Table 2 The significantly results about 32 SNPs in genetic models between two kinds of sheep

From: Genetic polymorphism association analysis of SNPs on the species conservation genes of Tan sheep and Hu sheep

SNP Model Genotype Tan Hu ChiScore OR (95% CI) p FDR_BH adjustedb
SNP8 Codominant C/C 236 132 31.29   1.60E−07a  
C/T 14 40     
T/T 0 2     
Dominant C/C 236 132 30.76   2.93E−08  
C/T-T/T 14 42     
Recessive C/C-C/T 250 172 2.887   8.93E−02  
T/T 0 2     
Allele C 486 304 31.2 0.199 (0.1073–0.3693) 2.32E−08 5.58E−07
T 14 44     
SNP9 Codominant T/T 236 132 31.58   1.39E−07  
T/A 14 39     
A/A 0 3     
Dominant T/T 236 132 30.76   2.93E−08  
T/A-A/A 14 42     
Recessive T/T-T/A 250 171 4.341   3.72E−02  
A/A 0 3     
Allele T 486 303 32.53 0.194 (0.1047–0.3594) 1.17E−08 2.93E−07
A 14 45     
SNP10 Codominant G/G 183 95 17.84   1.33E−04  
G/A 60 64     
A/A 7 15     
Dominant G/G 183 95 15.73   7.33E−05  
G/A-A/A 67 79     
Recessive G/G-G/A 243 159 7.066   7.86E−03  
A/A 7 15     
Allele G 426 254 19.26 0.4694 (0.3334–0.6607) 1.14E−05 2.62E−04
A 74 94     
SNP12 Codominant C/C 134 62 15.02   5.48E−04  
C/T 96 85     
T/T 20 27     
Dominant C/C 134 62 13.32   2.62E−04  
C/T-T/T 116 112     
Recessive C/C-C/T 230 147 5.882   1.53E−02  
T/T 20 27     
Allele C 364 209 15.2 0.5618 (0.4198–0.7517) 9.65E−05 1.45E−03
T 136 139     
SNP21 Codominant A/A 226 149 5.45   6.55E−02  
A/G 24 22     
G/G 0 3     
Dominant A/A 226 149 2.282   1.31E−01  
A/G-G/G 24 25     
Recessive A/A-A/G 250 171 4.341   3.72E−02  
G/G 0 3     
Allele A 476 320 3.756 0.5762 (0.3281–1.012) 5.26E−02 3.85E−01
G 24 28     
SNP25 Codominant G/G 242 174 5.675   5.86E−02  
G/A 7 0     
A/A 1 0     
Dominant G/G 242 174 5.675   1.72E−02  
G/A-A/A 8 0     
Recessive G/G-G/A 249 174 0.6976   4.04E-01  
A/A 1 0     
Allele G 491 348 6.331 NA (NA–NA) 1.19E−02 1.23E−01
A 9 0     
SNP29 Codominant A/A 144 68 15.73   3.84E−04  
A/G 91 84     
G/G 15 22     
Dominant A/A 144 68 14.07   1.76E−04  
A/G-G/G 106 106     
Recessive A/A-A/G 235 152 5.685   1.71E−02  
G/G 15 22     
Allele A 379 220 15.66 0.5487 (0.4069–0.7399) 7.58E−05 1.36E−03
G 121 128     
SNP34 Codominant T/T 145 68 16.27   2.94E−04  
T/C 90 84     
C/C 15 22     
Dominant T/T 145 68 14.69   1.27E−04  
T/C-C/C 105 106     
Recessive T/T-T/C 235 152 5.685   1.71E−02  
C/C 15 22     
Allele T 380 220 16.2 0.5428 (0.4024–0.7322) 5.70E−05 1.14E−03
C 120 128     
SNP35 Codominant C/C 145 68 16.72   2.34E−04  
C/G 90 83     
