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An epigenetic perspective on the failing heart and pluripotent-derived-cardiomyocytes for cell replacement therapy

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Frontiers in Biology

Abstract

As life expectancy rises, the prevalence of heart failure is steadily increasing, while donors for organ transplantation remain in short supply (Zwi-Dantsis and Gepstein, 2012). Indeed, myocardial infarction represents the foremost cause of death within industrialized nations (Henning, 2011) and further, approximately 1% of all newborns harbor a congenital heart defect. Although medical interventions allow > 80% of those with cardiac defects to survive to adulthood, there are often extreme emotional and financial burdens that accompany such congenital anomalies, and many individuals will remain at a heightened risk for myocardial infarction throughout the remainder of their lives (Verheugt et al., 2010; Amianto et al., 2011). In this review, we will discuss the nature of the failing heart and strategies for repair from an epigenetic standpoint. Significant focus will reside on pluripotent-to-cardiomyocyte differentiation for cell replacement, epigenetic mechanisms of cardiomyocyte differentiation, epigenetic “memories,” and epigenetic control of cardiomyocyte cell fate toward translational utility.

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References

  • Ahmed W, Ali I S, Riaz M, Younas A, Sadeque A, Niazi A K, Niazi S H, Ali S H B, Azam M, Qamar R (2013). Association of ANRIL polymorphism (rs1333049:C>G) with myocardial infarction and its pharmacogenomic role in hypercholesterolemia. Gene, 515(2): 416–420

    PubMed  CAS  Google Scholar 

  • Amianto F, Bergui G, Abbate-Daga G, Bellicanta A, Munno D, Fassino S (2011). Growing up with a congenital heart disease: neurocognitive, psychopathological and quality of life outcomes. Panminerva Med, 53(2): 109–127

    PubMed  CAS  Google Scholar 

  • Anderson D, Self T, Mellor I R, Goh G, Hill S J, Denning C (2007). Transgenic enrichment of cardiomyocytes from human embryonic stem cells. Mol Ther, 15(11): 2027–2036

    PubMed  CAS  Google Scholar 

  • Antos C L, McKinsey T A, Dreitz M, Hollingsworth L M, Zhang C L, Schreiber K, Rindt H, Gorczynski R J, Olson E N (2003). Dosedependent blockade to cardiomyocyte hypertrophy by histone deacetylase inhibitors. J Biol Chem, 278(31): 28930–28937

    PubMed  CAS  Google Scholar 

  • Arya G, Maitra A, Grigoryev S A (2010). A structural perspective on the where, how, why, and what of nucleosome positioning. J Biomol Struct Dyn, 27(6): 803–820

    PubMed  CAS  Google Scholar 

  • Awad S, Kunhi M, Little G H, Bai Y, An W, Bers D, Kedes L, Poizat C (2013). Nuclear CaMKII enhances histone H3 phosphorylation and remodels chromatin during cardiac hypertrophy. Nucleic Acids Res, 41(16): 7656–7672

    PubMed Central  PubMed  CAS  Google Scholar 

  • Backs J, Song K, Bezprozvannaya S, Chang S, Olson E N (2006). CaM kinase II selectively signals to histone deacetylase 4 during cardiomyocyte hypertrophy. J Clin Invest, 116(7): 1853–1864

    PubMed Central  PubMed  CAS  Google Scholar 

  • Bannister A J, Kouzarides T (2011). Regulation of chromatin by histone modifications. Cell Res, 21(3): 381–395

    PubMed Central  PubMed  CAS  Google Scholar 

  • Bar-Nur O, Russ H A, Efrat S, Benvenisty N (2011). Epigenetic memory and preferential lineage-specific differentiation in induced pluripotent stem cells derived from human pancreatic islet beta cells. Cell Stem Cell, 9(1): 17–23

    PubMed  CAS  Google Scholar 

  • Bergmann O, Bhardwaj R D, Bernard S, Zdunek S, Barnabé-Heider F, Walsh S, Zupicich J, Alkass K, Buchholz B A, Druid H, Jovinge S, Frisén J (2009). Evidence for cardiomyocyte renewal in humans. Science, 324(5923): 98–102

    PubMed Central  PubMed  CAS  Google Scholar 

  • Bossuyt J, Helmstadter K, Wu X, Clements-Jewery H, Haworth R S, Avkiran M, Martin J L, Pogwizd S M, Bers D M (2008). Ca2+/calmodulin-dependent protein kinase IIdelta and protein kinase D overexpression reinforce the histone deacetylase 5 redistribution in heart failure. Circ Res, 102(6): 695–702

    PubMed  CAS  Google Scholar 

  • Brito-Martins M, Harding S E, Ali N N (2008). beta(1)- and beta(2)-adrenoceptor responses in cardiomyocytes derived from human embryonic stem cells: comparison with failing and non-failing adult human heart. Br J Pharmacol, 153(4): 751–759

    PubMed Central  PubMed  CAS  Google Scholar 

  • Brons I G, Smithers L E, Trotter M W, Rugg-Gunn P, Sun B, Chuva de Sousa Lopes S M, Howlett S K, Clarkson A, Ahrlund-Richter L, Pedersen R A, Vallier L (2007). Derivation of pluripotent epiblast stem cells from mammalian embryos. Nature, 448(7150): 191–195

    PubMed  CAS  Google Scholar 

  • Cai X, Hagedorn C H, Cullen B R (2004). Human microRNAs are processed from capped, polyadenylated transcripts that can also function as mRNAs. RNA, 10(12): 1957–1966

    PubMed Central  PubMed  CAS  Google Scholar 

  • Cai Y, Geutjes E J, de Lint K, Roepman P, Bruurs L, Yu L R, Wang W, van Blijswijk J, Mohammad H, de Rink I, Bernards R, Baylin S B (2014). The NuRD complex cooperates with DNMTs to maintain silencing of key colorectal tumor suppressor genes. Oncogene, 33(17): 2157–2168

    PubMed Central  PubMed  CAS  Google Scholar 

  • Carpenter L, Carr C, Yang C T, Stuckey D J, Clarke K, Watt SM (2012). Efficient differentiation of human induced pluripotent stem cells generates cardiac cells that provide protection following myocardial infarction in the rat. Stem Cells Dev, 21(6): 977–986

    PubMed Central  PubMed  CAS  Google Scholar 

  • Caspi O, Huber I, Kehat I, Habib M, Arbel G, Gepstein A, Yankelson L, Aronson D, Beyar R, Gepstein L (2007a). Transplantation of human embryonic stem cell-derived cardiomyocytes improves myocardial performance in infarcted rat hearts. J Am Coll Cardiol, 50(19): 1884–1893

    PubMed  Google Scholar 

  • Caspi O, Lesman A, Basevitch Y, Gepstein A, Arbel G, Habib I H, Gepstein L, Levenberg S (2007b). Tissue engineering of vascularized cardiac muscle from human embryonic stem cells. Circ Res, 100(2): 263–272

    PubMed  CAS  Google Scholar 

  • Chang S, McKinsey T A, Zhang C L, Richardson J A, Hill J A, Olson E N (2004). Histone deacetylases 5 and 9 govern responsiveness of the heart to a subset of stress signals and play redundant roles in heart development. Mol Cell Biol, 24(19): 8467–8476

    PubMed Central  PubMed  CAS  Google Scholar 

  • Chen J, Huang Z P, Seok H Y, Ding J, Kataoka M, Zhang Z, Hu X, Wang G, Lin Z, Wang S, Pu W T, Liao R, Wang D Z (2013). mir-17-92 cluster is required for and sufficient to induce cardiomyocyte proliferation in postnatal and adult hearts. Circ Res, 112(12): 1557–1566

    PubMed Central  PubMed  CAS  Google Scholar 

  • Chen T, Dent S Y (2014). Chromatin modifiers and remodellers: regulators of cellular differentiation. Nat Rev Genet, 15(2): 93–106

