Table 14 Number of deviations, |S2(exp) − S2(MD)|, for the 51 S2CH-values, the 11 S2NH-values of Trp and Arg residues and the 17 S2NH2-values of Asn and Gln residues, respectively (Smith et al. 2020), in the four unrestrained MD simulations starting from four different X-ray crystal structures and in the 3J-coupling time-averaging local-elevation restrained MD simulations starting from the 2VB1 X-ray crystal structure and using different sets of backbone and side-chain restraints. Order parameter values are reported in Table S2 in Supporting Information
From: On the use of 3J-coupling NMR data to derive structural information on proteins
Simulation | Size of S2 deviation | |||||
---|---|---|---|---|---|---|
0.05–0.1 | 0.1–0.2 | 0.2–0.3 | 0.3–0.4 | 0.4–0.5 | > 0.5 | |
MD_2VB1 | 7/2/6 | 12/3/5 | 9/0/2 | 6/1/1 | 5/0/0 | 1/0/0 |
MD_4LZT | 6/5/5 | 11/3/6 | 8/1/2 | 7/0/0 | 1/0/0 | 1/0/0 |
MD_1IEE | 9/3/6 | 11/1/5 | 9/2/1 | 5/1/1 | 1/0/0 | 3/0/0 |
MD_1AKI | 7/4/5 | 6/4/6 | 16/1/1 | 8/0/1 | 0/0/0 | 2/0/0 |
MD_2VB1_bb1 + bb2 | 10/4/3 | 14/4/6 | 8/0/2 | 6/1/0 | 1/0/0 | 2/0/0 |
MD_2VB1_sc1 | 11/4/8 | 7/4/4 | 12/1/1 | 2/0/0 | 3/0/0 | 3/0/0 |
MD_2VB1_sc1 + sc2 | 7/3/7 | 6/1/3 | 9/5/2 | 6/0/0 | 6/0/0 | 3/0/0 |
MD_2VB1_bb1 + bb2 + sc1 + sc2 | 8/4/3 | 8/5/4 | 7/0/4 | 4/1/0 | 5/0/0 | 1/0/0 |