G/G 15 23     
Dominant C/C 145 68 14.69   1.27E−04  
C/G-G/G 105 106     
Recessive C/C-C/G 235 151 6.552   1.05E−02  
G/G 15 23     
Allele C 380 219 16.9 0.5361 (0.3975–0.723) 3.95E−05 8.68E−04
G 120 129     
SNP36 Codominant T/T 145 68 16.72   2.34E−04  
T/A 90 83     
A/A 15 23     
Dominant T/T 145 68 14.69   1.27E−04  
T/A-A/A 105 106     
Recessive T/T-T/A 235 151 6.552   1.05E−02  
A/A 15 23     
Allele T 380 219 16.9 0.5361 (0.3975–0.723) 3.95E−05 8.68E−04
A 120 129     
SNP39 Codominant A/A 144 68 15.73   3.84E−04  
A/G 91 84     
G/G 15 22     
Dominant A/A 144 68 14.07   1.76E−04  
A/G-G/G 106 106     
Recessive A/A-A/G 235 152 5.685   1.71E−02  
G/G 15 22     
Allele A 379 220 15.66 0.5487 (0.4069–0.7399) 7.58E−05 1.36E−03
G 121 128     
SNP41 Codominant C/C 162 81 13.97   9.26E−04  
C/T 76 80     
T/T 12 13     
Dominant C/C 162 81 13.96   1.86E−04  
C/T-T/T 88 93     
Recessive C/C-C/T 238 161 1.319   2.51E−01  
T/T 12 13     
Allele C 400 242 12.21 0.5708 (0.4159–0.7832) 4.76E−04 5.70E−03
T 100 106     
SNP42 Codominant C/C 216 169 13.57   1.13E−03  
C/T 32 5     
T/T 1 0     
Dominant C/C 216 169 13.5   2.39E−04  
C/T-T/T 33 5     
Recessive C/C-C/T 248 174 0.7005   4.03E−01  
T/T 1 0     
Allele C 464 343 13.54 5.027 (1.946–12.99) 2.34E−04 3.27E−03
T 34 5     
SNP45 Codominant T/T 145 68 16.27   2.94E−04  
T/C 90 84     
C/C 15 22     
Dominant T/T 145 68 14.69   1.27E−04  
T/C-C/C 105 106     
Recessive T/T-T/C 235 152 5.685   1.71E−02  
C/C 15 22     
Allele T 380 220 16.2 0.5428 (0.4024–0.7322) 5.70E−05 1.14E-03
C 120 128     
SNP46 Codominant G/G 218 169 12.77   1.69E−03  
G/A 31 5     
A/A 1 0     
Dominant G/G 218 169 12.69   3.67E−04  
G/A-A/A 32 5     
Recessive G/G-G/A 249 174 0.6976   4.04E−01  
A/A 1 0     
Allele G 467 343 12.78 4.848 (1.873–12.55) 3.50E−04 4.55E-03
A 33 5     
SNP61 Codominant T/T 226 167 NA   NA  
T/C 24 7     
C/C 0 0     
Dominant T/T 226 167 4.709   3.00E−02  
T/C-C/C 24 7     
Recessive T/T-T/C 250 174 NA   NA  
C/C 0 0     
Allele T 476 341 4.53 2.456 (1.046–5.766) 3.33E−02 2.87E−01
C 24 7     
A 16 11     
SNP69 Codominant A/A 80 82 16.35   2.82E−04  
A/G 124 80     
G/G 46 12     
Dominant A/A 80 82 9.943   1.62E−03  
A/G-G/G 170 92     
Recessive A/A-A/G 204 162 11.5   6.97E−04  
G/G 46 12     
Allele A 284 244 15.48 1.784 (1.335–2.384) 8.33E−05 1.36E−03
G 216 104     
  1. aIndicate that the data is statistically significant (p < 0.05)
  2. bFDR_BH: false discovery rate_ Benjamini-Hochberg correction