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Molecular markers for promoting agro-biodiversity conservation: a case study from Italy. How cowpea landraces were saved from extinction

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Abstract

Landraces (LRs) are crop populations that are locally grown by farmers; they have a strategic role to play in rebuilding healthy and complex agro-ecosystems, but are at risk of extinction. This paper outlines how some LRs were rescued with the support of modern techniques such as molecular markers. Cowpea LRs from Umbria, Italy, were initially characterized for morphological, organoleptic and genetic traits and reintroduced among farmers. These activities led to an expansion of the area under LR based cowpea cultivation and increased farmers’ income. To encourage further LR cultivation a request for the Protected Designation of Origin (PDO) status has been promoted. Investigations were carried out to determine if it is possible to certify that the product actually belongs to the traditional agricultural and cultural context of the cultivation area. The genetic diversity and phylogenetic relationships among local LRs, other LRs, commercial varieties, and other taxa were investigated with five AFLP markers. Although genetic diversity is limited, genetic analysis showed that Umbrian cowpea LRs can be distinguished from commercial varieties, LRs from abroad and other taxa. There is a tight phylogenetic connection among Umbrian LRs. These data confirmed the available historical and sociological data and were included in the PDO specification. AFLP markers can be used to monitor the origin of seed lots that are on the market; this protects the rights of both consumers and farmers. This case study could be a resource for planning activities for the future on-farm conservation of other LRs in different countries.

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References

  • Apicius (2005) De re coquinaria. Librorum X qui dicuntur de re coquinaria. The Project Gutenberg, EBook n. 16439, available via DIALOG. http://www.gutenberg.org/files/16439/16439-h/16439-h.htm. Accessed 06 Nov 2009

  • Asfaw Z (2000) The barleys of Ethiopia. In: Brush SB (ed) Genes in the field: on-farm conservation of crop diversity. IPGRI, Rome, pp 77–107

    Google Scholar 

  • Ba FS, Pasquet R, Gepts P (2004) Genetic diversity in cowpea [Vigna unguiculata (L.) Walp.] as revealed by RAPD markers. Genet Resour Crop Evol 51:539–550. doi:10.1023/B:GRES.0000024158.83190.4e

    Article  CAS  Google Scholar 

  • Bellon MR (1996) The dynamics of crop infraspecific diversity: a conceptual framework at the farmer level. Econ Bot 50:26–39

    Google Scholar 

  • Boyce RL, Ellison PC (2001) Choosing the best similarity index when performing fuzzy set ordination on binary data. J Veg Sci 12:711–720. doi:10.2307/3236912

    Article  Google Scholar 

  • Brush SB (1992) Ethnoecology, biodiversity and modernization in Andean potato agriculture. J Ethnobiol 12:161–185

    Google Scholar 

  • Brush SB (1995) In situ conservation of landraces in centers of crop diversity. Crop Sci 35:346–354

    Google Scholar 

  • Brush SB (2000) The issues of in situ conservation of crop genetic resources. In: Brush SB (ed) Genes in the field: on-farm- conservation of crop diversity. IPGRI, Rome, pp 3–26

    Google Scholar 

  • Burkhill IH (1953) Habits of man and the origins of the cultivated plants of the Old World. J Proc Linn Soc Lond (Bot) 164:12–42

    Google Scholar 

  • Camacho Villa TC, Maxted N, Scholten MA, Ford-Lloyd BV (2005) Defining and identifying crop landraces. Plant Genet Res 3:373–384. doi:10.1079/PGR200591

    Article  Google Scholar 

  • CBD (1992) Convention on biological diversity: text and annexes. Secretariat of the Convention on Biological Diversity, Montreal

    Google Scholar 

  • CBD (2002) Global strategy for plant conservation. Secretariat of the convention on biological diversity, Montreal. Available via DIALOG. http://www.biodiv.org/decisions/?lg=0&dec=VI/9. Accessed 23 Oct 2009

  • Chevalier A (1944) La dolique de Chine en Afrique. Rev Bot Appl Agr Trop 24:128–152

