Alternative splicing, gene duplication and connectivity in the genetic interaction network of the nematode worm Caenorhabditis elegans
- 111 Downloads
We examined the relationship between gene duplication, alternative splicing, and connectedness in a predicted genetic interaction network using published data from the nematode worm Caenorhabditis elegans. Similar to previous results from mammals, genes belonging to families with only one member (“singletons”) were significantly more likely to lack alternative splicing than were members of large multi-gene families. Genes belonging to multi-gene families lacking alternative splicing tended to have higher connectedness in the genetic interaction network than did genes in families that included one or more alternatively spliced members. Moreover, alternatively spliced genes were significantly more likely to interact with other alternatively spliced genes. These results support the hypothesis that certain key proteins with high degrees of network connectedness are subject to selection opposing the occurrence of alternatively spliced forms.
KeywordsAlternative splicing Caenorhabditis elegans Genetic interaction network
This research was supported by grant GM43940 from the National Institutes of Health.
- Batagelj V, Mrvar A (2006) Pajek: program for analysis and visualization of large networks. LjubljanaGoogle Scholar
- Byrne AB, Weinrauch MT, Wong V, Koeva M, Dixon SJ, Stuart JM, Roy PJ (2007) A global analysis of genetic interactions in Caenorhabditis elegans. J Biol 6:8Google Scholar
- Hollander M, Wolfe DA (1973) Nonparametric statistical methods. Wiley, New YorkGoogle Scholar