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Susceptibility of gr/gr rearrangements to azoospermia or oligozoospermia is dependent on DAZ and CDY1 gene copy deletions

  • Genetics
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Abstract

Purpose

The purpose of this study was to determine the association of AZFc subdeletions (gr/gr, b1/b3 and b2/b3) and deletion of DAZ and CDY1 gene copies with male infertility

Methods

Three hundred twelve controls, 172 azoospermic and 343 oligozoospermic subjects were subjected to AZFc subdeletion typing by STS PCR. Deletion of DAZ and CDY1 gene copies was done using sequence family variant analysis. Sperm concentration and motility were compared between men with and without AZFc subdeletions. Effect of the AZFc subdeletions on ICSI outcome was evaluated.

Results

Amongst the three AZFc subdeletions, the frequency of gr/gr was higher in oligozoospermic (10.5 %) and azoospermic (11.6 %) men as compared to controls (5.1 %). In men with AZFc subdeltions, loss of two DAZ and one CDY1 gene copy made them highly susceptible to azoospermia and severe oligozoospermia with OR of 29.7 and 26, respectively. These subdeletions had no effect on ICSI outcome, albeit there were an increased number of poor quality embryos in AZFc subdeleted group.

Conclusion

AZFc subdeletions are a major risk factor for male infertility in the Indian population. In the subjects with AZFc subdeletions, the deletion of DAZ and CDY1 gene copies increases its susceptibility to azoospermia or severe oligozoospermia. Since these deletions can be vertically transmitted to the future male offspring by ICSI, it will be essential to counsel the couples for the transmission of the genetic defect in the male offspring born after assisted reproduction and the risk of perpetuating infertility in future generation.

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References

  1. Agarwal A, Mulgund A, Hamada A, Chyatte MR. A unique view on male infertility around the globe. Reprod Biol Endocrinol. 2015;13:37–46.

    Article  PubMed Central  PubMed  Google Scholar 

  2. Abid S, Maitra A, Meherji P, Patel Z, Kadam S, Shah J, et al. Clinical and laboratory evaluation of idiopathic male infertility in a secondary referral center in India. J Clin Lab Anal. 2008;22:29–38.

    Article  CAS  PubMed  Google Scholar 

  3. Massart A, Lissens W, Tournaye H, Stouffs K. Genetic causes of spermatogenic failure. Asian J Androl. 2012;14:40–8.

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  4. Sen S, Pasi AR, Dada R, Shamsi MB, Modi D. Y chromosome microdeletions in infertile men: prevalence, phenotypes and screening markers for the Indian population. J Assist Reprod Genet. 2013;30:413–22.

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  5. Krausz C, Hoefsloot L, Simoni M, Tüttelmann F, European Academy of Andrology, European Molecular Genetics Quality Network. EAA/EMQN best practice guidelines for molecular diagnosis of Y-chromosomal microdeletions: state-of-the-art 2013. Andrology. 2014;2:5–19.

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  6. Ambulkar PS, Sigh R, Reddy MVR, Varma PS, Gupta DO, Shende MR, et al. Genetic Risk of Azoospermia Factor (AZF) microdeletions in idiopathic cases of azoospermia and oligozoospermia in Central Indian population. J Clin Diagn Res. 2014;8:88–91.

    PubMed Central  PubMed  Google Scholar 

  7. Cram DS, Ma K, Bhasin S, Arias J, Pandjaitan M, Chu B, et al. Y chromosome analysis of infertile men and their sons conceived through intracytoplasmic sperm injection: vertical transmission of deletions and rarity of de novo deletions. Fertil Steril. 2000;74:909–15.

    Article  CAS  PubMed  Google Scholar 

  8. Krausz C, Degl’Innocenti S. Y chromosome and male infertility: update, 2006. Front Biosci. 2006;11:3049–61.

    Article  CAS  PubMed  Google Scholar 

  9. Kuroda-Kawaguchi T, Skaletsky H, Brown LG, Minx PJ, Cordum HS, Waterston RH, et al. The AZFc region of the Y chromosome features massive palindromes and uniform recurrent deletions in infertile men. Nat Genet. 2001;29:279–86.

    Article  CAS  PubMed  Google Scholar 

  10. Skaletsky H, Kuroda-Kawaguchi T, Minx PJ, Cordum HS, Hillier L, Brown LG, et al. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. Nature. 2003;423:825–37.