    Google Scholar 

  • Coulibaly S, Pasquet RS, Papa R, Gepts P (2002) AFLP analysis of the phenetic organization and genetic diversity of Vigna unguiculata L. (Walp.) reveals extensive gene flow between wild and domesticated types. Theor Appl Genet 104:358–366. doi:10.1007/s001220100740

    Article  CAS  PubMed  Google Scholar 

  • Council Regulation (EC) No 510/2006 of 20 March 2006 on the protection of geographical indications and designations of origin for agricultural products and foodstuffs. Available via DIALOG. http://eur-lex.europa.eu/LexUriServ/LexUriServ.do?uri=CELEX:32006R0510:EN:NOT. Accessed 14 Febr 2009

  • Diouf D, Hilu KW (2005) Microsatellites and RAPD markers to study genetic relationships among cowpea breeding lines and local varieties in Senegal. Genet Resour Crop Evol 52:1057–1067. doi:10.1007/s10722-004-6107-z

    Article  CAS  Google Scholar 

  • Doyle JJ, Doyle JL (1990) Isolation of plant DNA from fresh tissue. Focus 12:13–24

    Google Scholar 

  • Esquinas-Alcazar JT (1993) Plant genetic resources. In: Hayward MD, Bosemark NO, Romagosa I (eds) Plant breeding: principles and prospects. Chapman & Hall, London, pp 33–51

    Google Scholar 

  • FAO (Food and Agriculture Organization) (2001) International treaty on plant genetic resources for food and agriculture. Available via DIALOG. http://www.planttreaty.org/texts_en.htm. Accessed 6 Nov 2009

  • Feleke Y, Pasquet R, Gepts P (2006) Development of PCR-based chloroplast DNA markers that characterize domesticated cowpea (Vigna unguiculata ssp. unguiculata var. unguiculata) and highlight its crop-weed complex. Plant Syst Evol 262:75–87. doi:10.1007/s00606-006-0475-0

    Article  CAS  Google Scholar 

  • Felsenstein J (2005) PHYLIP (phylogeny inference package) version 3.6. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA

    Google Scholar 

  • Gepts P (2006) Plant genetic resources conservation and utilization: the accomplishments and future of a societal insurance policy. Crop Sci 46:2278–2292

    Article  Google Scholar 

  • Giunta per l’Inchiesta Agraria (1885) Atti della Giunta per l’inchiesta agraria e sulle condizioni della classe agricola (Province di Perugia, Ascoli Piceno, Ancona, Macerata e Pesaro). Forzoni e C, Rome

    Google Scholar 

  • Grati-Kamoun N, Mahmoud FL, Rebaï A, Gargouri A, Panaud O, Saar A (2006) Genetic diversity of tunisian olive tree (Olea europaea L.) cultivars assessed by AFLP markers. Genet Res Crop Evol 53:265–275. doi:10.1007/s10722-004-6130-0

    Article  CAS  Google Scholar 

  • Hammer K, Knüpffer H, Laghetti G, Perrino P (1999) Seeds from the past. A catalogue of crop germplasm in central and north Italy. Germplasm Institute of CNR, Bari

    Google Scholar 

  • Hammer K, Gladis TH, Diederichsen (2003) An in situ and on-farm management of plant genetic resources. Europ J Agron 19:509–517

    Article  Google Scholar 

  • Harlan JR (1992) Crops and man. American Society of Agronomy, Inc, Madison

    Google Scholar 

  • Hirano R, Kikuchi A, Kawase M (2008) Evaluation of genetic diversity of bread wheat landraces from Pakistan by AFLP and implication for a future collection strategy. Genet Resour Crop Evol 55:1007–1101. doi:10.1007/s10722-008-9308-z

    Article  Google Scholar 

  • IPGRI (1993) Diversity for development. International Plant Genetic Resources Institute, Rome

    Google Scholar 

  • Jaccard P (1912) The distribution of flora in the alpine zone. New Phytol 11:37–50

    Article  Google Scholar 

  • Jarvis DJ, Brown AHD, Cuong PH, Collado-Panduro L, Latournerie-Moreno L, Gyawali S, Tanto T, Sawadogo M, Mar I, Sadiki M, Thi-Ngoc Hue N, Arias-Reyes L, Balma D, Bajracharya J, Castillo F, Rijal D, Belqadi L, Rana R, Saidi S, Ouedraogo J, Zangre R, Rhrib K, Chavez JL, Schoen D, Sthapit B, De Santis P, Fadda C, Hodgkin T (2008) A global perspective of the richness and evenness of traditional crop-variety diversity maintained by farming communities. Proc Natl Acad Sci 105:5326–5331

