Abbreviations
- CBD2:
-
Ca2+ binding domain 2
- HEPES:
-
4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid
- KD :
-
Macroscopic dissociation constant
- ITC:
-
Isothermal titration calorimetry
- NCX3:
-
Na+/Ca2+ exchanger isoform 3
- NOE:
-
Nuclear Overhauser effect
- OD600 :
-
Optical density at 600 nm
- RDC:
-
Residual dipolar coupling
- r.m.s.:
-
Root mean square
- r.m.s.d.:
-
Root mean square deviation
- SDS-PAGE:
-
Sodium dodecyl sulfate polyacrylamide gel electrophoresis
References
Besserer GM, Ottolia M, Nicoll DA, Chaptal V, Cascio D, Philipson KD, Abramson J (2007) The second Ca2+ -binding domain of the Na+ -Ca2+ exchanger is essential for regulation: crystal structures and mutational analysis. P Natl Acad Sci USA 104:18467–18472
Boyman L, Mikhasenko H, Hiller R, Khananshvili D (2009) Kinetic and equilibrium properties of regulatory calcium sensors of NCX1 protein. J Biol Chem 284(10):6185–6193
Breukels V, Vuister GW (2010) Binding of calcium is sensed structurally and dynamically throughout the second calcium-binding domain of the sodium/calcium exchanger. Proteins 78(8):1813–1824
Breukels V, Konijnenberg A, Nabuurs SM, Touw WG, Vuister GW (2011) The second Ca(2+)-binding domain of NCX1 binds Mg(2+) with high affinity. Biochemistry 50(41):8804–8812
Cornilescu G, Marquardt J, Ottiger M, Bax A (1998) Validation of protein structure from anisotropic carbonyl chemical shifts in a dilute liquid crystalline phase. J Am Chem Soc 120(27):6836–6837
Delaglio F, Grzesiek S, Vuister GW, Zhu G, Pfeifer J, Bax A (1995) NMRPipe—a multidimensional spectral processing system based on UNIX pipes. J Biomol NMR 6:277–293
Dosset P, Hus JC, Blackledge M, Marion D (2000) Efficient analysis of macromolecular rotational diffusion from heteronuclear relaxation data. J Biomol NMR 16(1):23–28
Durkin JT, Ahrens DC, Pan YC, Reeves JP (1991) Purification and amino-terminal sequence of the bovine cardiac sodium-calcium exchanger: evidence for the presence of a signal sequence. Arch Biochem Biophys 290(2):369–375
Giladi M, Sasson Y, Fang X, Hiller R, Buki T, Wang Y-X, Hirsch JA, Khananshvili D (2012) A common Ca2+-driven interdomain module governs eukaryotic NCX regulation. PLoS One 7(6):e39985
Güntert P (2009) Automated structure determination from NMR spectra. Eur Biophys J Biophy 38(2):129–143
Hilge M, Aelen J, Vuister GW (2006) Ca2+ regulation in the Na+/Ca2+ exchanger involves two markedly different Ca2+ sensors. Mol Cell 22(1):15–25
Hilge M, Aelen J, Foarce A, Perrakis A, Vuister GW (2009) Ca2+ regulation in the Na+/Ca2+ exchanger features a dual electrostatic switch mechanism. Proc Natl Acad Sci USA 106(34):14333–14338
Lytton J (2007) Na+/Ca2+ exchangers: three mammalian gene families control Ca2+ transport. Biochem J 406(3):365–382
Nicoll DA, Quednau BD, Qui ZY, Xia YR, Lusis AJ, Philipson KD (1996) Cloning of a third mammalian Na+ -Ca2+ exchanger, NCX3. J Biol Chem 271(40):24914–24921
Nicoll DA, Sawaya MR, Kwon S, Cascio D, Philipson KD, Abramson J (2006) The crystal structure of the primary Ca2+ sensor of the Na+/Ca2+ exchanger reveals a novel Ca2+ binding motif. J Biol Chem 281(31):21577–21581
Salinas RK, Bruschweiler-Li L, Johnson E, Bruschweiler R (2011) Ca2+-binding alters the inter-domain flexibility between the two cytoplasmic calcium-binding domains in the Na+/Ca2+ exchanger. J Biol Chem 286(37):32123–32131
Shen Y, Delaglio F, Cornilescu G, Bax A (2009) TALOS+ : a hybrid method for predicting protein backbone torsion angles from NMR chemical shifts. J Biomol NMR 44(4):213–223
Vranken WF, Boucher W, Stevens TJ, Fogh RH, Pajon A, Llinas P, Ulrich EL, Markley JL, Ionides J, Laue ED (2005) The CCPN data model for NMR spectroscopy: development of a software pipeline. Proteins 59(4):687–696
Wu M, Wang M, Nix J, Hryshko LV, Zheng L (2009) Crystal Structure of CBD2 from the drosophila Na(+)/Ca(2+) exchanger: diversity of Ca(2+) regulation and its alternative splicing modification. J Mol Biol 387(1):104–112
Wu M, Tong S, Gonzalez J, Jayaraman V, Spudich JL, Zheng L (2011) Structural basis of the Ca(2+) inhibitory mechanism of drosophila Na(+)/Ca(2+) exchanger CALX and its modification by alternative splicing. Structure 19(10):1509–1517
Acknowledgments
We thank Jurgen Doreleijers for assistance with Xplor-NIH and iCing, Gjalt van Rutten for support with using the HPC Cloud infrastructure at BitBrains. This work was supported by grants from the Netherlands Organization for Scientific Research (NWO): 700.55.443 and 700.57.101.
Author information
Authors and Affiliations
Corresponding author
Electronic supplementary material
Below is the link to the electronic supplementary material.
Rights and permissions
About this article
Cite this article
Breukels, V., Touw, W.G. & Vuister, G.W. NMR structure note: solution structure of Ca2+ binding domain 2B of the third isoform of the Na+/Ca2+ exchanger. J Biomol NMR 54, 115–121 (2012). https://doi.org/10.1007/s10858-012-9654-1
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s10858-012-9654-1