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Detection of Bifidobacterium Species-specific 16S rDNA Based on QD FRET Bioprobe

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Abstract

Fluorescence resonance energy transfer (FRET) that consists of quantum dot as donors and organic fluorophore dyes as acceptors has been a very important method to detect biomolecules such as nucleic acids. In this work, we established a new FRET detection system of Bifidobacterium species-specific 16S rDNA using QD—ROX FRET bioprobe, in which 525 nm QD-DNA conjugation consisted of the carboxyl-modified QD and the amino-modified DNA in the presence of EDC. Both ROX-DNA and the conjugation above could hybridize with the target DNA after forming the QD—ROX bioprobe. When the hybridization made the distance between the QD and ROX to meet FRET effect needed, 525 nm QD fluorescence intensity decreased and ROX fluorescence intensity increased. In the control, there was no notable change of fluorescence intensities without target DNA. It is very clear that the change of the QD and ROX fluorescence intensities provide the good base and guaranty for this rapid and simple detection system.

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References

  1. Bruchez M Jr, Moronne M, Gin P, Weiss S, Alivisatos AP (1998) Semiconductor nanocrystals as fluorescent biological labels. Science 281(5385):2013–2016

    Article  CAS  PubMed  Google Scholar 

  2. Watson. A, Wu. X , Bruchez. M, (2003), Lighting up cells with quantum dots, Biotechniques. 4(2), 296–300, 302–303

  3. Samia AC, Dayal S, Burda C (2006) Quantum dot-based energy transfer: perspectives and potential for applications in photodynamic therapy. Photochem Photobiol 82(3):617–625

    Article  CAS  PubMed  Google Scholar 

  4. Gill R, Zayats M, Willner I (2008) Semiconductor Quantum Dots for Bioanalysis. Biosensors 47(40):7602–7625

    CAS  Google Scholar 

  5. Kherlopian AR, Song T, Duan Q, Neimark MA, Po MJ, Gohagan JK, Laine AF (2005) A review of imaging techniques for systems biology. BMC Syst Biol 2:74

    Article  Google Scholar 

  6. Sukhanova A, Nabiev I (2008) Fluorescent nanocrystal-encoded microbeads for multiplexed cancer imaging and diagnosis. Crit Rev Oncol Hematol 68(1):39–59

    Article  PubMed  Google Scholar 

  7. Misra RD (2008) Quantum dots for tumor-targeted drug delivery and cell imaging. Nanomed 3(3):271–274

    Article  CAS  Google Scholar 

  8. Kim S, Bawendi MG (2003) Oligomeric ligands for luminescent and stable nanocrystal quantum dots. J Am Chem Soc 125(48):14652–14653

    Article  CAS  PubMed  Google Scholar 

  9. Yu. K, Zaman. B, Romanova. S, Wang. D. S, Ripmeester. J. A, (2005), Sequential Synthesis of Type II Colloidal CdTe/CdSe Core-Shell Nanocrystals, small. 1(3), 332–338

  10. Cady NC, Strickland AD, Batt CA (2007) Optimized linkage and quenching strategies for quantum dot molecular beacons. Mol Cell Probes 21:116–124

    Article  CAS  PubMed  Google Scholar 

  11. Huang S, Xiao Q, He ZK, Liu Y, Tinnefeld P, Su XR, Peng XN (2008) A high sensitive and specific QDs FRET bioprobe for MNase. Chem Commun 7(45):5990–5992

    Article  Google Scholar 

  12. Xu C, Xing B, Rao J (2006) A self-assembled quantum dot probe for detecting beta-lactamase activity. Biochem Biophys Res Commun 344(3):931–935

    Article  CAS  PubMed  Google Scholar 

  13. Liu HY, Vu TQ (2007) Identification of Quantum Dot Bioconjugates and Cellular Protein Co-localization by Hybrid Gel Blotting. Nano Lett 7(4):1044–1049

    Article  CAS  PubMed  Google Scholar 

  14. Numnuam A, Chumbimuni-Torres KY, Xiang Y, Bash R, Thavarungkul P, Kanatharana P, Pretsch E, Wang J, Bakker E (2008) Aptamer-Based Potentiometric Measurements of Proteins Using Ion-Selective Microelectrodes. Anal Chem 80(3):707–712