    Article  CAS  PubMed  Google Scholar 

  • Laborda PR, Oliveira KM, Garcia AAF, Paterniani MEAGZ, de Souza AP (2005) Tropical maize germplasm: what can we say about its genetic diversity in the light of molecular markers? Theor Appl Genet 111:1288–1299. doi:10.1007/s00122-005-0055-7

    Article  CAS  PubMed  Google Scholar 

  • Lanteri S, Saba E, Cadinu M, Mallica GM, Baghino L, Portis E (2004) Amplified fragments length polymorphism for genetic diversity assessment in artichoke. Theor Appl Genet 108:1534–1544. doi:10.1007/s00122-003-1576-6

    Article  CAS  PubMed  Google Scholar 

  • Maass BL, Jamnadass RH, Hanson J, Pengelly B (2005) Determining sources of diversity in cultivated and wild Lablab purpureus related to provenance of germplasm by using amplified fragment length polymorphism. Genet Resour Crop Evol 52:683–695. doi:10.1007/s10722-003-6019-3

    Article  Google Scholar 

  • Maréchal R, Mascherpa JM, Stainier F (1978) Etude taxonomique d’un group complex d’espèces des genres Phaseolus et Vigna (Papilionaceae) sur la base de données morphologiques e polliniques, traitées par l’analyse informatique. Boissiera 28:1–273

    Google Scholar 

  • Marghali S, Panaud O, Lamy F, Ghariani S, Sarr A, Marrakchi M, Trifi-Farah N (2005) Exploration of intra- and inter- population genetic diversity in Hedysarum coronarium L. by AFLP markers. Genet Resour Crop Evol 52:277–284. doi:10.1007/s10722-005-5459-3

    Article  CAS  Google Scholar 

  • Maxted N, Hawkes JG, Ford-Lloyd BV, Williams JT (1997) A practical model for in situ genetic conservation. In: Maxted N, Ford-Lloyd BV, Hawkes JG (eds) Plant genetic conservation: the in situ approach. Chapman & Hall, London, pp 339–367

    Google Scholar 

  • Maxted N, Guarino L, Myer L, Chiwona EA (2002) Towards a methodology for on-farm conservation of plant genetic resources. Genet Resour Crop Evol 49:31–46

    Article  Google Scholar 

  • Medini M, Hamza S, Rebai A, Baum M (2005) Analysis of genetic diversity in Tunisian durum wheat cultivars and related wild species by SSR and AFLP markers. Genet Resour Crop Evol 52:21–31. doi:10.1007/s10722-005-0225-0

    Article  CAS  Google Scholar 

  • Meudt H, Clarke AC (2007) Almost forgotten or latest practice? AFLP application, analyses and advances. Trends Plant Sci 12:106–117. doi:10.1016/j.tplants.2007.02.001

    Article  CAS  PubMed  Google Scholar 

  • Mohammadi SA, Prasanna BM (2003) Analysis of genetic diversity in crop plants—salient statistical tools and considerations. Crop Sci 43:1235–1248

    Google Scholar 

  • Murphree MW (2009) The strategic pillars of communal natural resource management: benefit, empowerment and conservation. Biodivers Conserv 18:2551–2562. doi:10.1007/s10531-009-9644-0

    Article  Google Scholar 

  • Negri V (2003) Landraces in central Italy: where and why they are conserved and perspectives for their on farm conservation. Genet Resour Crop Evol 50:871–885. doi:10.1023/A:1025933613279

    Article  Google Scholar 

  • Negri V (2005) Agro-biodiversity conservation in Europe: ethical issues. J Agric Environ Ethics 18:3–25. doi:10.1007/s10806-004-3084-3