    PubMed Central  PubMed  CAS  Google Scholar 

  • Chimenti I, Gaetani R, Barile L, Forte E, Ionta V, Angelini F, Frati G, Messina E, Giacomello A (2012). Isolation and expansion of adult cardiac stem/progenitor cells in the form of cardiospheres from human cardiac biopsies and murine hearts. Methods Mol Biol, 879: 327–338

    PubMed  CAS  Google Scholar 

  • Choi S C, Yoon J, Shim W J, Ro Y M, Lim D S (2004). 5-azacytidine induces cardiac differentiation of P19 embryonic stem cells. Exp Mol Med, 36(6): 515–523

    PubMed  CAS  Google Scholar 

  • Chong J J, Yang X, Don CW, Minami E, Liu YW, Weyers J J, Mahoney W M, Van Biber B, Cook S M, Palpant N J, Gantz J A, Fugate J A, Muskheli V, Gough G M, Vogel K W, Astley C A, Hotchkiss C E, Baldessari A, Pabon L, Reinecke H, Gill E A, Nelson V, Kiem H P, Laflamme M A, Murry C E (2014). Human embryonic-stem-cellderived cardiomyocytes regenerate non-human primate hearts. Nature, 510(7504): 273–277

    PubMed Central  PubMed  CAS  Google Scholar 

  • Chow M, Boheler K R, Li R A (2013a). Human pluripotent stem cellderived cardiomyocytes for heart regeneration, drug discovery and disease modeling: from the genetic, epigenetic, and tissue modeling perspectives. Stem Cell Res Ther, 4(4): 97

    PubMed Central  PubMed  Google Scholar 

  • Chow M Z, Geng L, Kong CW, Keung W, Fung J C, Boheler K R, Li R A (2013b). Epigenetic regulation of the electrophysiological phenotype of human embryonic stem cell-derived ventricular cardiomyocytes: insights for driven maturation and hypertrophic growth. Stem Cells Dev, 22(19): 2678–2690

    PubMed Central  PubMed  CAS  Google Scholar 

  • Cohen S M (2014). Everything old is new again: (linc)RNAs make proteins! EMBO J, 33(9): 937–938

    PubMed  CAS  Google Scholar 

  • Cohn J N, Ferrari R, Sharpe N (2000). Cardiac remodeling—concepts and clinical implications: a consensus paper from an international forum on cardiac remodeling. Behalf of an International Forum on Cardiac Remodeling. J Am Coll Cardiol, 35(3): 569–582

    CAS  Google Scholar 

  • Coppola A, Romito A, Borel C, Gehrig C, Gagnebin M, Falconnet E, Izzo A, Altucci L, Banfi S, Antonarakis S E, Minchiotti G, Cobellis G (2014). Cardiomyogenesis is controlled by the miR-99a/let-7c cluster and epigenetic modifications. Stem Cell Res, 12(2): 323–337

    PubMed  CAS  Google Scholar 

  • Dimmeler S, Zeiher A M, Schneider M D (2005). Unchain my heart: the scientific foundations of cardiac repair. J Clin Invest, 115(3): 572–583

    PubMed Central  PubMed  CAS  Google Scholar 

  • Djebali S, Davis C A, Merkel A, Dobin A, Lassmann T, Mortazavi A, Tanzer A, Lagarde J, Lin W, Schlesinger F, Xue C, Marinov G K, Khatun J, Williams B A, Zaleski C, Rozowsky J, Röder M, Kokocinski F, Abdelhamid R F, Alioto T, Antoshechkin I, Baer MT, Bar N S, Batut P, Bell K, Bell I, Chakrabortty S, Chen X, Chrast J, Curado J, Derrien T, Drenkow J, Dumais E, Dumais J, Duttagupta R, Falconnet E, Fastuca M, Fejes-Toth K, Ferreira P, Foissac S, Fullwood M J, Gao H, Gonzalez D, Gordon A, Gunawardena H, Howald C, Jha S, Johnson R, Kapranov P, King B, Kingswood C, Luo O J, Park E, Persaud K, Preall J B, Ribeca P, Risk B, Robyr D, Sammeth M, Schaffer L, See L H, Shahab A, Skancke J, Suzuki AM, Takahashi H, Tilgner H, Trout D, Walters N, Wang H, Wrobel J, Yu Y, Ruan X, Hayashizaki Y, Harrow J, Gerstein M, Hubbard T, Reymond A, Antonarakis S E, Hannon G, Giddings M C, Ruan Y, Wold B, Carninci P, Guigó R, Gingeras T R (2012). Landscape of transcription in human cells. Nature, 489(7414): 101–108

    PubMed Central  PubMed  CAS  Google Scholar 

  • Dong S, Cheng Y, Yang J, Li J, Liu X, Wang X, Wang D, Krall T J, Delphin E S, Zhang C (2009). MicroRNA expression signature and the role of microRNA-21 in the early phase of acute myocardial infarction. J Biol Chem, 284(43): 29514–29525

    PubMed Central  PubMed  CAS  Google Scholar 

  • Dubois N C, Craft A M, Sharma P, Elliott D A, Stanley E G, Elefanty A G, Gramolini A, Keller G (2011). SIRPA is a specific cell-surface marker for isolating cardiomyocytes derived from human pluripotent stem cells. Nat Biotechnol, 29(11): 1011–1018

    PubMed  CAS  Google Scholar 

  • ENCODE Project Consortium (2012). An integrated encyclopedia of DNA elements in the human genome. Nature, 489(7414): 57–74

    Google Scholar 

  • Fan D, Takawale A, Lee J, Kassiri Z (2012). Cardiac fibroblasts, fibrosis and extracellular matrix remodeling in heart disease. Fibrogenesis Tissue Repair, 5(1): 15

    PubMed Central  PubMed  CAS  Google Scholar 

  • Felician G, Collesi C, Lusic M, Martinelli V, Ferro M D, Zentilin L, Zacchigna S, Giacca M (2014). Epigenetic modification at Notch responsive promoters blunts efficacy of inducing notch pathway reactivation after myocardial infarction. Circ Res, 115(7): 636–649

    PubMed  CAS  Google Scholar 

  • Feng Y, Wang J, Asher S, Hoang L, Guardiani C, Ivanov I, Zheng Y G (2011). Histone H4 acetylation differentially modulates arginine methylation by an in Cis mechanism. J Biol Chem, 286(23): 20323–20334

    PubMed Central  PubMed  CAS  Google Scholar 

  • Ferrara N, Komici K, Corbi G, Pagano G, Furgi G, Rengo C, Femminella G D, Leosco D, Bonaduce D (2014). β-adrenergic receptor responsiveness in aging heart and clinical implications. Front Physiol, 4: 396

    PubMed Central  PubMed  Google Scholar 

  • Fisher C L, Fisher A G (2011). Chromatin states in pluripotent, differentiated, and reprogrammed cells. Curr Opin Genet Dev, 21(2): 140–146

    PubMed  CAS  Google Scholar 

  • Fu J D, Rushing S N, Lieu D K, Chan C W, Kong CW, Geng L, Wilson K D, Chiamvimonvat N, Boheler K R, Wu J C, Keller G, Hajjar R J, Li R A (2011). Distinct roles of microRNA-1 and-499 in ventricular specification and functional maturation of human embryonic stem cell-derived cardiomyocytes. PLoS One, 6(11): e27417

    PubMed Central  PubMed  CAS  Google Scholar 

  • Fukushige S, Kondo E, Horii A (2008). Methyl-CpG targeted transcriptional activation allows re-expression of tumor suppressor genes in human cancer cells. Biochem Biophys Res Commun, 377(2): 600–605

    PubMed  CAS  Google Scholar 

  • Gadue P, Huber T L, Paddison P J, Keller G M (2006). Wnt and TGFbeta signaling are required for the induction of an in vitro model of primitive streak formation using embryonic stem cells. Proc Natl Acad Sci U S A, 103(45): 16806–16811