    Article  CAS  PubMed  Google Scholar 

  15. Ma N, Dooley CJ, Kelley SO (2006) RNA-Templated Semiconductor Nanocrystals. J Am Chem Soc 128(39):12598–12599

    Article  CAS  PubMed  Google Scholar 

  16. Ho YP, Kung MC, Yang S, Wang TH (2005) Multiplexed Hybridization Detection with Multicolor Colocalization of Quantum Dot Nanoprobes. Nano Lett 5(9):1693–1697

    Article  CAS  PubMed  Google Scholar 

  17. Edgar R, McKinstry M, Hwang J, Oppenheim AB, Fekete RA, Giulian G, Merril C, Nagashima K, Adhya S (2006) High-sensitivity bacterial detection using biotin- tagged phage and quantum-dot nanocomplexes. PNAS. 103(13):4841–4845

    Article  CAS  PubMed  Google Scholar 

  18. Song L, Ahn S, Walt DR (2005) Detecting biological warfare agents. Anal Chem 11(10):1629–1632

    CAS  Google Scholar 

  19. Chen Z, Li G, Zhang L, Jiang JJ, Li Z, Peng Z, Deng L (2008) A new method for the detection of ATP using a quantum-dot-tagged aptamer. Anal Bioanal Chem 392(6):1185–1188

    Article  CAS  PubMed  Google Scholar 

  20. Kok RG, de Waal A, Schut F, Welling GW, Weenk G, Hellingwerf KJ (1996) Specific detection and analysis of a probiotic Bifidobacterium strain in infant feces. Appl Environ Microbiol. 62(10):3668–3672

    CAS  PubMed  Google Scholar 

  21. Wang RF, Cao WW, Cerniglia CE (1996) PCR detection and quantitation of predominant anaerobic bacteria in human and animal fecal samples. Appl Environ Microbiol 62(4):1242–1247

    CAS  PubMed  Google Scholar 

  22. Kaufmann P, Pfefferkorn A, Teuber M, Meile L (1997) Identification and quantification of Bifidobacterium species isolated from food with genus-specific 16 S rRNA-targeted probes by colony hybridization and PCR. Appl EnvironMicrobiol. 63(4):1268–1273

    CAS  Google Scholar 

  23. Matsuki T, Watanabe K, Tanaka R, Fukuda M, Oyaizu H (1999) Distribution of bifidobacterial species in human intestinal microflora examined with 16 S rRNA-gene-targeted species-specific primers. Appl Environ Microbiol 65(10):4506–4512

    CAS  PubMed  Google Scholar 

  24. Hermanson GT (1996) Bioconjugate techniques. Academic Press, New York

    Google Scholar 

  25. Mattoussi H, Mauro JM, Goldman ER, Anderson GP, Sundar VC, Mikulec FV, Bawendi MG (2000) Self-Assembly of CdSe–ZnS Quantum Dot Bioconjugates Using an Engineered Recombinant Protein. J Am Chem Soc 122(49):12142–12150

    Article  CAS  Google Scholar 

  26. Clapp AR, Medintz IL, Mauro JM, Fisher BR, Bawendi MG, Mattoussi H (2004) Fluorescence resonance energy transfer between quantum dot donors and dye-labeled protein acceptors. J Am Chem Soc 126(1):301–310

    Article  CAS  PubMed  Google Scholar 

  27. Hohng S, Ha T (2005) Single-molecule quantum-dot fluorescence resonance energy transfer. Chemphyschem 6(5):956–60

    Article  CAS  PubMed  Google Scholar 

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Correspondence to Le Deng.

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Junfeng Jiang and Zhihui Peng contributed equally to this work.

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Jiang, J., Peng, Z., Deng, L. et al. Detection of Bifidobacterium Species-specific 16S rDNA Based on QD FRET Bioprobe. J Fluoresc 20, 365–369 (2010). https://doi.org/10.1007/s10895-009-0513-8

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  • DOI: https://doi.org/10.1007/s10895-009-0513-8

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