants and amino acids on somatic embryogenesis of Pinus patula. In Vitro Cell Dev Biol Plant 41:181–186
Murashige T, Skoog F (1962) A revised medium for rapid growth and bioassays with tobacco tissue cultures. Physiol Plant 15:473–497
Nieves N, Segura-Nieto M, Blanco MA, Sánchez M, González A, González JL, Castillo R (2003) Biochemical characterization of embryogenic and non-embryogenic calluses of sugarcane. In Vitro Cell Dev Biol Plant 39:343–345
Palama TL, Menard P, Fock I, Choi YH, Bourdon E, Goviden-Soulange J, Bahut M, Payet B, Verpoorte R, Kodja H (2010) Shoot differentiation from protocorm callus cultures of Vanilla planifolia (Orchidaceae): proteomic and metabolic responses at early stage. BMC Plant Biol 10:82
Pareek LK (2005) Trends in plant tissue culture and biotechnology. Published by Agrobios, Jodhpur. ISBN 10: 8177540890 / ISBN 13: 9788177540895
Parella T (2004) Pulse Program Catalogue. In: NMRGuide4.0. Bruker BioSpin GmbH
Patel S, Jasrai YT, Adiyecha R (2011) Induction of somatic embryogenesis and genetic fidelity of endangered medicinal herb Curculigo orchioides Gaertn. Res Plant Biol 1:48–52
Philips GC, Gamborg OL (2005) Plant cell, tissue and organ culture. Narosa, New Delhi, pp 91–93
Quiroz FFR, Rojas-Herrera R, Galaz-Avalos RM, Loyola-Vargas VM (2006) Embryo production through somatic embryogenesis can be used to study cell differentiation in plants. Plant Cell Tissue Organ Cult 86:285–301
Samantaray S, Rout GR, Das P (1997) Regeneration of plants via somatic embryogenesis from leafbase and leaf tip segments of Echinochloa colona. Plant Cell Tissue Organ Cult 47:119–125
Steward F, Mapes M, Smith J (1958) Growth and organized development of cultured cells. I. Growth and division of freely suspended cells. Am J Bot 45:693–703
Tasseva G, Richard L, Zachowski A (2004) Regulation of phosphatidylcholine biosynthesis under salt stress involves choline kinases in Arabidopsis thaliana. FEBS Lett 566:115–120
Vasil IK (1987) Developing cell and tissue culture systems for the improvement of cereals and grass crops. J Plant Physiol 128:192–218
Williams EG, Maheswaran G (1986) Somatic embryogenesis: factors influencing coordinated behaviour of cells as an embryogenic group. Ann Bot 57:443–462
Wu H, Southam AD, Hines A, Viant MR (2008) High-throughput tissue extraction protocol for NMR- and MS-based metabolomics. Anal Biochem 372:204–212. doi:10.1016/j.ab.2007.10.002
Xi Y, de Ropp JS, Viant MR, Woodruff DL, Yu P (2008) Improved identification of metabolites in complex mixtures using HSQC NMR spectroscopy. Anal Chim Acta 614:127–133
Xia J, Mandal R, Sinelnikov IV, Broadhurst D, Wishart DS (2012) Metaboanalyst 2.0—a comprehensive server for metabolomic data analysis. Nucleic Acids Res 40:W127–W133. doi:10.1093/nar/gks374
Yang SO, Kim SH, Kim Y, Kim HS, Chun YJ, Choi HK (2009) Metabolic discrimination of Catharanthus roseus calli according to their relative locations using (1)H-NMR and principal component analysis. Biosci Biotechnol Biochem 73:2032–2036
Acknowledgments
We would like to thank Dr. Jack C. Comstock of USDA-ARS Sugarcane Field Station Canal Point, Florida for supplying the sugarcane materials used for initiating callus cultures that were used in this investigation as plant tissue materials for comparison. AB is supported by SC-INBRE (2 P20 GM103499), BS was supported by BlueCross BlueShield of South Carolina, and IM was supported by Biotechnology graduate program of Claflin University, South Carolina.
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Mahmud, I., Shrestha, B., Boroujerdi, A. et al. NMR-based metabolomics profile comparisons to distinguish between embryogenic and non-embryogenic callus tissue of sugarcane at the biochemical level. In Vitro Cell.Dev.Biol.-Plant 51, 340–349 (2015). https://doi.org/10.1007/s11627-015-9687-8
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DOI: https://doi.org/10.1007/s11627-015-9687-8