    PubMed Central  PubMed  CAS  Google Scholar 

  • Gafni O, Weinberger L, Mansour A A, Manor Y S, Chomsky E, Ben-Yosef D, Kalma Y, Viukov S, Maza I, Zviran A, Rais Y, Shipony Z, Mukamel Z, Krupalnik V, Zerbib M, Geula S, Caspi I, Schneir D, Shwartz T, Gilad S, Amann-Zalcenstein D, Benjamin S, Amit I, Tanay A, Massarwa R, Novershtern N, Hanna J H (2013). Derivation of novel human ground state naive pluripotent stem cells. Nature, 504(7479): 282–286

    PubMed  CAS  Google Scholar 

  • Gepstein L, Ding C, Rahmutula D, Wilson E E, Yankelson L, Caspi O, Gepstein A, Huber I, Olgin J E (2010). In vivo assessment of the electrophysiological integration and arrhythmogenic risk of myocardial cell transplantation strategies. Stem Cells, 28(12): 2151–2161

    PubMed  Google Scholar 

  • Gopalakrishnan S, Van Emburgh B O, Robertson K D (2008). DNA methylation in development and human disease. Mutat Res, 647(1–2): 30–38

    PubMed Central  PubMed  CAS  Google Scholar 

  • Graichen R, Xu X, Braam S R, Balakrishnan T, Norfiza S, Sieh S, Soo S Y, Tham S C, Mummery C, Colman A, Zweigerdt R, Davidson B P (2008). Enhanced cardiomyogenesis of human embryonic stem cells by a small molecular inhibitor of p38 MAPK. Differentiation, 76(4): 357–370

    PubMed  CAS  Google Scholar 

  • Grote P, Herrmann B G (2013). The long non-coding RNA Fendrr links epigenetic control mechanisms to gene regulatory networks in mammalian embryogenesis. RNA Biol, 10(10): 1579–1585

    PubMed Central  PubMed  CAS  Google Scholar 

  • Grote P, Wittler L, Hendrix D, Koch F, Währisch S, Beisaw A, Macura K, Bläss G, Kellis M, Werber M, Herrmann B G (2013). The tissuespecific lncRNA Fendrr is an essential regulator of heart and body wall development in the mouse. Dev Cell, 24(2): 206–214

    PubMed Central  PubMed  CAS  Google Scholar 

  • Gu Y, Liu G H, Plongthongkum N, Benner C, Yi F, Qu J, Suzuki K, Yang J, Zhang W, Li M, Montserrat N, Crespo I, Del Sol A, Esteban C R, Zhang K, Izpisua Belmonte J C (2014). Global DNA methylation and transcriptional analyses of human ESC-derived cardiomyocytes. Protein Cell, 5(1): 59–68

    PubMed Central  PubMed  CAS  Google Scholar 

  • Guo J U, Su Y, Shin J H, Shin J, Li H, Xie B, Zhong C, Hu S, Le T, Fan G, Zhu H, Chang Q, Gao Y, Ming G L, Song H (2014). Distribution, recognition and regulation of non-CpG methylation in the adult mammalian brain. Nat Neurosci, 17(2): 215–222

    PubMed Central  PubMed  CAS  Google Scholar 

  • Gupta M K, Rao T N (2014). Hearty miR-363 controls HAND1 in cardiac cell specification. Stem Cell Res Ther, 5(4): 89

    PubMed Central  PubMed  Google Scholar 

  • Haas J, Frese K S, Park Y J, Keller A, Vogel B, Lindroth A M, Weichenhan D, Franke J, Fischer S, Bauer A, Marquart S, Sedaghat-Hamedani F, Kayvanpour E, Köhler D, Wolf N M, Hassel S, Nietsch R, Wieland T, Ehlermann P, Schultz J H, Dösch A, Mereles D, Hardt S, Backs J, Hoheisel J D, Plass C, Katus H A, Meder B (2013). Alterations in cardiac DNA methylation in human dilated cardiomyopathy. EMBO Mol Med, 5(3): 413–429

    PubMed Central  PubMed  CAS  Google Scholar 

  • Haase A, Olmer R, Schwanke K, Wunderlich S, Merkert S, Hess C, Zweigerdt R, Gruh I, Meyer J, Wagner S, Maier L S, Han DW, Glage S, Miller K, Fischer P, Schöler H R, Martin U (2009). Generation of induced pluripotent stem cells from human cord blood. Cell Stem Cell, 5(4): 434–441

    PubMed  CAS  Google Scholar 

  • Halbach M, Pfannkuche K, Pillekamp F, Ziomka A, Hannes T, Reppel M, Hescheler J, Müller-Ehmsen J (2007). Electrophysiological maturation and integration of murine fetal cardiomyocytes after transplantation. Circ Res, 101(5): 484–492

    PubMed  CAS  Google Scholar 

  • Han P, Li W, Lin C H, Yang J, Shang C, Nurnberg S T, Jin K K, Xu W, Lin C Y, Lin C J, Xiong Y, Chien H C, Zhou B, Ashley E, Bernstein D, Chen P S, Chen H S, Quertermous T, Chang C P (2014). A long noncoding RNA protects the heart from pathological hypertrophy. Nature, 514(7520): 102–106

    PubMed  CAS  Google Scholar 

  • Handy D E, Castro R, Loscalzo J (2011). Epigenetic modifications: basic mechanisms and role in cardiovascular disease. Circulation, 123(19): 2145–2156

    PubMed Central  PubMed  Google Scholar 

  • Hang C T, Yang J, Han P, Cheng H L, Shang C, Ashley E, Zhou B, Chang C P (2010). Chromatin regulation by Brg1 underlies heart muscle development and disease. Nature, 466(7302): 62–67

    PubMed Central  PubMed  CAS  Google Scholar 

  • Hanna J, Cheng AW, Saha K, Kim J, Lengner C J, Soldner F, Cassady J P, Muffat J, Carey B W, Jaenisch R (2010). Human embryonic stem cells with biological and epigenetic characteristics similar to those of mouse ESCs. Proc Natl Acad Sci U S A, 107(20): 9222–9227

    PubMed Central  PubMed  CAS  Google Scholar 

  • Hansen T B, Jensen T I, Clausen B H, Bramsen J B, Finsen B, Damgaard C K, Kjems J (2013). Natural RNA circles function as efficient microRNA sponges. Nature, 495(7441): 384–388

    PubMed  CAS  Google Scholar 

  • Hattori F, Chen H, Yamashita H, Tohyama S, Satoh Y S, Yuasa S, Li W, Yamakawa H, Tanaka T, Onitsuka T, Shimoji K, Ohno Y, Egashira T, Kaneda R, Murata M, Hidaka K, Morisaki T, Sasaki E, Suzuki T, Sano M, Makino S, Oikawa S, Fukuda K (2010). Nongenetic method for purifying stem cell-derived cardiomyocytes. Nat Methods, 7(1): 61–66

    PubMed  CAS  Google Scholar 

  • Henning R J (2011). Stem cells in cardiac repair. Future Cardiol, 7(1): 99–117

    PubMed  Google Scholar 

  • Hirt MN, Boeddinghaus J, Mitchell A, Schaaf S, Börnchen C, Müller C, Schulz H, Hubner N, Stenzig J, Stoehr A, Neuber C, Eder A, Luther P K, Hansen A, Eschenhagen T (2014). Functional improvement and maturation of rat and human engineered heart tissue by chronic electrical stimulation. J Mol Cell Cardiol, 74: 151–161

    PubMed  CAS  Google Scholar 

  • Ho L, Crabtree G R (2010). Chromatin remodelling during development. Nature, 463(7280): 474–484

    PubMed Central  PubMed  CAS  Google Scholar 

  • Hoekstra M, van der Lans C A, Halvorsen B, Gullestad L, Kuiper J, Aukrust P, van Berkel T J C, Biessen E A L (2010). The peripheral blood mononuclear cell microRNA signature of coronary artery disease. Biochem Biophys Res Commun, 394(3): 792–797

