Skip to main content
Log in

Distinct association of an alphasatellite and a betasatellite with Tomato leaf curl New Delhi virus in field-infected cucurbit

  • Disease Note
  • Published:
Journal of General Plant Pathology Aims and scope Submit manuscript

Abstract

Leaf samples of Cucurbita pepo with yellow mosaic disease symptoms were collected in 2012. Rolling circle amplification and PCR amplification with begomovirus-specific primers confirmed the presence of an Old World bipartite begomovirus, an alphasatellite and a betasatellite. Molecular analysis of full-length sequences showed that Tomato leaf curl New Delhi virus (DNA-A) is associated with its cognate DNA-B, Papaya leaf curl betasatellite and a novel alphasatellite. To the best of our knowledge, this is the first report of an alphasatellite and a betasatellite associated with a bipartite begomovirus.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Fig. 1
Fig. 2

References

  • Ala-Poikela M, Svensson E, Rojas A, Horko T, Paulin L, Valkonen JPT, Kvarnheden A (2005) Genetic diversity and mixed infections of begomoviruses infecting tomato, pepper and cucurbit crops in Nicaragua. Plant Pathol 54:448–459

    Article  CAS  Google Scholar 

  • Briddon RW, Bull SE, Mansoor S, Amin I, Markham PG (2002) Universal primers for the PCR-mediated amplification of DNA β: a molecule associated with some monopartite begomoviruses. Mol Biotechnol 20:315–318

    Article  CAS  PubMed  Google Scholar 

  • Briddon RW, Bull SE, Amin I, Idris AM, Mansoor S, Bedford ID, Dhawan P, Rishi N, Siwatch SS, Abdel-Salam AM, Brown JK, Zafar Y, Markham PG (2003) Diversity of DNA β, a satellite molecule associated with some monopartite begomoviruses. Virology 312:106–121

    Article  CAS  PubMed  Google Scholar 

  • Briddon RW, Bull SE, Amin I, Mansoor S, Bedford ID, Rishi N, Siwatch SS, Zafar Y, Abdel-Salam AM, Markham PG (2004) Diversity of DNA 1: a satellite-like molecule associated with monopartite begomovirus–DNA β complexes. Virology 324:462–474

    Article  CAS  PubMed  Google Scholar 

  • Briddon RW, Brown JK, Moriones E, Stanley J, Zerbini M, Zhou X, Fauquet CM (2008) Recommendations for the classification and nomenclature of the DNA-β satellites of begomoviruses. Arch Virol 153:763–781

    Article  CAS  PubMed  Google Scholar 

  • Brown JK (2010) Phylogenetic biology of the Bemisia tabaci sibling species group. In: Stansly PA, Naranjo SE (eds) Bemisia: bionomics and management of a global pest. Springer Netherlands, Amsterdam, pp 31–67

    Google Scholar 

  • Brown JK, Zerbini FM, Navas-Castillo J, Moriones E, Ramos-Sobrinho R, Silva JC, Fiallo-Olivé E, Briddon RW, Hernández-Zepeda C, Idris A (2015) Revision of begomovirus taxonomy based on pairwise sequence comparisons. Arch Virol 160:1593–1619

    Article  CAS  PubMed  Google Scholar 

  • Castro RM, Moreira L, Rojas MR, Gilbertson RL, Hernández E, Mora F, Ramírez P (2013) Occurrence of Squash yellow mild mottle virus and Pepper golden mosaic virus in potential new hosts in Costa Rica. Plant Pathol 29:285

    Article  Google Scholar 

  • Doyle JJ (1990) Isolation of plant DNA from fresh tissue. Focus 12:13–15

    Google Scholar 

  • Edgar RC (2004) MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinf 5:113

    Article  Google Scholar 

  • Idris AM, Mills-Lujan K, Martin K, Brown JK (2008) Melon chlorotic leaf curl virus: characterization and differential reassortment with closest relatives reveal adaptive virulence in the Squash leaf curl virus clade and host shifting by the host-restricted Bean calico mosaic virus. J Virol 82:1959–1967

    Article  CAS  PubMed  Google Scholar 

  • Idris AM, Shahid MS, Briddon RW, Khan A, Zhu J-K, Brown JK (2011) An unusual alphasatellite associated with monopartite begomoviruses attenuates symptoms and reduces betasatellite accumulation. J Gen Virol 92:706–717

    Article  CAS  PubMed  Google Scholar 

  • Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, Thierer T, Ashton B, Meintjes P, Drummond A (2012) Geneious basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28:1647–1649

