Journal of Mathematical Chemistry

, Volume 55, Issue 2, pp 423–435 | Cite as

Performance of a rigid rod statistical mechanical treatment to predict monolayer ordering: a study of chain interactions and comparison with molecular dynamics simulation

  • William A. Alexander
Original Paper


A statistical mechanical model that treats hydrocarbon self-assembled monolayer (SAM) chains as rigid rods is examined to interrogate the mechanisms involved in monolayer ordering. The statistical mechanical predictions are compared to fully atomistic molecular dynamics simulations of SAMs with different packing densities. The monolayer chain order is examined as a function of surface coverage, chain-surface interactions, and chain–chain interactions. Reasonable interaction potentials are deduced from ab initio electronic structure calculations of small model systems. It is found that the chain-surface interaction is the most important parameter in formation of flat-lying monolayer phases, while formation of standing phase monolayers is driven most importantly by increased density of molecules at the surface. A brief discussion of the utility and validity of the rigid rod treatment is given in light of the molecular dynamics results.


Self-assembled monolayers Molecular dynamics Rigid rod statistical mechanics Alkylthiols Surface ordering 



I am grateful for support through The University of Memphis College of Arts and Science Faculty Research Grant Program and through the Computational Research on Materials at The University of Memphis (CROMIUM). Computational resources were also provided on the Lonestar system at the Texas Advanced Computing Center (TACC) under the National Science Foundation XSEDE grant number TG-CHE110109. Additionally, I thank Prof. Louis A. Madsen for helpful discussions of an early version of this work.


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Copyright information

© Springer International Publishing Switzerland 2016

Authors and Affiliations

  1. 1.Department of ChemistryThe University of MemphisMemphisUSA

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