    Article  CAS  PubMed  Google Scholar 

  11. Lo Giacco D, Chianese C, Sánchez-Curbelo J, Bassas L, Ruiz P, Rajmil O, et al. Clinical relevance of Y- linked CNV screening in male infertility: new insights based on the 8-year experience of a diagnostic genetic laboratory. Eur J Hum Genet. 2014;22:754–61.

    Article  PubMed Central  PubMed  Google Scholar 

  12. Repping S, Skaletsky H, Brown L, van Daalen SK, Korver CM, Pyntikova T, et al. Polymorphism for a 1.6-Mb deletion of the human Y chromosome persists through balance between recurrent mutation and haploid selection. Nat Genet. 2003;35:247–51.

    Article  CAS  PubMed  Google Scholar 

  13. Rozen SG, Marszalek JD, Irenze K, Skaletsky H, Brown LG, Oates RD, et al. AZFc deletions and spermatogenic failure: a population-based survey of 20,000 Y chromosomes. Am J Hum Genet. 2012;91:890–6.

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  14. Stouffs K, Tournaye H, Van der Elst J, Haentjens P, Liebaers I, Lissens W. Do we need to search for gr/gr deletions in infertile men in a clinical setting? Hum Reprod. 2008;23:1193–9.

    Article  PubMed  Google Scholar 

  15. Habermann B, Mi HF, Edelmann A, Bohring C, Bäckert IT, Kiesewetter F, et al. DAZ (Deleted in AZoospermia) genes encode proteins located in human late spermatids and in sperm tails. Hum Reprod. 1998;13:363–9.

    Article  CAS  PubMed  Google Scholar 

  16. Lahn BT, Tang ZL, Zhou J, Barndt RJ, Parvinen M, Allis CD, et al. Previously uncharacterized histone acetyltransferases implicated in mammalian spermatogenesis. Proc Natl Acad Sci U S A. 2002;99:8707–12.

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  17. Kee K, Angeles VT, Flores M, Nguyen HN, Reijo Pera RA, Human DAZL. DAZ and BOULE genes modulate primordial germ-cell and haploid gamete formation. Nature. 2009;462:222–5.

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  18. Dorus S, Gilbert SL, Forster ML, Barndt RJ, Lahn BT. The CDY-related gene family: coordinated evolution in copy number, expression profile and protein sequence. Hum Mol Genet. 2003;12:1643–50.

    Article  CAS  PubMed  Google Scholar 

  19. Kim B, Lee Y, Kim Y, Lee KH, Chun S, Rhee K, et al. Polymorphic expression of DAZ proteins in the human testis. Hum Reprod. 2009;24:1507–15.

    Article  CAS  PubMed  Google Scholar 

  20. Navarro-Costa P, Gonçalves J, Plancha CE. The AZFc region of the Y chromosome: at the crossroads between genetic diversity and male infertility. Hum Reprod Update. 2010;16:525–42.

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  21. Stouffs K, Lissens W, Tournaye H, Haentjens P. What about gr/gr deletions and male infertility? Systematic review and meta-analysis. Hum Reprod Update. 2011;17:197–209.

    Article  CAS  PubMed  Google Scholar 

  22. Giachini C, Guarducci E, Longepied G, Degl’Innocenti S, Becherini L, Forti G, et al. The gr/gr deletion(s): a new genetic test in male infertility? J Med Genet. 2005;42:497–502.

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  23. Hucklenbroich K, Gromoll J, Heinrich M, Hohoff C, Nieschlag E, Simoni M. Partial deletions in the AZFc region of the Y chromosome occur in men with impaired as well as normal spermatogenesis. Hum Reprod. 2005;20:191–7.

    Article  CAS  PubMed  Google Scholar 

  24. Ghorbel M, Gargouri SB, Zribi N, Abdallah FB, Cherif M, Keskes R, et al. Partial microdeletions in the Y-chromosome AZFc region are not a significant risk factor for spermatogenic impairment in Tunisian infertile men. Genet Test Mol Biomarkers. 2012;16:775–9.

    Article  CAS  PubMed  Google Scholar 

  25. Tüttelmann F, Rajpert-De Meyts E, Nieschlag E, Simoni M. Gene polymorphisms and male infertility–a meta-analysis and literature review. Reprod Biomed Online. 2007;15:643–58.

