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Russian Chemical Bulletin

, Volume 57, Issue 5, pp 1080–1091 | Cite as

Bioactive peptides from the skin of ranid frogs: modern approaches to the mass spectrometric de novo sequencing

  • T. Yu. Samgina
  • K. A. Artemenko
  • V. A. Gorshkov
  • A. T. Lebedev
Full Article

Abstract

A mass spectrometric approach to the de novo sequencing of peptides containing up to 50 amino acid residues was proposed. Arising problems of the mass spectrometric sequencing and their solution were considered on specific examples.

Key words

mass spectrometry electrospray ionization matrix assisted laser desorption/ionization de novo sequencing bioactive peptides of frogs. 

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References

  1. 1.
    B. T. Clarke, Biol. Rev., 1997, 72, 365.CrossRefGoogle Scholar
  2. 2.
    M. Simmaco, G. Mignogna, D. Barra, Biopolymers (Peptide Science), 1998, 47, 435.CrossRefGoogle Scholar
  3. 3.
    J. Goraya, F. C. Knoop, J. M. Conlon, Biochem. Biophys. Res. Commun., 1998, 250, 589.CrossRefGoogle Scholar
  4. 4.
    J. M. Park, J. E. Jung, B. J. Lee, Biochem. Biophys. Res. Commun., 1994, 205, 948.CrossRefGoogle Scholar
  5. 5.
    S. Suzuki, Y. Ohe, T. Okubo, T. Kakegawa, K. Tatemoto, Biochem. Biophys. Res. Commun., 1995, 212, 249.CrossRefGoogle Scholar
  6. 6.
    J. Goraya, Y. Wang, Z. Li, M. OrFlaherty, F. C. Knoop, J. E. Platz, J. M. Conlon, Eur. J. Biochem., 2000, 267, 894.CrossRefGoogle Scholar
  7. 7.
    M. A. Apponyi, T. L. Pukala, C. S. Brinkworth, V. M. Maselli, J. H. Bowie, M. J. Tyler, G. W. Booker, J. C. Wallace, J. A Carver, F. Separovic, J. Doyle, L. E. Llewellyn, Peptides, 2004, 25, 1035.CrossRefGoogle Scholar
  8. 8.
    M. Zasloff, M. Anderson, AIDS, 2001, 15, S54.CrossRefGoogle Scholar
  9. 9.
    D. M. Stone, J. H. Bowie, M. J. Tyler, J. C. Wallace, J. Chem. Soc., Chem. Commun., 1992, 17, 1224.CrossRefGoogle Scholar
  10. 10.
    S. E. VanCompernolle, R. J. Taylor, K. Oswald-Richter, A. Postdoc, B. E. Youree, J. H. Bowie, M. J. Tyler, J. M. Conlon, D. Wade, T. Dermody, C. Aiken, L. Rollins-Smith, D. Unutmaz, J. Virol., 2005, 79, 12088.CrossRefGoogle Scholar
  11. 11.
    J. R. Doyle, L. E. Llewellyn, C. S. Brinkworth, J. H. Bowie, K. L. Wegener, T. Rozek, P. A. Wabnitz, J. C. Wallace, M. J. Tyler, Eur. J. Biochem., 2002, 269, 100.CrossRefGoogle Scholar
  12. 12.
    J. R. Doyle, L. E. Llewellyn, C. S. Brinkworth, J. A. Carver, I. N. Olver, J. H. Bowie, K. L. Wegener, P. A. Wabnitz, M. J. Tyler, Eur. J. Biochem., 2003, 270, 1141.CrossRefGoogle Scholar
  13. 13.
    T. L. Pukala, J. H. Bowie, V. M. Maselli, I. F. Musgrave, M. J. Tyler, Nat. Prod. Rep., 2006, 23, 368.CrossRefGoogle Scholar
  14. 14.
    S. L. Kuz’min, Zemnovodnye byvshego SSSR [Amphibians of the Former USSR], T-vo nauchnykh izdanii KMK, Moscow, 1999, 298 pp. (in Russian).Google Scholar
  15. 15.
    J. M. Conlon, U. Aronsson, Peptide, 1997, 18, 361.CrossRefGoogle Scholar
  16. 16.
    P. A. Wabnitz, Ph. D. Thesis, Univ. Adelaide, Adelaide, 1999, 210 pp.Google Scholar
  17. 17.
    A. Anastasi, V. Ersparmer, G. Bertaccini, Comp. Biochem. Physiol., 1965, 14, 43.CrossRefGoogle Scholar
  18. 18.
    M. Simmaco, G. Mignogna, S. Canofeni, R. Miele, M. L. Mangoni, D. Barra, Eur. J. Biochem., 1996, 242, 788.CrossRefGoogle Scholar
  19. 19.
    J. R. Yates, J. Mass Spectrom., 1998, 33, 1.CrossRefGoogle Scholar
