Skip to main content

Advertisement

Log in

Phylogeographical structure and conservation genetics of wild grapevine

  • Published:
Conservation Genetics Aims and scope Submit manuscript

Abstract

The distribution of Vitis vinifera subsp. silvestris, the wild grapevine subspecies of Vitis vinifera L., has been dramatically reduced in its major sites of diffusion, at first by the spread, over the last 150 years, of pathogens from North America and, more recently, with fragmentation of habitat and disbranching by humans. In this work, 418 wild grapevine samples, belonging to 78 populations, were collected in their main Mediterranean distribution areas, including the Caucasus area, and the extent of their genetic variability evaluated by analysing plastid microsatellite DNA polymorphism. Results show low haplotype diversity value, with five haplotypes detected within the analysed populations. The highest within-population haplotypic diversity, with the presence of all five detected haplotypes, was found in the Caucasus regions and in the central regions of Italy. The distribution of all detected haplotypes suggests the Caucasian region as the possible center of origin of Vitis vinifera subsp. silvestris. A principal plastid lineage was found to be fixed in several locations, in the Northernmost European countries and in the Southern island of Sardinia. These results draw attention to two different refugium sites in the Mediterranean basin and suggest that conservation priority should be given to grapevine populations still preserved in hotspots of these regions.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Similar content being viewed by others

References

  • Anzani R, Failla O, Scienza A, Campostrini F (1990) Wild grapevine (Vitis vinifera var. silvestris) in Italy: distribution, characteristics and germplasm preservation – report. Vitis, 97–112. Special issue

  • Arnold C, Gilett F, Gobat JM (1998) Situation de la vigne sauvage Vitis vinifera L sp. Sylvestris (Gmelin) Hegi en Europe. Vitis 37(4):159–170

    Google Scholar 

  • Arnold C, Schnitzler A, Douard A (2002) Conservation and reintroduction of rare forest species: an example from wild grapevine (Vitis vinifera ssp. silvestris Gmelin, Hegi) in Alsace. Oral communication, Internation Symposium on Dynamics and Conservation of Genetic Diversity in Forest Ecoystems, Strasbourg, 2–5 December 2002.

  • Dumolin-Lapègue S, Demesure B, Petit RJ (1995) Inheritance of chloroplast and mitochondrial genomes in pedunculate oak investigated with an efficient PCR-based method. Theor. App. Genet. 91:1253–1256

    Google Scholar 

  • Dumolin-Lapègue S, Demesure B, Fineschi S, Le Come V, Petit RJ (1997a) Phylogeographic structure of white oaks throughout the european continent. Genetics 146:1475–1487

    PubMed  Google Scholar 

  • El Mousadik A, Petit RJ (1996) Chloroplast DNA phylogeography of the argan tree of Morocco. Mol. Ecol. 5: 547–555

    Article  PubMed  CAS  Google Scholar 

  • Ennos RA (1994) Estimating the relative rates of pollen and seed migration among plant populations. Heredity 80:584–593

    Google Scholar 

  • Fineschi S, Taurchini D, Villani F, Vendramin GG (2000) Chloroplast DNA polymorphism revelas little geographical structure in Castanea sativa Mill. (Fagaceae) throughout southern European countries. Mol. Ecol. 9:1495–1503

    Article  PubMed  CAS  Google Scholar 

  • Grassi F, Imazio S, Ocete R, Lopez MA, Failla O, Scienza A, Sala F, Labra M (2003a) Genetic isolation and diffusion of wild grapevine Italian and Spanish populations as estimated by nuclear and chloroplast SSR analysis. Plant Biol. 5:608–614

    Article  CAS  Google Scholar 

  • Grassi F, Labra M, Imazio S, Spada A, Sgorbati S, Scienza A, Sala F (2003b) Evidence of secondary grapevine domestication centre detected by SSR analysis. Theor. Appl. Genet. 107:1315–1320

    Article  CAS  Google Scholar 

  • Hegi G (1925) Illustrierte Flora von Mitteleuropa. Karl Hans Verlag, München

    Google Scholar 

  • Hewitt GM (2001) Speciation, hybrid zones and phylogeography or seeing genes in space and time. Mol. Ecol. 10: 537–549

    Article  PubMed  CAS  Google Scholar 

  • Holub J, Procházka F (2000) Red list of vascular plants of the Czech Republic. Preslia 72: 187–230

    Google Scholar 

  • Ishii T, Mori N, Ogihara Y (2001) Evaluation of allelic diversity at chloroplast microsatellite loci among common wheat and its ancestral species. Theor. Appl. Genet. 103: 896–904

    Article  CAS  Google Scholar 

  • King RA, Ferris C (1998) Chloroplast DNA phylogeography of Alnus glutinosa (L.) Gaertn. Mol. Ecol. 7: 1151–1161