    Article  PubMed  Google Scholar 

  26. Visser L, Westerveld GH, Korver CM, van Daalen SK, Hovingh SE, Rozen S, et al. Y chromosome gr/gr deletions are a risk factor for low semen quality. Hum Reprod. 2009;24:2667–73.

    Article  CAS  PubMed  Google Scholar 

  27. Yang Y, Ma M, Li L, Zhang W, Chen P, Ma Y, et al. Y chromosome haplogroups may confer susceptibility to partial AZFc deletions and deletion effect on spermatogenesis impairment. Hum Reprod. 2008;23:2167–72.

    Article  CAS  PubMed  Google Scholar 

  28. Stahl PJ, Mielnik A, Margreiter M, Marean MB, Schlegel PN, Paduch DA. Diagnosis of the gr/gr Y chromosome microdeletion does not help in the treatment of infertile American men. J Urol. 2011;185:233–7.

    Article  PubMed  Google Scholar 

  29. Carvalho CM, Zuccherato LW, Bastos-Rodrigues L, Santos FR, Pena SD. No association found between gr/gr deletions and infertility in Brazilian males. Mol Hum Reprod. 2006;12:269–73.

    Article  CAS  PubMed  Google Scholar 

  30. Imken L, El Houate B, Chafik A, Nahili H, Boulouiz R, Abidi O, et al. AZF microdeletions and partial deletions of AZFc region on the Y chromosome in Moroccan men. Asian J Androl. 2007;9:674–8.

    Article  PubMed  Google Scholar 

  31. de Carvalho CM, Zuccherato LW, Fujisawa M, Shirakawa T, Ribeiro-dos-Santos AK, Santos SE, et al. Study of AZFc partial deletion gr/gr in fertile and infertile Japanese males. J Hum Genet. 2006;51:794–9.

    Article  CAS  PubMed  Google Scholar 

  32. Almeamar HA, Ramachandran V, Ismail P, Nadkarni P, Fawzi N. Analysis of partial AZFc deletions in Malaysian infertile male subjects. Syst Biol Reprod Med. 2013;59:99–107.

    Article  CAS  PubMed  Google Scholar 

  33. Choi J, Song SH, Bak CW, Sung SR, Yoon TK, Lee DR, et al. Impaired spermatogenesis and gr/gr deletions related to Y chromosome haplogroups in Korean men. PLoS One. 2012;7, e43550.

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  34. Shahid M, Dhillon VS, Khalil HS, Sexana A, Husain SA. Associations of Y-chromosome subdeletion gr/gr with the prevalence of Y-chromosome haplogroups in infertile patients. Eur J Hum Genet. 2011;19:23–9.

    Article  PubMed Central  PubMed  Google Scholar 

  35. Vijesh VV, Nambiar V, Mohammed SI, Sukumaran S, Suganthi R. Screening for AZFc partial deletions in Dravidian men with nonobstructive azoospermia and oligozoospermia. Genet Test Mol Biomarkers. 2015;19:150–5.

    Article  CAS  PubMed  Google Scholar 

  36. Krausz C, Giachini C, Xue Y, O’Bryan MK, Gromoll J, Rajpert-de Meyts E, et al. Phenotypic variation within European carriers of the Y-chromosomal gr/gr deletion is independent of Y-chromosomal background. J Med Genet. 2009;46:21–31.

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  37. Noordam MJ, Westerveld GH, Hovingh SE, van Daalen SK, Korver CM, van der Veen F, et al. Gene copy number reduction in the azoospermia factor c (AZFc) region and its effect on total motile sperm count. Hum Mol Genet. 2011;20:2457–63.

    Article  CAS  PubMed  Google Scholar 

  38. Lu C, Jiang J, Zhang R, Wang Y, Xu M, Qin Y, et al. Gene copy number alterations in the azoospermia-associated AZFc region and their effect on spermatogenic impairment. Mol Hum Reprod. 2014;20:836–43.

    Article  CAS  PubMed  Google Scholar 

  39. van Golde RJ, Wetzels AM, de Graaf R, Tuerlings JH, Braat DD, Kremer JA. Decreased fertilization rate and embryo quality after ICSI in oligozoospermic men with microdeletions in the azoospermia factor c region of the Y chromosome. Hum Reprod. 2001;16:289–92.

