Abstract
We aimed to investigate the differentially expressed long non-coding RNAs (lncRNAs) during the differentiation of human umbilical cord derived mesenchymal stem cells (hUCMSCs) into cardiomyocyte-like cells induced by 5-aza. hUCMSCs were isolated and purified from umbilical cords. After treated with 10 μmol/L 5-Aza for 24 h, hUCMSCs wereas continued to be cultured for 14 days. Comparison of cardiac specific genes and the expression profile of lncRNAs on hUCMSCs between day 14 and day 0 was performed using immunofluorescence staining, immunohistochemistry, Western blot assay, RT-PCR and lncRNA microarray. Results show that well-organized sarcomeric structure and more cTnI and MLC2a staining were seen in hUCMSCs of day 14 after 5-aza-induced compared to those in day 0. Expression of Desmin, Nkx2.5, cTnI and MLC2a of hUCMSCs was much higher on day 14 compared with day 0 (P < 0.01). 41 differentially expressed lncRNAs were found on day 14 hUCMSCs compared those of day 0 were identified. Among them, 25 upregulated and 16 downregulated. Four out of the five upregulated lncRNAs (P = 0.00035, 0.014, 0.016 and 0.005 for uc010vei.1, X72487, BC064139, AK092074) and four out of the five downregulated lncRNAs (P = 0.038, 0.0014, 0.00026 and 0.004 for X85157, uc007keu.1, AK309872, NR_029399) showed significantly different expressions in further validation using RT-PCR. Our results illustrated that there was a dysregulation of the lncRNA profile during the differentiation of hUCMSCs into cardiomyocyte-like cells, which will provide the foundation for further study of the biological functions and mechanism of lncRNAs in the differentiation of hUCMSCs into cardiomyocyte-like cells.
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References
Asadi F, Razmi A, Dehpour AR, Shafiei M (2016) Tropisetron inhibits high glucose-induced calcineurin/NFAT hypertrophic pathway in H9c2 myocardial cells. J Pharm Pharmacol 68:485–493
Bär C, Chatterje SE, Thum T (2016) Long noncoding RNAs in cardiovascular pathology, diagnosis, and therapy. Circulation 134:1484–1499
Cabili MN, Trapnel C, Goff L, Koziol M, Tazon-Vega B, Regev A, Rinn JL (2011) Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev 25:1915–1927
Congrains A, Kamide K, Oguro R, Yasuda O, Miyata K, Yamamoto E, Kawai T, Kusunoki H, Yamamoto H, Takeya Y, Yamamoto K, Onishi M, Sugimoto K, Katsuya T, Awata N, Ikebe K, Gondo Y, Oike Y, Ohishi M, Rakugi H (2012) Genetic variants at the 9p21 locus contribute to atherosclerosis through modulation of ANRIL and CDKN2A/B. Atherosclerosis 220:449–455
ENCODE Project Consortium (2012) An integrated encyclopedia of DNA elements in the human genome. Nature 7414:57–74
Faiella W, Atoui R (2016) Therapeutic use of stem cells for cardiovascular disease. Clin Transl Med 5:34
Hinterseher I, Tromp G, Hn Kuivaniemi (2011) Genes and abdominal aortic aneurysm. Ann Vasc Surg 25:388–412
Hlaing SM, Garcia LA, Contreras JR, Norris KC, Ferrini MG, Artaza JN (2014) 1,25-Vitamin D3 promotes cardiac differentiation through modulation of the WNT signaling pathway. J Mol Endocrinol 53:303–317
Klattenhoff CA, Scheuermann JC, Surface LE, Bradley RK, Fields PA, Steinhauser ML, Ding H, Butty VL, Torrey L, Haas S, Abo R, Tabebordbar M, Lee RT, Burge CB, Boyer LA (2013) Braveheart, a long noncoding RNA required for cardiovascular lineage commitment. Cell 152:570–583
Kutter C, Watt S, Stefflova K, Wilson MD, Goncalves A, Ponting CP, Odom DT, Marques AC (2012) Rapid turnover of long noncoding RNAs and the evolution of gene expression. PLoS Genet 8:e1002841