    Article  CAS  Google Scholar 

  • Kozjak P, Korosec-Koruza Z, Javornik B (2003) Characterisation of cv. Refosk (Vitis vinifera L.) by SSR markers. Vitis. 42: 83–86

    Google Scholar 

  • Labra M, Moriondo G, Schnaeider A, Grassi F, Failla O, Scienza O, Sala F (2002a) Biodiversity of grapevines (Vitis vinifera L.) grown in the Aosta Valley. Vitis 41(2): 89–92

    Google Scholar 

  • Labra M, Failla O, Forni G, Ghiani A, Scienza A, Sala F (2002b) Microsatellite analysis to define genetic diversity of grapevines (Vitis vinifera L.) grown in Central and Western Mediterranean countries. Journal International des Sciences de la Vigne et du Vin 36: 11–20

    CAS  Google Scholar 

  • Labra M, Carreno-Sanchez E, Bardini M, Basso B, Sala F, Scienza A (2001) Extraction and purification of DNA from grapevine leaves. Vitis 40: 101–102

    CAS  Google Scholar 

  • Lacombe T (2002) Contribution a‘ la caracte’risation et a‘ la protection in situ des populations de Vitis vinifera L. spp silvestris (Gmelin) Hegi, en France. Oral communication, BRG National Symposium, La Châtre-Berry

  • Marchelli P, Gallo L, Scholz F, Ziegenhagen B (1998) Chloroplast DNA markers reveal a geographical divide across Argentinean southern beech Nothofagus nervosa (Phil.) Dim. et Mil. Distribution area. Theorl. Appl. Genet. 97: 642–646

    Article  CAS  Google Scholar 

  • Negrul AM (1938) Evolution of cultivated forms of grapes. CR Acad. USSR N.S. 18: 585–588

    Google Scholar 

  • Ocete R, López MA, Pérez MA, Del Tío R, Lara M (1999) Las poblaciones espanolas de vid silvestre: Característics de un recurso fitogenetico a conservar. Monografías INIA, Agrícola, Madrid, pp. 1–52

    Google Scholar 

  • Petit RJ, Csaikl UM, Bordács S et al. (2002) Chloroplast DNA variation in European white oaks: Phylogeography and patterns of diversity based on data from over 2600 populations. For. Eco.l Manag. 156: 5–26

    Article  Google Scholar 

  • Petit RJ, Duminil J, Fineschi S, Hampe A, Salvini D, vendramin GG (2005) Comparative organization of chloroplast, mitochondrial and nuclear diversity in plant populations. Mol. Ecol. 14(3): 689–701

    Article  PubMed  CAS  Google Scholar 

  • Pons O, Petit RJ (1996) Measuring and testing genetic differentiation with ordered versus unordered alleles. Genetics 144: 1237–1245

    PubMed  CAS  Google Scholar 

  • Provan J, Powell W, Dewar H, Bryan G, Machray GC, Waugh R (1999) An extreme cytoplasmic bottleneck in the modern European cultivated potato (Solanum tuberosum) is not reflected in decreased levels of nuclear diversity. Proc. R Soc. Lond. B. 266:633–639

    Article  Google Scholar 

  • Rossetto M, McNally J, Henry RJ (2002) Evaluating the potential of SSR flanking regions for examining taxonomic relationships in the Vitaceae. Theor. Appl. Genet. 104: 61–66

    Article  PubMed  CAS  Google Scholar 

  • This P, Jung A, Boccacci P, Borrego J, Botta R, Costantini L, Crespan M, Dangl GS, Eisenheld C, Ferreira-Monteiro F, Grando S, Ibanez J, Lacombe T, Laucou V, Magalhaes R, Meredith CP, Milani N, Peterlunger E, Regner F, Zulini L, Maul E (2004) Development of a standard set of microsatellite reference alleles for identification of grape cultivars. Theor. Appl. Genet. 109: 1448–1458

    Article  PubMed  CAS  Google Scholar 

  • Weising K, Gardner R, (1999) A set of conserved PCR primers for the analysis of simple sequence repeat polymorphisms in chloroplast genomes of dicotyledonous angiosperms. Genome 42: 9–19

    Article  PubMed  CAS  Google Scholar 

Download references

Acknowledgements

This research was supported by the Italian Ministry of Environment and Environmental Protection, within the research project “Research and development in biotechnology applied to the protection of the environment, in collaboration with the Popular Republic of China” (years 2005–2007) and by the FIRB-RNBE01SF project, MIUR, Italy. We wish to thank W. Tiefenbrunner, F.␣Regner, P. Madera, F. Selvi., M.A. Lopez, G.␣Lovicu, for their valuable help in collecting wild grapewine and Roberto Brontini for technical assistance in the molecular analysis.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to F. Grassi.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Grassi, F., Labra, M., Imazio, S. et al. Phylogeographical structure and conservation genetics of wild grapevine. Conserv Genet 7, 837–845 (2006). https://doi.org/10.1007/s10592-006-9118-9

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10592-006-9118-9

Key words

Navigation