Table 4 The built haplotype blocks after linkage disequilibrium analysis in these SNPs

From: Genetic polymorphism association analysis of SNPs on the species conservation genes of Tan sheep and Hu sheep

Block SNPS Haplotype Tan_F Hu_F OR 95% CI p
HAP1a SNP3;SNP4;SNP8 CAC 100 (0.200) 86 (0.247) 0.7616 0.5488–1.0569 0.1033
TGC 386 (0.772) 218 (0.626) 2.0192 1.4938–2.7293 0
TGT 14 (0.028) 44 (0.126) 0.199 0.1073–0.3693 0
HAP2a SNP8;SNP9 CT 486 (0.972) 303 (0.871) 5.1556 2.7825–9.5525 0
TA 14 (0.028) 44 (0.126) 0.199 0.1073–0.3693 0
HAP3a SNP15;SNP18;SNP20 AGA 297 (0.594) 216 (0.621) 0.8941 0.6753–1.1837 0.4343
GGA 21 (0.042) 2 (0.006) 7.5846 1.7667–32.5610 0.0064b
AAA 138 (0.276) 87 (0.250) 1.1436 0.8372–1.5624 0.3991
GGT 44 (0.088) 43 (0.124) 0.6844 0.4388–1.0676 0.0946
HAP4a SNP21;SNP22 AG 472 (0.944) 320 (0.920) 1.475 0.8572–2.5380 0.1604
GG 24 (0.048) 28 (0.080) 0.5762 0.3281–1.0122 0.0551
HAP5a SNP22;SNP25;SNP28 GGG 479 (0.958) 337 (0.968) 0.7445 0.3543–1.5647 0.4362
GGA 8 (0.016) 11 (0.032) 0.4982 0.1983–1.2515 0.1382
HAP6a SNP29;SNP32;SNP34;
SNP35;SNP36;SNP39;
SNP41;SNP42;SNP45;SNP46
GACGAGCCCG 24 (0.048) 23 (0.066) 0.7125 0.3953–1.2841 0.2593
GACGAGTCCG 96 (0.192) 105 (0.302) 0.5499 0.3996–0.7568 0.0002b
AATCTACTTA 32 (0.064) 5 (0.014) 4.6906 1.8090–12.1622 0.0015b
AATCTACCTG 339 (0.678) 213 (0.612) 1.3345 1.0028–1.7760 0.0478b
  1. aHAP: Haplotype block
  2. bShows that the single domain has significant statistical significance (p < 0.05)