Lee JW, Lee SH, Youn YJ, Ahn MS, Kim JY, Yoo BS (2014) A randomized, open-label, multicenter trial for the safety and efficacy of adult mesenchymal stem cells after acute myocardial infarction. J Korean Med Sci 29:23–31
Madonna R, Petrov L, Teberino MA, Manzoli L, Karam JP, Renna FV (2015) Transplantation of adipose tissue mesenchymal cells conjugated with VEGF-releasing microcarriers promotes repair in murine myocardial infarction. Cardiovasc Res 108:39–49
Méndez-Ferrer S, Michurina TV, Ferraro F, Mazloom AR, Macarthur BD, Lira SA, Scadden DT, Ma’ayan A, Enikolopov GN, Frenette PS (2010) Mesenchymal and haematopoietic stem cells form a unique bone marrow niche. Nature 466:829–834
Orom UA, Derrien T, Beringer M, Gumireddy K, Gardini A, Bussott GI, Lai F, Zytnicki M, Notredame C, Huang Q, Guigo R, Shiekhattar R (2010) Long noncoding RNAs with enhancer-like function in human cells. Cell 143:46–58
Perry RB, Ulitsky I (2016) The functions of long noncoding RNAs in development and stem cells. Development 143:3882–3894
Rahbarghazi R, Nassiri SM, Ahmadi SH, Mohammadi E, Rabbani S, Araghi A, Hosseinkhani H (2014) Dynamic induction of pro-angiogenic milieu after transplantation of marrow-derived mesenchymal stem cells in experimental myocardial infarction. Int J Cardiol 173:453–466
Ruan ZB, Zhu L, Yin YG, Chen GC (2016) Overexpressing NKx2.5 increases the differentiation of human umbilical cord drived mesenchymal stem cells into cardiomyocyte-like cells. Biomed Pharmacother 78:110–115
Schmittgen TD, Livak K (2008) Analyzing real-time PCR data by the comparative CT method. Nat Protoc 3:1101–1108
Thum T (2015) Facts and updates about cardiovascular non-coding RNAs in heart failure. ESC Heart Fail 2:108–111
Wang KC, Chang HY (2011) Molecular mechanisms of long noncoding RNAs. Mol Cell 43:904–914
Yoshimoto N, Ikeda Y, Tatematsu K, Iijima M, Nakai T, Okajima T, Tanizawa K, Kuroda S (2016) Cytokine-dependent activation of JAK-STAT pathway in Saccharomyces cerevisiae. Biotechnol Bioeng 113:1796–1804
Zhu L, Ruan Z, Yin Y, Chen G (2015) Expression and significance of DLL4–Notch signaling pathway in the differentiation of human umbilical cord derived mesenchymal stem cells into cardiomyocytes induced by 5-azacytidine. Cell Biochem Biophys 71:249–253
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We are thankful Hai-hui Sheng for technical assistance and Wen-qi Li for the assistance of statistical analysis.
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ZBR carried out the design and coordinated the study, participated all the experiments and prepared the manuscript. LZ provided assistance in the design of the study, coordinated and carried out most of the experiments and participated in manuscript preparation. GCC and YR provided assistance for all experiments. All authors have read and approved the content of the manuscript.
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This study is approved by institutional ethics committee of Jiangsu Taizhou People’s Hospital and written informed consent was obtained from all patients.
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Ruan, Zb., Chen, Gc., Ren, Y. et al. Expression profile of long non-coding RNAs during the differentiation of human umbilical cord derived mesenchymal stem cells into cardiomyocyte-like cells. Cytotechnology 70, 1247–1260 (2018). https://doi.org/10.1007/s10616-018-0217-5
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DOI: https://doi.org/10.1007/s10616-018-0217-5