    PubMed  CAS  Google Scholar 

  • Horrillo A, Pezzolla D, Fraga M F, Aguilera Y, Salguero-Aranda C, Tejedo J R, Martin F, Bedoya F J, Soria B, Hmadcha A (2013). Zebularine regulates early stages of mESC differentiation: effect on cardiac commitment. Cell Death Dis, 4(4): e570

    PubMed Central  PubMed  CAS  Google Scholar 

  • Horton R E, Millman J R, Colton C K, Auguste D T (2009). Engineering microenvironments for embryonic stem cell differentiation to cardiomyocytes. Regen Med, 4(5): 721–732

    PubMed  Google Scholar 

  • Hough S R, Laslett A L, Grimmond S B, Kolle G, Pera M F (2009). A continuum of cell states spans pluripotency and lineage commitment in human embryonic stem cells. PLoS One, 4(11): e7708

    PubMed Central  PubMed  Google Scholar 

  • Huang V, Li L C (2012). miRNA goes nuclear. RNA Biol, 9(3): 269–273

    PubMed Central  PubMed  CAS  Google Scholar 

  • Huang Z P, Chen J, Seok H Y, Zhang Z, Kataoka M, Hu X, Wang D Z (2013). MicroRNA-22 regulates cardiac hypertrophy and remodeling in response to stress. Circ Res, 112(9): 1234–1243

    PubMed Central  PubMed  CAS  Google Scholar 

  • Ikeda S, Kong S W, Lu J, Bisping E, Zhang H, Allen P D, Golub T R, Pieske B, Pu W T (2007). Altered microRNA expression in human heart disease. Physiol Genomics, 31(3): 367–373

    PubMed  CAS  Google Scholar 

  • Ishii N, Ozaki K, Sato H, Mizuno H, Saito S, Takahashi A, Miyamoto Y, Ikegawa S, Kamatani N, Hori M, Saito S, Nakamura Y, Tanaka T (2006). Identification of a novel non-coding RNA, MIAT, that confers risk of myocardial infarction. J Hum Genet, 51(12): 1087–1099

    PubMed  CAS  Google Scholar 

  • Jaguszewski M, Osipova J, Ghadri J R, Napp L C, Widera C, Franke J, Fijalkowski M, Nowak R, Fijalkowska M, Volkmann I, Katus H A, Wollert K C, Bauersachs J, Erne P, Lüscher T F, Thum T, Templin C (2014). A signature of circulating microRNAs differentiates takotsubo cardiomyopathy from acute myocardial infarction. Eur Heart J, 35(15): 999–1006

    PubMed Central  PubMed  CAS  Google Scholar 

  • Jenuwein T, Allis C D (2001). Translating the histone code. Science, 293(5532): 1074–1080

    PubMed  CAS  Google Scholar 

  • Jinek M, Chylinski K, Fonfara I, Hauer M, Doudna J A, Charpentier E (2012). A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science, 337(6096): 816–821

    PubMed  CAS  Google Scholar 

  • Karamboulas C, Swedani A, Ward C, Al-Madhoun A S, Wilton S, Boisvenue S, Ridgeway A G, Skerjanc I S (2006). HDAC activity regulates entry of mesoderm cells into the cardiac muscle lineage. J Cell Sci, 119(Pt 20): 4305–4314

    PubMed  CAS  Google Scholar 

  • Kattman S J, Witty A D, Gagliardi M, Dubois N C, Niapour M, Hotta A, Ellis J, Keller G (2011). Stage-specific optimization of activin/nodal and BMP signaling promotes cardiac differentiation of mouse and human pluripotent stem cell lines. Cell Stem Cell, 8(2): 228–240

    PubMed  CAS  Google Scholar 

  • Kavi H H, Birchler J A (2009). Interaction of RNA polymerase II and the small RNA machinery affects heterochromatic silencing in Drosophila. Epigenetics Chromatin, 2(1): 15

    PubMed Central  PubMed  Google Scholar 

  • Kawamura T, Ono K, Morimoto T, Wada H, Hirai M, Hidaka K, Morisaki T, Heike T, Nakahata T, Kita T, Hasegawa K (2005). Acetylation of GATA-4 is involved in the differentiation of embryonic stem cells into cardiac myocytes. J Biol Chem, 280(20): 19682–19688

    PubMed  CAS  Google Scholar 

  • Kehat I, Kenyagin-Karsenti D, Snir M, Segev H, Amit M, Gepstein A, Livne E, Binah O, Itskovitz-Eldor J, Gepstein L (2001). Human embryonic stem cells can differentiate into myocytes with structural and functional properties of cardiomyocytes. J Clin Invest, 108(3): 407–414

    PubMed Central  PubMed  CAS  Google Scholar 

  • Kehat I, Molkentin J D (2010). Molecular pathways underlying cardiac remodeling during pathophysiological stimulation. Circulation, 122(25): 2727–2735

    PubMed  Google Scholar 

  • Kim D H, Saetrom P, Snøve O Jr, Rossi J J (2008). MicroRNA-directed transcriptional gene silencing in mammalian cells. Proc Natl Acad Sci U S A, 105(42): 16230–16235

    PubMed Central  PubMed  CAS  Google Scholar 

  • Kim D H, Villeneuve L M, Morris K V, Rossi J J (2006). Argonaute-1 directs siRNA-mediated transcriptional gene silencing in human cells. Nat Struct Mol Biol, 13(9): 793–797

    PubMed  CAS  Google Scholar 

  • Kim J K, Samaranayake M, Pradhan S (2009). Epigenetic mechanisms in mammals. Cell Mol Life Sci, 66(4): 596–612

    PubMed Central  PubMed  CAS  Google Scholar 

  • Kim K, Doi A, Wen B, Ng K, Zhao R, Cahan P, Kim J, Aryee M J, Ji H, Ehrlich L I R, Yabuuchi A, Takeuchi A, Cunniff K C, Hongguang H, McKinney-Freeman S, Naveiras O, Yoon T J, Irizarry R A, Jung N, Seita J, Hanna J, Murakami P, Jaenisch R, Weissleder R, Orkin S H, Weissman I L, Feinberg A P, Daley G Q (2010). Epigenetic memory in induced pluripotent stem cells. Nature, 467(7313): 285–290

    PubMed Central  PubMed  CAS  Google Scholar 

  • Klattenhoff C A, Scheuermann J C, Surface L E, Bradley R K, Fields P A, Steinhauser M L, Ding H, Butty V L, Torrey L, Haas S, Abo R, Tabebordbar M, Lee R T, Burge C B, Boyer L A (2013). Braveheart, a long noncoding RNA required for cardiovascular lineage commitment. Cell, 152(3): 570–583

    PubMed Central  PubMed  CAS  Google Scholar 

  • Kohli R M, Zhang Y (2013). TET enzymes, TDG and the dynamics of DNA demethylation. Nature, 502(7472): 472–479

    PubMed Central  PubMed  CAS  Google Scholar 

  • Koitabashi N, Kass D A (2012). Reverse remodeling in heart failure—mechanisms and therapeutic opportunities. Nat Rev Cardiol, 9(3): 147–157

    CAS  Google Scholar 

  • Kolossov E, Lu Z, Drobinskaya I, Gassanov N, Duan Y, Sauer H, Manzke O, Bloch W, Bohlen H, Hescheler J, Fleischmann B K (2005). Identification and characterization of embryonic stem cellderived pacemaker and atrial cardiomyocytes. FASEB J, 19(6): 577–579

    PubMed  CAS  Google Scholar 

  • Krenning G, Zeisberg E M, Kalluri R (2010). The origin of fibroblasts and mechanism of cardiac fibrosis. J Cell Physiol, 225(3): 631–637

    PubMed Central  PubMed  CAS  Google Scholar 

  • Kreutziger K L, Muskheli V, Johnson P, Braun K, Wight T N, Murry C E (2011). Developing vasculature and stroma in engineered human myocardium. Tissue Eng Part A, 17(9–10): 1219–1228

