Abstract
As a part of a project to develop a plant-made plague vaccine, we expressed the Yersinia pestis F1-V antigen fusion protein in tomato. We discovered that in some of these plants the expression of the f1-v gene was undetectable in leaves and fruit by ELISA, even though they had multiple copies of f1-v according to Southern-blot analysis. A likely explanation of these results is the phenomenon of RNA silencing, a group of RNA-based processes that produces sequence-specific inhibition of gene expression and may result in transgene silencing in plants. Here we report the reversion of the f1-v gene silencing in transgenic tomato plants through two different mechanisms. In the P19-dependent Reversion or Type I, the viral suppressor of gene silencing, P19, induces the reversion of gene silencing. In the P19-independent Reversion or Type II, the f1-v gene expression is restored after the substantial loss of gene copies as a consequence of transgene segregation in the progeny. The transient and stable expression of the p19 gene driven by a constitutive promoter as well as an ethanol inducible promoter induced a P19-dependent reversion of f1-v gene silencing. In particular, the second generation plant 3D1.6 had the highest P19 protein levels and correlated with the highest F1-V protein accumulation, almost a three-fold increase of F1-V protein levels in fruit than that previously reported for the non-silenced F1-V elite tomato lines. These results confirm the potential exploitation of P19 to substantially increase the expression of value-added proteins in plants.
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Abbreviations
- PTGS:
-
Post-transcriptional gene silencing
- RDR:
-
RNA-dependent RNA polymerase.
- RISC:
-
RNA-induced silencing complex
- TGS:
-
Transcriptional gene silencing
- TBSV-P19 or P19:
-
19 kDa viral suppressor protein of TBSV
- TBSV:
-
Tomato bushy stunt virus
- TSP:
-
Total soluble protein
- dsRNA:
-
Double-stranded RNA
- miRNA:
-
Micro RNA
- sRNA:
-
Small RNA
- siRNA:
-
Short interfering RNA
- ssRNA:
-
Single-stranded RNA
- ta-siRNA:
-
Trans-acting short interfering RNA
- VIGS:
-
Virus-induced gene silencing
References
Alvarez ML, Guelman S, Halford NG, Lustig S, Reggiardo MI, Ryabushkina N, Shewry P, Stein J, Vallejos RH (2000) Silencing of HMW glutenins in transgenic wheat expressing extra HMW subunits. Theor Appl Genet 100:319–327
Alvarez ML, Pinyerd HL, Crisantes JD, Rigano MM, Pinkhasov J, Walmsley AM, Mason HS, Cardineau GA (2006) Plant-made subunit vaccine against pneumonic and bubonic plague is orally immunogenic in mice. Vaccine 24:2477–2490
Baulcombe DC (2004) RNA silencing in plants. Nature 431:356–363
Becker D, Kemper E, Schell J, Materson R (1992) New plant binary vectors with selectable markers located proximal to the left T-DNA border. Plant Mol Biol 20:1195–1197
Beclin C, Boutet S, Waterhouse P, Vaucheret H (2002) A branched pathway for transgene-induced RNA silencing in plants. Curr Biol 12:684–688
Bernstein E, Caudy A, Hammond S, Hannon G (2001) Role for a bidentate ribonuclease in the initiation step of RNA interference. Nature 409:363–366
Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72:248
Brodersen P, Voinnet O (2006) The diversity of RNA silencing pathways in plants. Trends in Genet 22:268–280
Chapman EJ, Prokhnevsky AI, Gopinath K, Dolja V, Carrington JC (2004) Viral RNA silencing suppressors inhibit the miRNA pathway at an intermediate step. Genes Dev 18:1179–1186
Curtiss R, Cardineau GA (1990) Oral immunization by transgenic plants. World patent application WO 90/02484, 22 March 1990
De Buck S, Jacobs A, Van Montagu M, Depicker A (1999) The DNA sequences of T-DNA junctions suggest that complex T-DNA loci are formed by a recombination process resembling T-DNA integration. Plant J 20:295–304
De Buck S, Van Montagu M, Depicker A (2001) Transgene silencing of invertedly repeated transgenes is released upon deletion of one of the transgenes involved. Plant Mol Biol 46:433–445
De Wilde C, Van Houdt H, De Buck S, Angenon G, De Jaeger G, Depicker A (2000) Plants as bioreactors for protein production: avoiding the problem of Transgene silencing. Plant Mol Biol 43:347–359
Deveaux Y, Peaucelle A, Roberts GR, Coen E, Simon R, Mizukami Y, Traas J, Murray JA, Doonan JH, Laufs P (2003) The ethanol switch: a tool for tissue-specific gene induction during plant development. Plant J 36:918–930