    Article  PubMed  Google Scholar 

  40. World Health Organization. WHO laboratory manual for the examination and processing of human semen. 5th ed. Geneva: World Health Organization; 2010.

  41. Saxena R, de Vries JW, Repping S, Alagappan RK, Skaletsky H, Brown LG, et al. Four DAZ genes in two clusters found in the AZFc region of the human Y chromosome. Genomics. 2000;67:256–67.

    Article  CAS  PubMed  Google Scholar 

  42. Machev N, Saut N, Longepied G, Terriou P, Navarro A, Levy N, et al. Sequence family variant loss from the AZFc interval of the human Y chromosome, but not gene copy loss, is strongly associated with male infertility. J Med Genet. 2004;41:814–25.

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  43. Fernandes S, Huellen K, Goncalves J, Dukal H, Zeisler J. Rajpert De Meyts E et al. High frequency of DAZ1/DAZ2 gene deletions in patients with severe oligozoospermia. Mol Hum Reprod. 2002;8:286–98.

    Article  CAS  PubMed  Google Scholar 

  44. Sen S, Dixit A, Thakur C, Gokral J, Hinduja I, Zaveri K, et al. Association of progesterone receptor gene polymorphism with male infertility and clinical outcome of ICSI. J Assist Reprod Genet. 2013;30:1133–9.

    Article  PubMed Central  PubMed  Google Scholar 

  45. Bhilawadikar R, Zaveri K, Mukadam L, Naik S, Kamble K, Modi D, et al. Levels of Tektin 2 and CatSper 2 in normozoospermic and oligoasthenozoospermic men and its association with motility, fertilization rate, embryo quality and pregnancy rate. J Assist Reprod Genet. 2013;30:513–23.

    Article  PubMed Central  PubMed  Google Scholar 

  46. Zhang F, Lu C, Li Z, Xie P, Xia Y, Zhu X, et al. Partial deletions are associated with an increased risk of complete deletion in AZFc: a new insight into the role of partial AZFc deletions in male infertility. J Med Genet. 2007;44:437–44.

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  47. Vendrell JM, Arán B, Veiga A, García F, Coroleu B, Egozcue S, et al. Spermatogenic patterns and early embryo development after intracytoplasmic sperm injection in severe oligoasthenozoospermia. J Assist Reprod Genet. 2003;20:106–12.

    Article  PubMed Central  PubMed  Google Scholar 

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Acknowledgments

We are thankful to Dr. Rashmi Bhilawadikar (Hinduja Hospital) for her help in collection of data for ICSI candidates. The help extended by staff of Hinduja Hospital IVF clinic and INKUS IVF centre is gratefully acknowledged. SS and PA are thankful to Indian Council of Medical Research (ICMR) for Senior Research Fellowship. SS is also thankful to Lady Tata Memorial Trust (LTMT) for Junior Research Fellowship. The work included in this publication (RA/219/01-2015) has been supported financially by grants from the Indian Council of Medical Research (ICMR), New Delhi, India to JG, DM and AP.

Conflict of interest

The authors have no competing interests to declare.

Authors’ contribution

S Sen: Sample collection, experimental standardization and work, data analysis and manuscript preparation

P Ambulkar: Sample collection, experimental standardization and work, data analysis and manuscript preparation

I Hinduja: Study design, recruitment of ICSI candidates and manuscript preparation

K Zaveri: Study design, recruitment of ICSI candidates and manuscript preparation

J Gokral: Initial conceptualization of the study, study design, patient recruitment and manuscript preparation

A Pal: Conceptualization of the project, data collection, data analysis, manuscript preparation and overall coordination

D Modi: Conceptualization of the project, data collection, data analysis, manuscript preparation and overall coordination

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Correspondence to D. Modi.

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Capsule

AZFc subdeletions are a risk factor for male infertility in the Indian population. In men with AZFc subdeletions deletions of both DAZ and CDY1 copies increases the susceptibility to infertility. AZFc subdeletion screening would be clinically relevant for diagnosis of male infertility in Indian popualtion.

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Sen, S., Ambulkar, P., Hinduja, I. et al. Susceptibility of gr/gr rearrangements to azoospermia or oligozoospermia is dependent on DAZ and CDY1 gene copy deletions. J Assist Reprod Genet 32, 1333–1341 (2015). https://doi.org/10.1007/s10815-015-0520-4

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