  20. 20.
    J. Peng, S. P. Gygi, J. Mass Spectrom., 2001, 36, 1083.CrossRefGoogle Scholar
  21. 21.
    P. Edman, Arch. Biochem., 1949, 2, 475.Google Scholar
  22. 22.
    P. Edman, Acta Chem. Scand., 1950, 4, 283.CrossRefGoogle Scholar
  23. 23.
    A. T. Lebedev, Mass-spektrometriya v organichskoi khimii [Mass Spectrometry in Organic Chemistry], Binom, Moscow, 2003, 493 pp. (in Russian).Google Scholar
  24. 24.
    F. Hillenkamp, J. Peter-Katalinié, MALDI MS, Eds F. Hillenkamp, J. Peter-Katalinié, Wiley-VCH, Germany, 2007, 345 pp.CrossRefGoogle Scholar
  25. 25.
    K. A. Artemenko, T. Yu. Samgina, A. T. Lebedev, Mass-spektrometriya [Mass Spectrom.], 2006, 3, 225 (in Russian).Google Scholar
  26. 26.
    P. E. Andren, M. R. Emmett, R. M. Caprioli, J. Am. Soc. Mass Spectrom., 1994, 5, 867.CrossRefGoogle Scholar
  27. 27.
    M. L. Aleksandrov, L. N. Gallr, N. V. Krasnov, V. I. Nikolaev, V. A. Pavlenko, V. A. Shkurov, G. I. Baram, M. A. Grachev, V. D. Knorre, Yu. S. Kusner, Bioorg. Khim., 1984, 10, 710 [Sov. J. Bioorg. Chem., 1984, 10 (Engl. Transl.)].Google Scholar
  28. 28.
    K. A. Artemenko, T. Yu. Samgina, A. T. Lebedev, J. R. Doil, L. E. Lryuelin, D. Bilusich, J. H. Bowie, Mass-spektrometriya [Mass Spectrom.], 2007, 4, 79 (in Russian).Google Scholar
  29. 29.
    M. Kinter, N. E. Sherman, Protein Sequencing and Identification Using Tandem Mass Spectrometry, Wiley-Interscience, New York-Chichester, 2000, 301 p.CrossRefGoogle Scholar
  30. 30.
    M. J. Tyler, D. J. M. Stone, J. H. Bowie, J. Pharm, Toxicol. Method, 1992, 28, 199.CrossRefGoogle Scholar
  31. 31.
    V. A. Gorshkov, K. A. Artemenko, T. Yu. Samgina, A. T. Lebedev, Mass-spektrometriya [Mass Spectrom.], 2007, 4, 5 (in Russian).Google Scholar
  32. 32.
    M. W. Hunkapiller, R. M. Hewick, W. J. Drewer, L. E. Hood, Methods Enzymol., 1983, 91, 399.CrossRefGoogle Scholar
  33. 33.
    H. Matsunaga, Y. Sadakane, J. Haginaka, Anal. Biochem., 2004, 331, 358.CrossRefGoogle Scholar
  34. 34.
    O. Burlet, C. Y. Yang, S. J. Gaskell, J. Am. Soc. Mass Spectrom., 1992, 3, 337.CrossRefGoogle Scholar
  35. 35.
    D. Bilusich, V. M. Maselli, C. S. Brinkworth, T. Samguina, A. T. Lebedev, J. H. Bowie, Rapid Commun. Mass Spectrom., 2005, 19, 3063.CrossRefGoogle Scholar
  36. 36.
    J. Dai, J. Wang, Y. Zhang, Z. Lu, B. Yang, X. Li, Y. Cai, X. Qian, Anal. Chem., 2005, 77, 7594.CrossRefGoogle Scholar
  37. 37.
    J. Dai, Y. Zhang, J. Wang, X. Li, Z. Lu, Y. Cai, X. Qian, Rapid Commun. Mass Spectrom., 2005, 19, 1130.CrossRefGoogle Scholar
  38. 38.
    R. S. Johnson, S. A. Martin, K. Biemann, J. T. Stults, J. T. Watson, Anal. Chem., 1987, 59, 2621.CrossRefGoogle Scholar
  39. 39.
    F. Kjeldsen, K. F. Haselmann, E. S. Sörensen, R. A. Zubarev, Anal. Chem., 2003, 75, 1267CrossRefGoogle Scholar
  40. 40.
    J. M. Conlon, J. Kolodziejek, N. Nowotny, Biochim. Biophys. Acta, 2004, 1696, 1.Google Scholar
  41. 41.
    K. A. Artemenko, PhD Theses, Dept. of Chem. M. V. Lomonosov MGU, Moscow, 2007, 150 pp. (in Russian).Google Scholar

Copyright information

© Springer Science+Business Media, Inc.  2008

Authors and Affiliations

  • T. Yu. Samgina
    • 1
  • K. A. Artemenko
    • 1
  • V. A. Gorshkov
    • 1
  • A. T. Lebedev
    • 1
  1. 1.Department of ChemistryM. V. Lomonosov Moscow State UniversityMoscowRussian Federation

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