    Article  Google Scholar 

  • Negri V, Polegri L (2009) Genetic diversity in home gardens in Umbria: a cowpea case study. In: Bailey A, Eyzaguirre P, Maggioni L (eds) Crop genetic resources in European home gardens. Proc. Of the ECP/GR_Bioversity International related Workshop, Ljubliana, (Sl) October 3–4, 2007. Bioversity International, Rome, I, pp 55–61. ISBN 978-92-9043-810-6

  • Negri V, Tosti N (1997) Collecting cowpea (Vigna unguiculata L. Walp.) germplasm in the Trasimeno area (Umbria, Italy). Plant Genet Resour Newsl 112:107–109

    Google Scholar 

  • Negri V, Tosti N, Falcinelli M, Veronesi F (2000) Characterization of thirteen cowpea landraces from Umbria (Italy). Genet Res Crop Evol 47:141–144

    Article  Google Scholar 

  • Negri V, Floridi S, Montanari L (2001) Organoleptic and chemical evaluation of Italian cowpea landraces from a restricted area. Italian J Food Sci 13:383–390

    CAS  Google Scholar 

  • Negri V, Branca F, Castellini G (2007) Integrating wild plants and landrace conservation in farming systems: a perspective from Italy. In: Maxted N, Ford-Lloyd BV, Kell SP, Iriondo JM, Dulloo ME and Turok J (eds) Crop wild relatives. First international conference on crop wild relatives conservation and use, Agrigento, Sicily, Italy, 14–17 September 2005. CABI, Wallingford, pp 392–402

  • Nei M (1973) Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci 70:3321–3323

    Article  CAS  PubMed  Google Scholar 

  • Nei M, Li WH (1979) Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci 76:5269–5273

    Article  CAS  PubMed  Google Scholar 

  • Ng NQ (1995) Cowpea Vigna unguiculata (Leguminosae-Papilionoideae). In: Smartt J, Simmonds NW (eds) Evolution of crop plants. Longman Scientific and Technical England, London, pp 326–332

    Google Scholar 

  • Ozkan H, Brandolini A, Pozzi C, Effgen S, Wunder J, Salamini F (2005) A reconsideration of the domestication geography of tetraploid wheats. Theor Appl Genet 110:1052–1060. doi:10.1007/s00122-005-1925-8

    Article  CAS  PubMed  Google Scholar 

  • Padi FK (2003) Genetic analyses of pigmentation in cowpea. Pak J Biol Sci 19:1655–1659

    Google Scholar 

  • Papa C (1996) The “farre de Montelione”: landrace and representation. In: Paludosi S, Hammer K, Heller J (eds) Hulled wheats. Promoting the conservation and use of underutilized and neglected crops. Proceedings of the first international workshop on hulled wheats 21–22 July 1995, Castelvecchio Pascoli. IPGRI, Rome, pp 154–171

  • Papa C (1999) Il farro a Monteleone di Spoleto: pratiche agrarie, consuetudini giuridiche e ritualità. In: Papa C (ed) Il Farro. Saperi, usi e conservazione delle varietà locali. Quaderni del CEDRAV 1. CEDRAV, Cerreto di Spoleto, Italy, pp 9–26

    Google Scholar 

  • Pasquet RS (1999) Genetic relationships among subspecies of Vigna unguiculata (L.) Walp. based on allozyme variation. Theor Appl Genet 98:1104–1119

    Article  CAS  Google Scholar 

  • Pasquet RS (2000) Allozyme diversity of cultivated cowpea Vigna unguiculata (L.) Walp. Theor Appl Genet 101:211–219. doi:10.1007/s001220051471

    Article  CAS  Google Scholar 

  • Perrino P, Laghetti G, Spagnoletti Zeuli PL, Monti LM (1993) Diversification of cowpea in the Mediterranean and other centres of cultivation. Genet Resour Crop Evol 40:121–132

    Article  Google Scholar 

  • Piergiovanni AR, Laghetti G (1999) The common bean landraces from Basilicata (Southern Italy): an example of integrated approach applied to genetic resources management. Genet Resour Crop Evol 46:47–52

    Article  Google Scholar 

  • Plinius GS (1984) Historia Naturalis. III, 18 (Trans: Aragosti A, Centi R, Ela Consolino F, Cotrozzi AM, Lechi F, Perutelli A). Giulio Einaudi, Torino