    Article  PubMed  PubMed Central  Google Scholar 

  • Lecoq H, Wisler G, Pitrat M (1998) Cucurbit viruses: the classics and the emerging. In: McCreight JD (ed) Cucurbitaceae ‘98: evaluation and enhancement of cucurbit germplasm. ASHS Press, Alexandria, pp 126–142

    Google Scholar 

  • Lecoq H, Dafalla G, Desbiez C, Wipf-Scheibel C, Delécolle B, Lanina T, Ullah Z, Grumet R (2001) Biological and molecular characterization of Moroccan watermelon mosaic virus and a potyvirus isolate from eastern Sudan. Plant Dis 85:547–552

    Article  CAS  Google Scholar 

  • Lefeuvre P, Moriones E (2015) Recombination as a motor of host switches and virus emergence: geminiviruses as case studies. Curr Opin Virol 10:14–19

    Article  CAS  PubMed  Google Scholar 

  • Martin DP, Murrell B, Golden M, Khoosal A, Muhire B (2015) RDP4: Detection and analysis of recombination patterns in virus genomes. Virus Evol 1:vev003

    Article  PubMed  PubMed Central  Google Scholar 

  • Mubin M, Briddon RW, Mansoor S (2009) Complete nucleotide sequence of Chili leaf curl virus and its associated satellites naturally infecting potato in Pakistan. Arch Virol 154:365–368

    Article  CAS  PubMed  Google Scholar 

  • Muhire BM, Varsani A, Martin DP (2014) SDT: a virus classification tool based on pairwise sequence alignment and identity calculation. PLoS One 9:e108277

    Article  PubMed  PubMed Central  Google Scholar 

  • Navas-Castillo J, Fiallo-Olivé E, Sánchez-Campos S (2011) Emerging virus diseases transmitted by whiteflies. Annu Rev Phytopathol 49:219–248

    Article  CAS  PubMed  Google Scholar 

  • Nawaz-ul-Rehman MS, Fauquet CM (2009) Evolution of geminiviruses and their satellites. FEBS Lett 583:1825–1832

    Article  CAS  PubMed  Google Scholar 

  • Paprotka T, Metzler V, Jeske H (2010) The first DNA 1-like α satellites in association with New World begomoviruses in natural infections. Virology 404:148–157

    Article  CAS  PubMed  Google Scholar 

  • Rohde W, Randles JW, Langridge P, Hanold D (1990) Nucleotide sequence of a circular single-stranded DNA associated with coconut foliar decay virus. Virology 176:648–651

    Article  CAS  PubMed  Google Scholar 

  • Romay G, Chirinos D, Geraud-Pouey F, Desbiez C (2010) Association of an atypical alphasatellite with a bipartite New World begomovirus. Arch Virol 155:1843–1847

    Article  CAS  PubMed  Google Scholar 

  • Saunders K, Stanley J (1999) A nanovirus-like DNA component associated with yellow vein disease of Ageratum conyzoides: evidence for interfamilial recombination between plant DNA viruses. Virology 264:142–152

    Article  CAS  PubMed  Google Scholar 

  • Saunders K, Bedford ID, Stanley J (2002) Adaptation from whitefly to leafhopper transmission of an autonomously replicating nanovirus-like DNA component associated with ageratum yellow vein disease. J Gen Virol 83:907–913

    Article  CAS  PubMed  Google Scholar 

  • Schrijnwerkers CCFM, Huijberts N, Bos L (1991) Zucchini yellow mosaic virus: two outbreaks in the Netherlands and seed transmissibility. Neth J Plant Pathol 97:187–191

    Article  Google Scholar 

  • She X, He Z, Yin G, Du Z, Tang Y, Lan G (2015) A new alphasatellite molecule associated with Ageratum yellow vein China virus in the Philippines. J Phytopathol 163:54–57

    Article  CAS  Google Scholar 

  • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Zaidi SSEA, Martin DP, Amin I, Farooq M, Mansoor S (2016) Tomato leaf curl New Delhi virus: a widespread bipartite begomovirus in the territory of monopartite begomoviruses. Mol Plant Pathol. doi:10.1111/mpp.12481

    PubMed  Google Scholar 

  • Zhou X (2013) Advances in understanding begomovirus satellites. Annu Rev Phytopathol 51:357–381

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgements

This article does not contain any studies with human participants or animals performed by the author. SA is supported by a scholarship from the National University of Sciences and Technology (NUST), Islamabad, endowment fund. Thanks to Muhammad Ali (ASAB, NUST) for technical assistance.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Sidra Anwar.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Anwar, S. Distinct association of an alphasatellite and a betasatellite with Tomato leaf curl New Delhi virus in field-infected cucurbit. J Gen Plant Pathol 83, 185–188 (2017). https://doi.org/10.1007/s10327-017-0709-8

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10327-017-0709-8

Keywords

Navigation