    PubMed Central  PubMed  CAS  Google Scholar 

  • Kumarswamy R, Bauters C, Volkmann I, Maury F, Fetisch J, Holzmann A, Lemesle G, de Groote P, Pinet F, Thum T (2014). Circulating long noncoding RNA, LIPCAR, predicts survival in patients with heart failure. Circ Res, 114(10): 1569–1575

    PubMed  CAS  Google Scholar 

  • Laflamme M A, Chen K Y, Naumova A V, Muskheli V, Fugate J A, Dupras S K, Reinecke H, Xu C, Hassanipour M, Police S, O’Sullivan C, Collins L, Chen Y, Minami E, Gill E A, Ueno S, Yuan C, Gold J, Murry C E (2007). Cardiomyocytes derived from human embryonic stem cells in pro-survival factors enhance function of infarcted rat hearts. Nat Biotechnol, 25(9): 1015–1024

    PubMed  CAS  Google Scholar 

  • Laflamme M A, Gold J, Xu C, Hassanipour M, Rosler E, Police S, Muskheli V, Murry C E (2005). Formation of human myocardium in the rat heart from human embryonic stem cells. Am J Pathol, 167(3): 663–671

    PubMed Central  PubMed  CAS  Google Scholar 

  • Laflamme M A, Murry C E (2005). Regenerating the heart. Nat Biotechnol, 23(7): 845–856

    PubMed  CAS  Google Scholar 

  • Laflamme M A, Murry C E (2011). Heart regeneration. Nature, 473(7347): 326–335

    PubMed Central  PubMed  CAS  Google Scholar 

  • Laurent L, Wong E, Li G, Huynh T, Tsirigos A, Ong C T, Low HM, Kin Sung K W, Rigoutsos I, Loring J, Wei C L (2010). Dynamic changes in the human methylome during differentiation. Genome Res, 20(3): 320–331

    PubMed Central  PubMed  CAS  Google Scholar 

  • Leri A, Kajstura J, Anversa P (2011). Role of cardiac stem cells in cardiac pathophysiology: a paradigm shift in human myocardial biology. Circ Res, 109(8): 941–961

    PubMed Central  PubMed  CAS  Google Scholar 

  • Lesman A, Habib M, Caspi O, Gepstein A, Arbel G, Levenberg S, Gepstein L (2010). Transplantation of a tissue-engineered human vascularized cardiac muscle. Tissue Eng Part A, 16(1): 115–125

    PubMed  CAS  Google Scholar 

  • Li X, Wang J, Jia Z, Cui Q, Zhang C, Wang W, Chen P, Ma K, Zhou C (2013). MiR-499 regulates cell proliferation and apoptosis during late-stage cardiac differentiation via Sox6 and cyclin D1. PLoS One, 8(9): e74504

    PubMed Central  PubMed  CAS  Google Scholar 

  • Lian X, Zhang J, Azarin S M, Zhu K, Hazeltine L B, Bao X, Hsiao C, Kamp T J, Palecek S P (2013). Directed cardiomyocyte differentiation from human pluripotent stem cells by modulating Wnt/β-catenin signaling under fully defined conditions. Nat Protoc, 8(1): 162–175

    PubMed Central  PubMed  CAS  Google Scholar 

  • Lin Z, Pu WT (2014). Strategies for cardiac regeneration and repair. Sci Transl Med, 6: 239rv231

    Google Scholar 

  • Lindsley R C, Gill J G, Kyba M, Murphy T L, Murphy K M (2006). Canonical Wnt signaling is required for development of embryonic stem cell-derived mesoderm. Development, 133(19): 3787–3796

    PubMed  CAS  Google Scholar 

  • Lu T Y, Lin B, Kim J, Sullivan M, Tobita K, Salama G, Yang L (2013). Repopulation of decellularized mouse heart with human induced pluripotent stem cell-derived cardiovascular progenitor cells. Nat Commun, 4: 2307

    PubMed  Google Scholar 

  • Luco R F, Allo M, Schor I E, Kornblihtt A R, Misteli T (2011). Epigenetics in alternative pre-mRNA splicing. Cell, 144(1): 16–26

    PubMed Central  PubMed  CAS  Google Scholar 

  • Luger K, Mäder A W, Richmond R K, Sargent D F, Richmond T J (1997). Crystal structure of the nucleosome core particle at 2.8 A resolution. Nature, 389(6648): 251–260

    PubMed  CAS  Google Scholar 

  • Majumdar G, Johnson I M, Kale S, Raghow R (2008). Epigenetic regulation of cardiac muscle-specific genes in H9c2 cells by Interleukin-18 and histone deacetylase inhibitor m-carboxycinnamic acid bis-hydroxamide. Mol Cell Biochem, 312(1–2): 47–60

    PubMed  CAS  Google Scholar 

  • Marks H, Kalkan T, Menafra R, Denissov S, Jones K, Hofemeister H, Nichols J, Kranz A, Stewart A F, Smith A, Stunnenberg H G (2012). The transcriptional and epigenomic foundations of ground state pluripotency. Cell, 149(3): 590–604

    PubMed Central  PubMed  CAS  Google Scholar 

  • Matkovich S J, Edwards J R, Grossenheider T C, de Guzman Strong C, Dorn G W 2nd (2014). Epigenetic coordination of embryonic heart transcription by dynamically regulated long noncoding RNAs. Proc Natl Acad Sci U S A, 111(33): 12264–12269

    PubMed  CAS  Google Scholar 

  • Nature Methods editorial (2012). Method of the Year 2011. Nat Methods, 9(1): 1

    Google Scholar 

  • Miyamoto S, Kawamura T, Morimoto T, Ono K, Wada H, Kawase Y, Matsumori A, Nishio R, Kita T, Hasegawa K (2006). Histone acetyltransferase activity of p300 is required for the promotion of left ventricular remodeling after myocardial infarction in adult mice in vivo. Circulation, 113(5): 679–690

    PubMed  CAS  Google Scholar 

  • Movassagh M, Choy M K, Goddard M, Bennett M R, Down T A, Foo R S (2010). Differential DNA methylation correlates with differential expression of angiogenic factors in human heart failure. PLoS One, 5 (1): e8564

    PubMed Central  PubMed  Google Scholar 

  • Movassagh M, Choy M K, Knowles D A, Cordeddu L, Haider S, Down T, Siggens L, Vujic A, Simeoni I, Penkett C, Goddard M, Lio P, Bennett MR, Foo R S Y (2011). Distinct epigenomic features in endstage failing human hearts. Circulation, 124(22): 2411–2422

    PubMed Central  PubMed  Google Scholar 

  • Mujtaba S, Zeng L, Zhou M M (2007). Structure and acetyl-lysine recognition of the bromodomain. Oncogene, 26(37): 5521–5527

    PubMed  CAS  Google Scholar 

  • Mummery C, Ward-van Oostwaard D, Doevendans P, Spijker R, van den Brink S, Hassink R, van der Heyden M, Opthof T, Pera M, de la Riviere A B, Passier R, Tertoolen L (2003). Differentiation of human embryonic stem cells to cardiomyocytes: role of coculture with visceral endoderm-like cells. Circulation, 107(21): 2733–2740

    PubMed  CAS  Google Scholar 

  • Naito A T, Shiojima I, Akazawa H, Hidaka K, Morisaki T, Kikuchi A, Komuro I (2006). Developmental stage-specific biphasic roles of Wnt/beta-catenin signaling in cardiomyogenesis and hematopoiesis. Proc Natl Acad Sci U S A, 103(52): 19812–19817

    PubMed Central  PubMed  CAS  Google Scholar 

  • Narazaki G, Uosaki H, Teranishi M, Okita K, Kim B, Matsuoka S, Yamanaka S, Yamashita J K (2008). Directed and systematic differentiation of cardiovascular cells from mouse induced pluripotent stem cells. Circulation, 118(5): 498–506

    PubMed  Google Scholar 

  • Ng S Y, Wong C K, Tsang S Y (2010). Differential gene expressions in atrial and ventricular myocytes: insights into the road of applying embryonic stem cell-derived cardiomyocytes for future therapies. Am J Physiol Cell Physiol, 299(6): C1234–C1249