  • Purseglove JW (1976) The origins and migrations of crops in tropical Africa. In: Harlan JR, de Wet JM, Stemler ABL (eds) Origins of African plant domestication. The Hague, Mouton, pp 291–310

    Google Scholar 

  • Rohlf FJ (1993) NTSYS.PC. Numerical taxonomy and multivariate analysis system, version 2.11Q. Applied Biostatistics Inc, New York, USA

    Google Scholar 

  • Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425

    CAS  PubMed  Google Scholar 

  • Singh BB, Chambliss OL, Sharma B (1997) Recent advances in cowpea breeding. In: Singh BB, Mohan Raj DR, Dashiell KE, Jackai LEN (eds) Advances in cowpea research. IITA-JIRCAS, Ibadan, pp 30–49

    Google Scholar 

  • Spooner DM, McLean K, Ramsay G, Waugh R, Bryan GJ (2005) A single domestication for potato based on multilocus amplified fragment lenght polymorphism genotyping. Proc Natl Acad Sci 102:14694–14699. doi:10.1073/pnas.0507400102

    Article  CAS  PubMed  Google Scholar 

  • Tosti N (1999) La salvaguardia e la valorizzazione delle antiche varietà per lo sviluppo di economie di nicchia: analisi morfoagronomica e molecolare entro popolazioni locali di Vigna unguiculata (L.) Walp. Dottorato di Ricerca Thesis, Perugia University, Italy

  • Tosti N, Negri V (2002) Efficiency of three PCR-based markers in assessing genetic variation among cowpea landraces. Genome 45:268–275. doi:10.1139/g01-146

    Article  CAS  PubMed  Google Scholar 

  • Tosti N, Negri V (2005) On-going on-farm microevolutionay processes in neighbouring cowpea landraces revealed by molecular markers. Theor Appl Genet 110:1275–1283. doi:10.1007/s00122-005-1964-1

    Article  CAS  PubMed  Google Scholar 

  • Ude GN, Kenwothy WJ, Costa JM, Cregan PB, Alvernaz J (2003) Genetic diversity of soybean cultivars from China, Japan, North America, and North American ancestral lines determined by amplified fragment length polymorphism. Crop Sci 43:1858–1867

    Article  CAS  Google Scholar 

  • Vetelainen M, Negri V, Maxted N (eds) (2009) European landraces: on-farm conservation, management and use. Bioversity Technical Bulletin No. 15, Bioversity International, Rome

    Google Scholar 

  • Vos P, Hogers R, Bleeker M, Rejans M, van de Lee T, Hornes M, Frijters J, Pot J, Peleman J, Kupier M, Zabeau M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23:4407–4414

    Article  CAS  PubMed  Google Scholar 

  • Wood D, Lenné JM (1997) The conservation of agrobiodiversity on-farm: questioning the emerging paradigm. Biodivers Conserv 6:109–129

    Article  Google Scholar 

  • Yeh FC, Yang RC, Boyle TJB, Ye ZH, Mao JX (1999) POPGENE, the user-friendly shareware for population genetic analysis. Edmonton, Molecular Biology and Biotechnology Centre, University of Alberta, Canada

    Google Scholar 

  • Zeid M, Schön C, Link W (2003) Genetic diversity in recent elite faba bean lines using AFLP markers. Theor Appl Genet 107:1304–1314. doi:10.1007/s00122-003-1350-9

    Article  CAS  PubMed  Google Scholar 

  • Zeven AC (1998) Landraces: a review of definitions and classifications. Euphytica 104:127–139

    Article  Google Scholar 

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Acknowledgments

The Regione dell’Umbria, Ente Parco del Trasimeno and Parco Tecnologico Agroalimentare funded this work. The International Institute for Tropical Agriculture (IITA) kindly donated some of the extra European accessions examined in this study. Thanks are due to Dr. Paola Taviani for technical assistance in the first phase of the work.

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Polegri, L., Negri, V. Molecular markers for promoting agro-biodiversity conservation: a case study from Italy. How cowpea landraces were saved from extinction. Genet Resour Crop Evol 57, 867–880 (2010). https://doi.org/10.1007/s10722-009-9526-z

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