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Residue-specific membrane location of peptides and proteins using specifically and extensively deuterated lipids and 13C–2H rotational-echo double-resonance solid-state NMR

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Abstract

Residue-specific location of peptides in the hydrophobic core of membranes was examined using 13C–2H REDOR and samples in which the lipids were selectively deuterated. The transmembrane topology of the KALP peptide was validated with this approach with substantial dephasing observed for deuteration in the bilayer center and reduced or no dephasing for deuteration closer to the headgroups. Insertion of β sheet HIV and helical and β sheet influenza virus fusion peptides into the hydrophobic core of the membrane was validated in samples with extensively deuterated lipids.

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References

  • Balbach JJ, Ishii Y, Antzutkin ON, Leapman RD, Rizzo NW, Dyda F, Reed J, Tycko R (2000) Amyloid fibril formation by Aβ16-22, a seven-residue fragment of the Alzheimer’s β-amyloid peptide, and structural characterization by solid state NMR. Biochemistry 39:13748–13759

    Article  Google Scholar 

  • Brugger B, Glass B, Haberkant P, Leibrecht I, Wieland FT, Krasslich HG (2006) The HIV lipidome: a raft with an unusual composition. Proc Natl Acad Sci USA 103:2641–2646

    Article  ADS  Google Scholar 

  • Buffy JJ, Hong T, Yamaguchi S, Waring AJ, Lehrer RI, Hong M (2003) Solid-state NMR investigation of the depth of insertion of protegrin-1 in lipid bilayers using paramagnetic Mn2+. Biophys J 85:2363–2373

    Article  Google Scholar 

  • Cady SD, Schmidt-Rohr K, Wang J, Soto CS, DeGrado WF, Hong M (2010) Structure of the amantadine binding site of influenza M2 proton channels in lipid bilayers. Nature 463:689–693

    Article  ADS  Google Scholar 

  • de Planque MRR, Goormaghtigh E, Greathouse DV, Koeppe RE, Kruijtzer JAW, Liskamp RMJ, de Kruijff B, Killian JA (2001) Sensitivity of single membrane-spanning alpha-helical peptides to hydrophobic mismatch with a lipid bilayer: effects on backbone structure, orientation, and extent of membrane incorporation. Biochemistry 40:5000–5010

    Article  Google Scholar 

  • Doherty T, Waring A, Hong M (2006) Membrane-bound conformation and topology of the antimicrobial peptide tachyplesin I by solid-state NMR. Biochemistry 45:13323–13330

    Article  Google Scholar 

  • Gallagher GJ, Hong M, Thompson LK (2004) Solid-state NMR spin diffusion for measurement of membrane-bound peptide structure: gramicidin A. Biochemistry 43:7899–7906

    Article  Google Scholar 

  • Gullion T (1998) Introduction to rotational-echo, double-resonance NMR. Concept Magn Reson 10:277–289

    Article  Google Scholar 

  • Gullion T (1999) A comparison between REDOR and θ-REDOR for measuring 13C–2D dipolar interactions in solids. J Magn Reson 139:402–407

    Article  ADS  Google Scholar 

  • Gullion T, Kishore R, Asakura T (2003) Determining dihedral angles and local structure in silk peptide by 13C–2H REDOR. J Am Chem Soc 125:7510–7511

    Article  Google Scholar 

  • Han X, Tamm LK (2000) A host-guest system to study structure-function relationships of membrane fusion peptides. Proc Natl Acad Sci USA 97:13097–13102

    Article  ADS  Google Scholar 

  • Hirsh DJ, Lazaro N, Wright LR, Boggs JM, McIntosh TJ, Schaefer J, Blazyk J (1998) A new monofluorinated phosphatidylcholine forms interdigitated bilayers. Biophys J 75:1858–1868

    Article  Google Scholar 

  • Huster D, Yao XL, Hong M (2002) Membrane protein topology probed by H-1 spin diffusion from lipids using solid-state NMR spectroscopy. J Am Chem Soc 124:874–883

    Article  Google Scholar 

  • Jaroniec CP, Tounge BA, Rienstra CM, Herzfeld J, Griffin RG (1999) Measurement of 13C–13–15 N distances in uniformly 13C labeled biomolecules: j-decoupled REDOR. J Am Chem Soc 121:10237–10238