    PubMed  CAS  Google Scholar 

  • Nie L, Wu H J, Hsu JM, Chang S S, Labaff AM, Li C W, Wang Y, Hsu J L, Hung M C (2012). Long non-coding RNAs: versatile master regulators of gene expression and crucial players in cancer. Am J Transl Res, 4(2): 127–150

    PubMed Central  PubMed  CAS  Google Scholar 

  • Nissim L, Perli S D, Fridkin A, Perez-Pinera P, Lu T K (2014). Multiplexed and programmable regulation of gene networks with an integrated RNA and CRISPR/Cas toolkit in human cells. Mol Cell, 54(4): 698–710

    PubMed  CAS  Google Scholar 

  • Nunes S S, Miklas J W, Liu J, Aschar-Sobbi R, Xiao Y, Zhang B, Jiang J, Massé S, Gagliardi M, Hsieh A, Thavandiran N, Laflamme M A, Nanthakumar K, Gross G J, Backx P H, Keller G, Radisic M (2013). Biowire: a platform for maturation of human pluripotent stem cellderived cardiomyocytes. Nat Methods, 10(8): 781–787

    PubMed Central  PubMed  CAS  Google Scholar 

  • Nussbaum J, Minami E, Laflamme M A, Virag J A, Ware C B, Masino A, Muskheli V, Pabon L, Reinecke H, Murry C E (2007). Transplantation of undifferentiated murine embryonic stem cells in the heart: teratoma formation and immune response. FASEB J, 21(7): 1345–1357

    PubMed  CAS  Google Scholar 

  • Osafune K, Caron L, Borowiak M, Martinez R J, Fitz-Gerald C S, Sato Y, Cowan C A, Chien K R, Melton D A (2008). Marked differences in differentiation propensity among human embryonic stem cell lines. Nat Biotechnol, 26(3): 313–315

    PubMed  CAS  Google Scholar 

  • Paige S L, Thomas S, Stoick-Cooper C L, Wang H, Maves L, Sandstrom R, Pabon L, Reinecke H, Pratt G, Keller G, Moon R T, Stamatoyannopoulos J, Murry C E (2012). A temporal chromatin signature in human embryonic stem cells identifies regulators of cardiac development. Cell, 151(1): 221–232

    PubMed Central  PubMed  CAS  Google Scholar 

  • Papait R, Condorelli G (2010). Epigenetics in heart failure. Ann N Y Acad Sci, 1188(1): 159–164

    PubMed  Google Scholar 

  • Papait R, Kunderfranco P, Stirparo G G, Latronico M V, Condorelli G (2013). Long noncoding RNA: a new player of heart failure? J Cardiovasc Transl Res, 6(6): 876–883

    PubMed Central  PubMed  Google Scholar 

  • Pascut F C, Goh H T, George V, Denning C, Notingher I (2011). Toward label-free Raman-activated cell sorting of cardiomyocytes derived from human embryonic stem cells. J Biomed Opt, 16(4): 045002

    PubMed  Google Scholar 

  • Passier R, van Laake L W, Mummery C L (2008). Stem-cell-based therapy and lessons from the heart. Nature, 453(7193): 322–329

    PubMed  CAS  Google Scholar 

  • Porrello E R, Mahmoud A I, Simpson E, Hill J A, Richardson J A, Olson E N, Sadek H A (2011). Transient regenerative potential of the neonatal mouse heart. Science, 331(6020): 1078–1080

    PubMed Central  PubMed  CAS  Google Scholar 

  • Radisic M, Christman K L (2013). Materials science and tissue engineering: repairing the heart. Mayo Clin Proc, 88(8): 884–898

    PubMed Central  PubMed  CAS  Google Scholar 

  • Rai M, Walthall J M, Hu J, Hatzopoulos A K (2012). Continuous antagonism by Dkk1 counter activates canonical Wnt signaling and promotes cardiomyocyte differentiation of embryonic stem cells. Stem Cells Dev, 21(1): 54–66

    PubMed Central  PubMed  CAS  Google Scholar 

  • Rajala K, Pekkanen-Mattila M, Aalto-Setälä K (2011). Cardiac differentiation of pluripotent stem cells. Stem Cells Int, 2011: 383709

    PubMed Central  PubMed  Google Scholar 

  • Reinecke H, Zhang M, Bartosek T, Murry C E (1999). Survival, integration, and differentiation of cardiomyocyte grafts: a study in normal and injured rat hearts. Circulation, 100(2): 193–202

    PubMed  CAS  Google Scholar 

  • Reisman D, Glaros S, Thompson E A (2009). The SWI/SNF complex and cancer. Oncogene, 28(14): 1653–1668

    PubMed  CAS  Google Scholar 

  • Reynolds N, Salmon-Divon M, Dvinge H, Hynes-Allen A, Balasooriya G, Leaford D, Behrens A, Bertone P, Hendrich B (2012). NuRDmediated deacetylation of H3K27 facilitates recruitment of Polycomb Repressive Complex 2 to direct gene repression. EMBO J, 31(3): 593–605

    PubMed Central  PubMed  CAS  Google Scholar 

  • Rizzi R, Di Pasquale E, Portararo P, Papait R, Cattaneo P, Latronico M V, Altomare C, Sala L, Zaza A, Hirsch E, Naldini L, Condorelli G, Bearzi C (2012). Post-natal cardiomyocytes can generate iPS cells with an enhanced capacity toward cardiomyogenic re-differentation. Cell Death Differ, 19(7): 1162–1174

    PubMed Central  PubMed  CAS  Google Scholar 

  • Robertson K D (2005). DNA methylation and human disease. Nat Rev Genet, 6(8): 597–610

    PubMed  CAS  Google Scholar 

  • Robey T E, Saiget M K, Reinecke H, Murry C E (2008). Systems approaches to preventing transplanted cell death in cardiac repair. J Mol Cell Cardiol, 45(4): 567–581

    PubMed Central  PubMed  CAS  Google Scholar 

  • Rubart M, Pasumarthi K B, Nakajima H, Soonpaa M H, Nakajima H O, Field L J (2003). Physiological coupling of donor and host cardiomyocytes after cellular transplantation. Circ Res, 92(11): 1217–1224

    PubMed  CAS  Google Scholar 

  • Salmanidis M, Pillman K, Goodall G, Bracken C (2014). Direct transcriptional regulation by nuclear microRNAs. Int J Biochem Cell Biol, 54: 304–311

    PubMed  CAS  Google Scholar 

  • Sanchez-Freire V, Lee A S, Hu S, Abilez O J, Liang P, Lan F, Huber B C, Ong S G, Hong W X, Huang M, Wu J C (2014). Effect of human donor cell source on differentiation and function of cardiac induced pluripotent stem cells. J Am Coll Cardiol, 64(5): 436–448

    PubMed  Google Scholar 

  • Santillan D A, Theisler CM, Ryan A S, Popovic R, Stuart T, Zhou MM, Alkan S, Zeleznik-Le N J (2006). Bromodomain and histone acetyltransferase domain specificities control mixed lineage leukemia phenotype. Cancer Res, 66(20): 10032–10039

    PubMed  CAS  Google Scholar 

  • Santos-Rosa H, Schneider R, Bannister A J, Sherriff J, Bernstein B E, Emre N C, Schreiber S L, Mellor J, Kouzarides T (2002). Active genes are tri-methylated at K4 of histone H3. Nature, 419(6905): 407–411

    PubMed  CAS  Google Scholar 

  • Sarma K, Margueron R, Ivanov A, Pirrotta V, Reinberg D (2008). Ezh2 requires PHF1 to efficiently catalyze H3 lysine 27 trimethylation in vivo. Mol Cell Biol, 28(8): 2718–2731

    PubMed Central  PubMed  CAS  Google Scholar 

  • Sartiani L, Bettiol E, Stillitano F, Mugelli A, Cerbai E, Jaconi M E (2007). Developmental changes in cardiomyocytes differentiated from human embryonic stem cells: a molecular and electrophysiological approach. Stem Cells, 25(5): 1136–1144