Dunoyer P, Lecellier CH, Parizotto EA, Himber Ch, Voinnet O (2004) Probing the MicroRNA and small interfering RNA pathway with virus-encoded suppressors of RNA silencing. The Plant Cell 16:1235–1250
Elmayan T, Vaucheret H (1996) Expression of single copies of a strongly expressed 35S transgene can be silenced post-transcriptionally. Plant J 9:787–797
Hammond SM, Bernstein E, Beach D, Hannon GJ (2000) An RNA-directed nuclease mediates post-transcriptional gene silencing in Drosophila cells. Nature 404:293–296
Haq T, Mason H, Clements J, Arntzen Ch (1995) Oral immunization with a recombinant bacterial antigen produced in transgenic plants. Science 268:714–716
Hearne P, Knorr D, Hillman B, Morris T (1990) The complete genome structure and synthesis of infectious RNA from clones of Tomato Bushy Stunt Virus. Virology 177:141–151
Heath D, Anderson G, Mauro M, Welkos S, Andrews G, Adamovicz J (1998) Protection against experimental bubonic and pneumonic plague by recombinant capsular F1-V antigen fusion protein vaccine. Vaccine 16:1131–1137
Hoekema A, Hirsch PR, Hooykas PJJ, Schilpperoort RA (1983) A binary plant vector strategy based on separation of vir-and T-region of the Agrobacterium tumefasiens Ti plasmid. Nature 303:179–180
Hood E, Gelvin S, Melchers S, Hoekema A (1993) New Agrobacterium helper plasmids for gene transfer to plants. Transgenic Res 2:208–218
Jorgensen RA, Cluster PD, English J, Que Q, Napoli CA (1996) Chalcone synthase cosuppression phenotypes in petunia flowers: comparison of sense vs. antisense constructs and single-copy vs. complex T-DNA sequences. Plant Mol Biol 31:957–973
Kapila J, De Rycke R, Van montagu M, Angenon G (1997) An Agrobaterium-mediated transient gene expressión system for intact leaves. Plant Sci 122:101–108
Lakatos L, Szittya G, Silhavy D, Burgyan J (2004) Molecular mechanism of RNA silencing suppression mediated by p19 protein of tombusviruses. EMBO J 23:876–884
Lakatos L, Csorba T, Pantaleo V, Chapman EJ, Carrington JC, Liu Y, Dolja V, Fernandez Calvino L, Lopez-moya J, Burguyan J (2006) Small RNA binding is a common strategy to suppress RNA silencing by several viral suppressors. EMBO J 25:2768–2780
Li F, Ding S (2006) Virus counter-defense: diverse strategies for evading the RNA-silencing immunity. Annu Rev Microbiol 60:503–531
Lippman Z, Martienssen R (2004) The role of RNA interference in heterochromatic silencing. Nature 431:364–370
Mallory AC, Parks G, Endres MW, Baulcombe D, Bowman LH, Pruss GJ, Vance VB (2002) The amplicon-plus system for high-level expression of transgenes in plants. Nat Biotechnol 20:622–625
Marathe R, Smith TH, Anandalakshmi R, Bowman LH, Fagard M, Mourrain P, Vaucheret H, Vance VB (2000) Plant viral suppressors of post-transcriptional silencing do not suppress transcriptional silencing. Plant J 22:51–59
Matzke MA, Priming M, Trnovsky J, Matzke AJ (1989) Reversible methylation and inactivation of marker genes in sequentially transformed tobacco plants. EMBO J 8:643–649
Meins F, Si-Ammour A, Blevins T (2005) RNA silencing systems and their relevance to plant development. Annu Rev Cell Dev Biol 21:297–318
Moissiard G, Voinnet O (2004) Viral suppression of RNA silencing in plants. Mol Plant Pathol 5:71–82
Mor TS, Mason HS, Kirk DD, Arntzen CA, Cardineau GA (2004) Plants as a production and delivery vehicles for orally delivered subunit vaccines. In: Levine MM, Woodrow GC, Kaper JB, Cobon GS (eds) New generation vaccines, 3rd edn. Marcel Dekker, New York, pp 305–311
Napoli C, Lemieux C, Jorgensen R (1990) Introduction of a chimeric chalcone synthase gene into petunia results in reversible co-suppression of homologous gene in trans. Plant Cell 2:279–289
Oksman-Caldentey KM, Barz W (eds) (2002) Plant biotechnology and transgenic plants. Marcel Dekker, New York
Omarov R, Sparks K, Smith L, Zindovic J, Scholthof HB (2006) Biological relevance of a stable biochemical interaction between the tombusvirus-encoded P19 and short interfering RNAs. J Virol 80:3000–3008
Palatnik J, Alle E, Wu X, Schommer C, Schwab R, Carrington JC, Weigel D (2003) Control of leaf morphogenesis by microRNAs. Nature 425:257–263
Papp I, Mette MF, Aufzats W, Daxinger L, Schauer SE, Ray A, Van der Winden J, Matzke M, Matzke AJ (2003) Evidence for nuclear processing of plant micro RNA and short interfering RNA precursors. Plant Physiol 132:1382–1390
Qiu W, Park JW, Scholthof HB (2002) Tombosvirus P19-mediated suppression of virus-induced gene silencing is controlled by genetic and dosage features that influence pathogenicity. Mol Plant Microbe Interact 15:269–280
Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP (2002) Prediction of plant microRNA targets. Cell 110:513–520
Roth BM, Pruss GJ, Vance VB (2004) Plant viral suppresors of RNA silencing. Virus Res 102:97–108
Ru P, Xu L, Ma H, Huang H (2006) Plant fertility defects induced by the enhanced expression of micro-RNA167. Cell Res 16:457–465
Sambrook J, Fisher E, Maniatis T (1981) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York
Scholthof H (2006) The Tombusvirus-encoded P19: from irrelevance to elegance. Nat Rev Microbiol 4:405–411
Scholthof H, Morris T, Jackson A (1993) The capsid protein gene of Tomato Bushy Stunt Virus is dispensable for systemic movement and can be replaced for localized expression of foreign genes. Mol Plant Microbe Interact 6:309–322
Siddiqui S, Sarmiento C, Truve E, Lehto H, Lehto K (2008) Phenotypes and functional effects caused by various viral RNA silencing suppressors in transgenic Nicotiana benthamiana and N. tabacum. Mol Plant Microbe Interact 21:178–187
Silhavy D, Molnar A, Lucioli A, Sitia G, Homyik C, Tavazza M, Burgyan J (2002) A viral protein suppresses RNA silencing and binds, silencing-generated, 21 to 25-nucleotide double-stranded RNAs. EMBO J 21:3070–3080
Sweetman JP, Chu C, Greenland AJ, Sonnewald U, Jepson I (2002) Ethanol vapor is an efficient inducer of the alc gene expression system in model and crop plant species. Plant Physiol 129:943–948
Tang W, Newton RJ, Weidner DA (2007) Genetic transformation and gene silencing mediated by multiple copies of a transgene in eastern white pines. J Exp Bot 58:545–554
Thanavala Y, Huang Z, Mason HS (2006) Plant-derived vaccines: a look back at the highlights and a view to the challenges on the road ahead. Expert Rev Vaccines 5:249–260
Thompson C, Movva N, Tizard R, Crameri R, Davies J, Lauwereys M, Botterman J (1987) Characterization of the herbicide resistance gene bar from Streptomyces hygroscopicus. EMBO J 6:2519–2523
Van der Krol AR, Mur LA, Beld M, Mol JNM, Stuitje AR (1990) Flavonoid genes in petunia: addition of a limited number of gene copies may lead to a suppression of gene expression. Plant Cell 2:291–299
Vaucheret H (2005) Micro-RNA dependent Trans-Acting siRNA production. Sci STKE 300:43
Vaucheret H, Beclin Ch, Elmayan T, Feuerbach F, Godon Ch, Morel JB, Mourrain P, Paulaqui JC, Vernhettes S (1998) Transgene-induced gene silencing in plants. Plant J 16:651–619
Voinnet O (2001) RNA silencing as a plant immune system against viruses. Trends Genet 17:449–459
Voinnet O (2005) Induction and suppression of RNA silencing: insights from viral infections. Nat Rev Genet 6:206–220
Voinnet O, Pinto YM, Baulcombe DC (1999) Suppression of gene silencing : A general strategy used by diverse DNA and RNA viruses in plants. Proc Natl Acad Sci USA 99:14147–14152
Voinnet O, Rivas S, Mestre P, Baulcombe D (2003) An enhanced transient expression system in plants based on suppression of gene silencing by the p19 protein of tomato bushy stunt virus. Plant J 33:949–956
Walmsley AM, Alvarez ML, Jin Y, Kirk DD, Lee SM, Pinkhasov J, Rigano MM, Arntzen Ch, Mason H (2003) Expression of the B subunit of Escherichia coli heat-labile enterotoxin as a fusion protein in transgenic tomato. Plant cell Rep 21:1020–1026
Ye K, Malinina L, Patel DJ (2003) Recognition of small interfering RNA by a viral suppressor of RNA silencing. Nature 426:874–878
Zamore PD, Tuschl T, Sharp PA, Bartel DP (2000) RNAi: double-stranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotides intervals. Cell 101:25–33
Acknowledgments
We are very grateful to Dr. Herman Scholthof for providing the pTBSV-100 and the primary antibody against TBSV-P19, and to Dr. Hugh Mason for plasmid pAlc:p19. We want to thank Angela Rojas and Mike Ewing for technical assistance with tissue culture and to Jason Crisantes for maintenance of the tomato plants at the greenhouse facilities. The authors are also very grateful with Paul Arnold for his help with the editing of the paper. This project was partially supported by the US Department of Defense grant DAMD17–02-2-0015.
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Alvarez, M.L., Pinyerd, H.L., Topal, E. et al. P19-dependent and P19-independent reversion of F1-V gene silencing in tomato. Plant Mol Biol 68, 61–79 (2008). https://doi.org/10.1007/s11103-008-9352-2
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DOI: https://doi.org/10.1007/s11103-008-9352-2