    Article  Google Scholar 

  • Long HW, Tycko R (1998) Biopolymer conformational distributions from solid-state NMR: alpha-helix and 3(10)-helix contents of a helical peptide. J Am Chem Soc 120:7039–7048

    Article  Google Scholar 

  • McDermott A (2009) Structure and dynamics of membrane proteins by magic angle spinning solid-state NMR. Ann Rev Biophys 38:385–403

    Article  MathSciNet  Google Scholar 

  • Pan JH, Lai CB, Scott WRP, Straus SK (2010) Synthetic fusion peptides of tick-borne encephalitis virus as models for membrane fusion. Biochemistry 49:287–296

    Article  Google Scholar 

  • Qiang W, Bodner ML, Weliky DP (2008) Solid-state NMR spectroscopy of human immunodeficiency virus fusion peptides associated with host-cell-like membranes: 2D correlation spectra and distance measurements support a fully extended conformation and models for specific antiparallel strand registries. J Am Chem Soc 130:5459–5471

    Article  Google Scholar 

  • Qiang W, Sun Y, Weliky DP (2009) A strong correlation between fusogenicity and membrane insertion depth of the HIV fusion peptide. Proc Natl Acad Sci USA 106:15314–15319

    Article  ADS  Google Scholar 

  • Sack I, Balazs YS, Rahimipour S, Vega S (2000) Solid-state NMR determination of peptide torsion angles: applications of 2H-dephased REDOR. J Am Chem Soc 122:12263–12269

    Article  Google Scholar 

  • Schaefer J (1999) REDOR-determined distances from heterospins to clusters of 13C labels. J Magn Reson 137:272–275

    Article  ADS  Google Scholar 

  • Schmidt A, McKay RA, Schaefer J (1992) Internuclear distance measurement between deuterium (I = 1) and a spin-1/2 nucleus in rotating solids. J Magn Reson 96:644–650

    Google Scholar 

  • Toke O, Maloy WL, Kim SJ, Blazyk J, Schaefer J (2004) Secondary structure and lipid contact of a peptide antibiotic in phospholipid bilayers by REDOR. Biophys J 87:662–674

    Article  Google Scholar 

  • Tristram-Nagle S, Nagle JF (2004) Lipid bilayers: thermodynamics, structure, fluctuations, and interactions. Chem Phys Lipids 127:3–14

    Article  Google Scholar 

  • White JM, Delos SE, Brecher M, Schornberg K (2008) Structures and mechanisms of viral membrane fusion proteins: multiple variations on a common theme. Crit Rev Biochem Mol Biol 43:189–219

    Article  Google Scholar 

  • Yang J, Gabrys CM, Weliky DP (2001) Solid-state nuclear magnetic resonance evidence for an extended beta strand conformation of the membrane-bound HIV-1 fusion peptide. Biochemistry 40:8126–8137

    Article  Google Scholar 

  • Yang J, Parkanzky PD, Bodner ML, Duskin CG, Weliky DP (2002) Application of REDOR subtraction for filtered MAS observation of labeled backbone carbons of membrane-bound fusion peptides. J Magn Reson 159:101–110

    Article  ADS  Google Scholar 

  • Zhang HY, Neal S, Wishart DS (2003) RefDB: a database of uniformly referenced protein chemical shifts. J Biomol NMR 25:173–195

    Article  Google Scholar 

  • Zheng Z, Yang R, Bodner ML, Weliky DP (2006) Conformational flexibility and strand arrangements of the membrane-associated HIV fusion peptide trimer probed by solid-state NMR spectroscopy. Biochemistry 45:12960–12975

    Article  Google Scholar 

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Acknowledgments

The research was supported by NIH AI47153.

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Correspondence to David P. Weliky.

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Xie, L., Ghosh, U., Schmick, S.D. et al. Residue-specific membrane location of peptides and proteins using specifically and extensively deuterated lipids and 13C–2H rotational-echo double-resonance solid-state NMR. J Biomol NMR 55, 11–17 (2013). https://doi.org/10.1007/s10858-012-9692-8

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  • DOI: https://doi.org/10.1007/s10858-012-9692-8

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