    PubMed  CAS  Google Scholar 

  • Segers V F, Lee R T (2008). Stem-cell therapy for cardiac disease. Nature, 451(7181): 937–942

    PubMed  CAS  Google Scholar 

  • Senyo S E, Steinhauser ML, Pizzimenti C L, Yang V K, Cai L, Wang M, Wu T D, Guerquin-Kern J L, Lechene C P, Lee R T (2013). Mammalian heart renewal by pre-existing cardiomyocytes. Nature, 493(7432): 433–436

    PubMed Central  PubMed  CAS  Google Scholar 

  • Sera T (2009). Zinc-finger-based artificial transcription factors and their applications. Adv Drug Deliv Rev, 61(7–8): 513–526

    PubMed  CAS  Google Scholar 

  • Shiba Y, Fernandes S, Zhu WZ, Filice D, Muskheli V, Kim J, Palpant N J, Gantz J, Moyes K W, Reinecke H, Van Biber B, Dardas T, Mignone J L, Izawa A, Hanna R, Viswanathan M, Gold J D, Kotlikoff M I, Sarvazyan N, Kay M W, Murry C E, Laflamme M A (2012). Human ES-cell-derived cardiomyocytes electrically couple and suppress arrhythmias in injured hearts. Nature, 489(7415): 322–325

    PubMed Central  PubMed  CAS  Google Scholar 

  • Shiba Y, Hauch K D, Laflamme M A (2009). Cardiac applications for human pluripotent stem cells. Curr Pharm Des, 15(24): 2791–2806

    PubMed Central  PubMed  CAS  Google Scholar 

  • Shilatifard A (2006). Chromatin modifications by methylation and ubiquitination: implications in the regulation of gene expression. Annu Rev Biochem, 75(1): 243–269

    PubMed  CAS  Google Scholar 

  • Snir M, Kehat I, Gepstein A, Coleman R, Itskovitz-Eldor J, Livne E, Gepstein L (2003). Assessment of the ultrastructural and proliferative properties of human embryonic stem cell-derived cardiomyocytes. Am J Physiol Heart Circ Physiol, 285(6): H2355–H2363

    PubMed  CAS  Google Scholar 

  • Sondermeijer B M, Bakker A, Halliani A, de Ronde M W, Marquart A A, Tijsen A J, Mulders T A, Kok M G M, Battjes S, Maiwald S, Sivapalaratnam S, Trip MD, Moerland P D, Meijers J C M, Creemers E E, Pinto-Sietsma S J (2011). Platelets in patients with premature coronary artery disease exhibit upregulation of miRNA340* and miRNA624*. PLoS One, 6(10): e25946

    PubMed Central  PubMed  CAS  Google Scholar 

  • Stein A B, Jones T A, Herron T J, Patel S R, Day S M, Noujaim S F, Milstein M L, Klos M, Furspan P B, Jalife J, Dressler G R (2011). Loss of H3K4 methylation destabilizes gene expression patterns and physiological functions in adult murine cardiomyocytes. J Clin Invest, 121(7): 2641–2650

    PubMed Central  PubMed  CAS  Google Scholar 

  • Stevens K R, Kreutziger K L, Dupras S K, Korte F S, Regnier M, Muskheli V, Nourse M B, Bendixen K, Reinecke H, Murry C E (2009). Physiological function and transplantation of scaffold-free and vascularized human cardiac muscle tissue. Proc Natl Acad Sci U S A, 106(39): 16568–16573

    PubMed Central  PubMed  CAS  Google Scholar 

  • Stroud H, Feng S, Morey Kinney S, Pradhan S, Jacobsen S E (2011). 5-Hydroxymethylcytosine is associated with enhancers and gene bodies in human embryonic stem cells. Genome Biol, 12(6): R54

    PubMed Central  PubMed  CAS  Google Scholar 

  • Sucharov C, Bristow M R, Port J D (2008). miRNA expression in the failing human heart: functional correlates. J Mol Cell Cardiol, 45(2): 185–192

    PubMed Central  PubMed  CAS  Google Scholar 

  • Sullivan G J, Bai Y, Fletcher J, Wilmut I (2010). Induced pluripotent stem cells: epigenetic memories and practical implications. Mol Hum Reprod, 16(12): 880–885

    PubMed  CAS  Google Scholar 

  • Takaya T, Ono K, Kawamura T, Takanabe R, Kaichi S, Morimoto T, Wada H, Kita T, Shimatsu A, Hasegawa K (2009). MicroRNA-1 and MicroRNA-133 in spontaneous myocardial differentiation of mouse embryonic stem cells. Circ J, 73(8): 1492–1497

    PubMed  CAS  Google Scholar 

  • Tanasijevic B, Dai B, Ezashi T, Livingston K, Roberts R M, Rasmussen T P (2009). Progressive accumulation of epigenetic heterogeneity during human ES cell culture. Epigenetics, 4(5): 330–338

    PubMed  Google Scholar 

  • Tohyama S, Hattori F, Sano M, Hishiki T, Nagahata Y, Matsuura T, Hashimoto H, Suzuki T, Yamashita H, Satoh Y, Egashira T, Seki T, Muraoka N, Yamakawa H, Ohgino Y, Tanaka T, Yoichi M, Yuasa S, Murata M, Suematsu M, Fukuda K (2013). Distinct metabolic flow enables large-scale purification of mouse and human pluripotent stem cell-derived cardiomyocytes. Cell Stem Cell, 12(1): 127–137

    PubMed  CAS  Google Scholar 

  • Tompkins J D, Hall C, Chen V C, Li A X, Wu X, Hsu D, Couture L A, Riggs A D (2012). Epigenetic stability, adaptability, and reversibility in human embryonic stem cells. Proc Natl Acad Sci U S A, 109(31): 12544–12549

    PubMed Central  PubMed  CAS  Google Scholar 

  • Trivedi C M, Luo Y, Yin Z, Zhang M, Zhu W, Wang T, Floss T, Goettlicher M, Noppinger P R, Wurst W, Ferrari V A, Abrams C S, Gruber P J, Epstein J A (2007). Hdac2 regulates the cardiac hypertrophic response by modulating Gsk3 beta activity. Nat Med, 13(3): 324–331

    PubMed  CAS  Google Scholar 

  • Tsai M C, Manor O, Wan Y, Mosammaparast N, Wang J K, Lan F, Shi Y, Segal E, Chang H Y (2010). Long noncoding RNA as modular scaffold of histone modification complexes. Science, 329(5992): 689–693

    PubMed Central  PubMed  CAS  Google Scholar 

  • Tulloch N L, Muskheli V, Razumova MV, Korte F S, Regnier M, Hauch K D, Pabon L, Reinecke H, Murry C E (2011). Growth of engineered human myocardium with mechanical loading and vascular coculture. Circ Res, 109(1): 47–59

    PubMed Central  PubMed  CAS  Google Scholar 

  • Ueno S, Weidinger G, Osugi T, Kohn A D, Golob J L, Pabon L, Reinecke H, Moon R T, Murry C E (2007). Biphasic role for Wnt/ beta-catenin signaling in cardiac specification in zebrafish and embryonic stem cells. Proc Natl Acad Sci U S A, 104(23): 9685–9690

    PubMed Central  PubMed  CAS  Google Scholar 

  • Uosaki H, Fukushima H, Takeuchi A, Matsuoka S, Nakatsuji N, Yamanaka S, Yamashita J K (2011). Efficient and scalable purification of cardiomyocytes from human embryonic and induced pluripotent stem cells by VCAM1 surface expression. PLoS One, 6(8): e23657

    PubMed Central  PubMed  CAS  Google Scholar 

  • Van Hoof D, Dormeyer W, Braam S R, Passier R, Monshouwer-Kloots J, Ward-van Oostwaard D, Heck A J R, Krijgsveld J, Mummery C L (2010). Identification of cell surface proteins for antibody-based selection of human embryonic stem cell-derived cardiomyocytes. J Proteome Res, 9(3): 1610–1618

