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Characterization of polymorphic loci for two cicada species: Cryptotympana atrata and Hyalessa fuscata (Hemiptera: Cicadoidae)

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A Correction to this article was published on 24 May 2019

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Abstract

The cicada species Cryptotympana atrata and Hyalessa fuscata are abundant in metropolitan Seoul where their population densities are positively correlated with local urban heat island intensities. Here, we characterized two panels of polymorphic markers for both species. A set of 21 microsatellite markers previously developed for a Chinese population of C. atrata were tested for the Korean population. Fifteen of the tested loci were found to be polymorphic in the target population. The number of alleles per locus ranged from 2 to 12, with observed and expected heterozygosities ranging from 0.2 to 1 and 0.06667 to 0.92644, respectively. Four of the tested loci were moderately polymorphic, and the rest were highly polymorphic. For H. fuscata, a novel panel of microsatellite markers was generated using a next-generation sequencing technique and 18 polymorphic loci were identified in the target population. The number of alleles per locus was between 3 and 16, with observed and expected heterozygosities ranging from 0.02222 to 0.97778 and 0.16804 to 0.86181, respectively. Polymorphism level was low in one locus, moderate in five loci, and high in the remaining loci. The microsatellite markers described in this study will be useful for identifying genetic structure and genetic differentiation among populations of C. atrata and H. fuscata in metropolitan Seoul.

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Change history

  • 24 May 2019

    Unfortunately the title of the original publication contains a typo. Instead of (Hemiptera: Cicadoidae) it should be (Hemiptera: Cicadidae).

References

  1. Selkoe KA, Toonen RJ (2006) Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers. Ecology letters 9(5):615–629

    Article  PubMed  Google Scholar 

  2. Vieira MLC, Santini L, Diniz AL, Munhoz CdF (2016) Microsatellite markers: what they mean and why they are so useful. Genetics molecular biology 39(3):312–328

    Article  PubMed  PubMed Central  Google Scholar 

  3. Zhu W, Li H, Zhang H, Zhang H, Lv T, Xue S, Chen J (2016) Isolation and characterization of twenty-one novel microsatellite loci for the black cicada, Cryptotympana atrata. Applied entomology zoology 51(3):511–514

    Article  Google Scholar 

  4. Heras S, Planella L, Caldarazzo I, Vera M, García-Marín J-L, Roldán MI (2016) Development and characterization of novel microsatellite markers by Next Generation Sequencing for the blue and red shrimp Aristeus antennatus. PeerJ 4:e2200

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  5. Souza DCL, Rossini BC, de Souza FB, Sebbenn AM, Marino CL, de Moraes MLT (2018) Development of microsatellite markers for Myracrodruon urundeuva (FF & MF Allemão), a highly endangered species from tropical forest based on next-generation sequencing. Molecular biology reports 45(1):71–75

    Article  CAS  PubMed  Google Scholar 

  6. Waikham P, Thongkumkoon P, Chomdej S, Liu A, Wangpakapattanawong P (2018) Development of 13 microsatellite markers for Castanopsis tribuloides (Fagaceae) using next-generation sequencing. Molecular biology reports 45(1):27–30

    Article  CAS  PubMed  Google Scholar 

  7. Kim TE, Oh S-Y, Chang E, Jang Y (2014) Host availability hypothesis: complex interactions with abiotic factors and predators may best explain population densities of cicada species. Animal Cells Systems 18(2):143–153

    Article  Google Scholar 

  8. Nguyen HQ, Andersen DK, Kim Y, Jang Y (2018) Urban heat island effect on cicada densities in metropolitan Seoul. PeerJ 6:e4238

    Article  PubMed  PubMed Central  Google Scholar 

  9. Van Oosterhout C, Hutchinson WF, Wills DP, Shipley P (2004) MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Molecular Ecology Resources 4(3):535–538

    Google Scholar 

  10. Peakall R, Smouse PE (2006) GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Resources 6(1):288–295

    Google Scholar 

  11. Peakall R, Smouse E (2012) GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research—an update. Bioinformatics 28:2537–2539

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  12. Kalinowski ST, Taper ML, Marshall TC (2007) Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment. Molecular ecology 16(5):1099–1106

    Article  PubMed  Google Scholar 

  13. Excoffier L, Laval G, Schneider S (2005) Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evolutionary bioinformatics 1:117693430500100003

    Article  Google Scholar 

  14. Rice WR (1989) Analyzing tables of statistical tests. Evolution 43(1):223–225

    Article  PubMed  Google Scholar 

  15. Hamilton M (2011) Population genetics. John Wiley & Sons

  16. Buchman A, Deaton R, Randle C, Brummel T, Wilson E, Lutterschmidt W (2009) Isolation and characterization of polymorphic microsatellite loci for the three-toed box turtle (Terrapene carolina triunguis) and cross-amplification in other Terrapene species. Molecular ecology resources 9(4):1169–1171

    Article  CAS  PubMed  Google Scholar 

  17. Isoda K, Watanabe A (2006) Isolation and characterization of microsatellite loci from Larix kaempferi. Molecular Ecology Resources 6(3):664–666

    CAS  Google Scholar 

  18. Sun J, Li J, Yang X, Hong X (2012) Development and characterization of nine polymorphic microsatellites for the small brown planthopper Laodelphax striatellus (Hemiptera: Delphacidae). Genet Mol Res 11(2):1526–1531

    Article  CAS  PubMed  Google Scholar 

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Funding

Funding was provided by National Research Foundation of Korea (Grant No. 2015R1A4A1041997).

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Correspondence to Yikweon Jang.

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Nguyen, H.Q., Chae, S., Kim, E. et al. Characterization of polymorphic loci for two cicada species: Cryptotympana atrata and Hyalessa fuscata (Hemiptera: Cicadoidae). Mol Biol Rep 46, 1555–1561 (2019). https://doi.org/10.1007/s11033-018-4571-3

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