Table 2 DArT-seq marker filtering for quality control

From: Construction of a DArT-seq marker–based genetic linkage map and identification of QTLs for yield in tea (Camellia sinensis (L.) O. Kuntze)

Quality control Number of markers remaining
Total 17,474
Polymorphic markers (6.8% of non-polymorphic markers were removed) 16,287
Non-conflicting markers 13,917
Missing proportion < 10% 10,899
Remove duplicated markers 10,775
Initial nearest neighbour fit 7170