    PubMed  Google Scholar 

  • van Rooij E, Sutherland L B, Liu N, Williams A H, McAnally J, Gerard R D, Richardson J A, Olson E N (2006). A signature pattern of stressresponsive microRNAs that can evoke cardiac hypertrophy and heart failure. Proc Natl Acad Sci U S A, 103(48): 18255–18260

    PubMed Central  PubMed  Google Scholar 

  • Verheugt C L, Uiterwaal C S, van der Velde E T, Meijboom F J, Pieper P G, van Dijk A P, Vliegen H W, Grobbee D E, Mulder B J M (2010). Mortality in adult congenital heart disease. Eur Heart J, 31(10): 1220–1229

    PubMed  Google Scholar 

  • Voigt P, LeRoy G, Drury W J 3rd, Zee B M, Son J, Beck D B, Young N L, Garcia B A, Reinberg D (2012). Asymmetrically modified nucleosomes. Cell, 151(1): 181–193

    PubMed Central  PubMed  CAS  Google Scholar 

  • Wamstad J A, Alexander JM, Truty RM, Shrikumar A, Li F, Eilertson K E, Ding H, Wylie J N, Pico A R, Capra J A, Erwin G, Kattman S J, Keller G M, Srivastava D, Levine S S, Pollard K S, Holloway A K, Boyer L A, Bruneau B G (2012). Dynamic and coordinated epigenetic regulation of developmental transitions in the cardiac lineage. Cell, 151(1): 206–220

    PubMed Central  PubMed  CAS  Google Scholar 

  • Wang G K, Zhu J Q, Zhang J T, Li Q, Li Y, He J, Qin Y W, Jing Q (2010). Circulating microRNA: a novel potential biomarker for early diagnosis of acute myocardial infarction in humans. Eur Heart J, 31(6): 659–666

    PubMed  Google Scholar 

  • Xu C, Police S, Rao N, Carpenter M K (2002). Characterization and enrichment of cardiomyocytes derived from human embryonic stem cells. Circ Res, 91(6): 501–508

    PubMed  CAS  Google Scholar 

  • Xu H, Yi B A, Wu H, Bock C, Gu H, Lui K O, Park J H C, Shao Y, Riley A K, Domian I J, Hu E, Willette R, Lepore J, Meissner A, Wang Z, Chien K R (2012). Highly efficient derivation of ventricular cardiomyocytes from induced pluripotent stem cells with a distinct epigenetic signature. Cell Res, 22(1): 142–154

    PubMed Central  PubMed  CAS  Google Scholar 

  • Xue T, Cho H C, Akar F G, Tsang S Y, Jones S P, Marbán E, Tomaselli G F, Li R A (2005). Functional integration of electrically active cardiac derivatives from genetically engineered human embryonic stem cells with quiescent recipient ventricular cardiomyocytes: insights into the development of cell-based pacemakers. Circulation, 111(1): 11–20

    PubMed  Google Scholar 

  • Yang L, Soonpaa M H, Adler E D, Roepke T K, Kattman S J, Kennedy M, Henckaerts E, Bonham K, Abbott G W, Linden R M, Field L J, Keller G M (2008). Human cardiovascular progenitor cells develop from a KDR+ embryonic-stem-cell-derived population. Nature, 453(7194): 524–528

    PubMed  CAS  Google Scholar 

  • Yang YW, Flynn R A, Chen Y, Qu K, Wan B, Wang K C, Lei M, Chang H Y (2014). Essential role of lncRNA binding for WDR5 maintenance of active chromatin and embryonic stem cell pluripotency. Elife, 3: e02046

    PubMed Central  PubMed  Google Scholar 

  • Yao C X, Wei Q X, Zhang Y Y, Wang WP, Xue L X, Yang F, Zhang S F, Xiong C J, Li W Y, Wei Z R, Zou Y, Zang M X (2013). miR-200b targets GATA-4 during cell growth and differentiation. RNA Biol, 10(4): 465–480

    PubMed Central  PubMed  CAS  Google Scholar 

  • Yi F F, Yang L, Li Y H, Su P X, Cai J, Yang X C (2009). Electrophysiological development of transplanted embryonic stem cell-derived cardiomyocytes in the hearts of syngeneic mice. Arch Med Res, 40(5): 339–344

    PubMed  CAS  Google Scholar 

  • Yoon B S, Yoo S J, Lee J E, You S, Lee H T, Yoon H S (2006). Enhanced differentiation of human embryonic stem cells into cardiomyocytes by combining hanging drop culture and 5-azacytidine treatment. Differentiation, 74(4): 149–159

    PubMed  CAS  Google Scholar 

  • Zaratiegui M, Irvine D V, Martienssen R A (2007). Noncoding RNAs and gene silencing. Cell, 128(4): 763–776

    PubMed  CAS  Google Scholar 

  • Zhang C L, McKinsey T A, Chang S, Antos C L, Hill J A, Olson E N (2002a). Class II histone deacetylases act as signal-responsive repressors of cardiac hypertrophy. Cell, 110(4): 479–488

    PubMed  CAS  Google Scholar 

  • Zhang J, Klos M, Wilson G F, Herman A M, Lian X, Raval K K, Barron M R, Hou L, Soerens A G, Yu J, Palecek S P, Lyons G E, Thomson J A, Herron T J, Jalife J, Kamp T J (2012a). Extracellular matrix promotes highly efficient cardiac differentiation of human pluripotent stem cells: the matrix sandwich method. Circ Res, 111(9): 1125–1136

    PubMed Central  PubMed  CAS  Google Scholar 

  • Zhang L, Chen B, Zhao Y, Dubielecka P M, Wei L, Qin G J, Chin Y E, Wang Y, Zhao T C (2012b). Inhibition of histone deacetylaseinduced myocardial repair is mediated by c-kit in infarcted hearts. J Biol Chem, 287(47): 39338–39348

    PubMed Central  PubMed  CAS  Google Scholar 

  • Zhang L, Qin X, Zhao Y, Fast L, Zhuang S, Liu P, Cheng G, Zhao T C (2012c). Inhibition of histone deacetylases preserves myocardial performance and prevents cardiac remodeling through stimulation of endogenous angiomyogenesis. J Pharmacol Exp Ther, 341(1): 285–293

    PubMed Central  PubMed  CAS  Google Scholar 

  • Zhang T, Kohlhaas M, Backs J, Mishra S, Phillips W, Dybkova N, Chang S, Ling H, Bers D M, Maier L S, Olson E N, Brown J H (2007). CaMKIIdelta isoforms differentially affect calcium handling but similarly regulate HDAC/MEF2 transcriptional responses. J Biol Chem, 282(48): 35078–35087

    PubMed  CAS  Google Scholar 

  • Zhang Y M, Hartzell C, Narlow M, Dudley S C Jr (2002). Stem cellderived cardiomyocytes demonstrate arrhythmic potential. Circulation, 106(10): 1294–1299

    PubMed  Google Scholar 

  • Zhu S, Hu X, Han S, Yu Z, Peng Y, Zhu J, Liu X, Qian L, Zhu C, Li M, Song G, Guo X (2014). Differential expression profile of long noncoding RNAs during differentiation of cardiomyocytes. Int J Med Sci, 11(5): 500–507

    PubMed Central  PubMed  Google Scholar 

  • Zwi-Dantsis L, Gepstein L (2012). Induced pluripotent stem cells for cardiac repair. Cell Mol Life Sci, 69(19): 3285–3299

    PubMed  CAS  Google Scholar 

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Correspondence to Joshua D. Tompkins.

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Tompkins, J.D., Riggs, A.D. An epigenetic perspective on the failing heart and pluripotent-derived-cardiomyocytes for cell replacement therapy. Front. Biol. 10, 11–27 (2015). https://doi.org/10.1007/s11515-014-1340-0

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  • DOI: https://doi.org/10.1007/s11515-014-1340-0

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