Skip to main content
Log in

Bayes estimates as an approximation to maximum likelihood estimates

  • Special Feature: Original Article
  • Bayesian, Fisherian, error, and evidential statistical approaches for population ecology
  • Published:
Population Ecology

Abstract

Ronald A. Fisher, who is the founder of maximum likelihood estimation (ML estimation), criticized the Bayes estimation of using a uniform prior distribution, because we can create estimates arbitrarily if we use Bayes estimation by changing the transformation used before the analysis. Thus, the Bayes estimates lack the scientific objectivity, especially when the amount of data is small. However, we can use the Bayes estimates as an approximation to the objective ML estimates if we use an appropriate transformation that makes the posterior distribution close to a normal distribution. One-to-one correspondence exists between a uniform prior distribution under a transformed scale and a non-uniform prior distribution under the original scale. For this reason, the Bayes estimation of ML estimates is essentially identical to the estimation using Jeffreys prior.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4

Similar content being viewed by others

References

  • Aranda-Ordaz FJ (1981) On two families of transformations to additivity for binary response data. Biometrika 68:357–363

    Article  Google Scholar 

  • Bartlett MS (1947) The use of transformations. Biometrics 3:39–52

    Article  PubMed  CAS  Google Scholar 

  • Bayes T (1763) An essay towards solving a problem in the doctrine of chances. Philos Trans R Soc 53:370–418

    Article  Google Scholar 

  • Beall G (1942) The transformation of data from entomological field experiments so that the analysis of variance becomes applicable. Biometrika 32:243–262

    Article  Google Scholar 

  • Box GEP, Tiao GC (1973) Bayesian inference in statistical analysis. Wiley, New York

    Google Scholar 

  • Clark JS (2005) Why environmental scientists are becoming Bayesians. Ecol Lett 8:2–14

    Article  Google Scholar 

  • Clark JS (2007) Models for ecological data: an introduction. Princeton University Press, Princeton

    Google Scholar 

  • de Valpine P (2003) Better inferences from population-dynamics experiments using Monte Carlo state-space likelihood methods. Ecology 84:3064–3077

    Article  Google Scholar 

  • de Valpine P (2004) Monte Carlo state-space likelihoods by weighted posterior kernel density estimation. J Am Stat Assoc 99:523–535

    Article  Google Scholar 

  • Dennis B (2004) Statistics and the scientific method in ecology (with commentary). In: Taper ML, Lele SR (eds) The nature of scientific evidence: statistical, philosophical, and empirical considerations. University of Chicago Press, Chicago, pp 327–378

    Chapter  Google Scholar 

  • Efron B (1998) R. A. Fisher in the 21st century. Stat Sci 13:95–114

    Article  Google Scholar 

  • Ellison AM (2004) Bayesian inference in ecology. Ecol Lett 7:509–520

    Article  Google Scholar 

  • Fisher RA (1922) On the mathematical foundations of theoretical statistics. Philos Trans R Soc A Math Phys Sci 222:309–368

    Article  Google Scholar 

  • Fisher RA (1973) Statistical methods and scientific inference, 3rd edn. Hafner Press, New York

    Google Scholar 

  • Guerrero VM, Johnson RA (1982) Use of the Box-Cox transformation with binary response models. Biometrika 69:309–314

    Article  Google Scholar 

  • Hubbard R, Bayarri MJ (2003) Confusion over measures of evidence (p’s) versus errors (α’s) in classical statistical testing. Am Stat 57:171–178

    Article  Google Scholar 

  • Jeffreys H (1946) An invariant form for the prior probability in estimation problems. Proc R Soc A Math Phys Sci 186:453–461

    Article  CAS  Google Scholar 

  • Jeffreys H (1961) Theory of probability, 3rd edn. Oxford University Press, Oxford

    Google Scholar 

  • Kaji K, Okada H, Yamanaka M, Matsuda H, Yabe T (2004) Irruption of a colonizing sika deer population. J Wildl Manage 68:889–899

    Article  Google Scholar 

  • Kolmogorov AN (1933) Foundations of the theory of probability (Translated from the 1st German edition of 1933 by N. Morrison, 1956), 2nd English edn. Chelsea Publishing Company, New York

  • Laplace PS (1825) A philosophical essay on probabilities (Translated from the fifth French edition of 1825 by Andrew I. Dale, 1995). Springer, New York

    Google Scholar 

  • Lele SR, Dennis B, Lutscher F (2007) Data cloning: easy maximum likelihood estimation for complex ecological models using Bayesian Markov chain Monte Carlo methods. Ecol Lett 10:551–563

    Article  PubMed  Google Scholar 

  • Lele SR, Nadeem K, Schmuland B (2010) Estimability and likelihood inference for generalized linear mixed models using data cloning. J Am Stat Assoc 105:1617–1625

    Article  CAS  Google Scholar 

  • Marsaglia G (1984) The exact-approximation method for generating random variables in a computer. J Am Stat Assoc 79:218–221

    Article  Google Scholar 

  • Neyman J (1934) On the two different aspects of the representative method. J R Stat Soc 97:558–606

    Article  Google Scholar 

  • Neyman J (1935) On the problem of confidence intervals. Ann Math Stat 6:111–116

    Article  Google Scholar 

  • Ratkowsky DA (1983) Nonlinear regression modeling: a unified practical approach. Dekker, New York

    Google Scholar 

  • Ratkowsky DA (1990) Handbook of nonlinear regression models. Dekker, New York

    Google Scholar 

  • Salsburg D (2001) The lady tasting tea: how statistics revolutionized science in the twentieth century. Owl Books, New York

    Google Scholar 

  • Shibamura R (2004) Statistical theory of R. A. Fisher. Kyushu University Press, Fukuoka (in Japanese)

    Google Scholar 

  • Sólymos P (2010) dclone: data cloning in R. R J 2:29–37

    Google Scholar 

  • Spiegelhalter DJ, Thomas A, Best N, Lunn D (2003) WinBUGS user manual, version 1.4. MRC Biostatistics Unit, Cambridge

  • Uno H, Kaji K, Saitoh T, Matsuda H, Hirakawa H, Yamamura K, Tamada K (2006) Evaluation of relative density indices for sika deer in eastern Hokkaido, Japan. Ecol Res 21:624–632

    Article  Google Scholar 

  • Walker AM (1969) On the asymptotic behaviour of posterior distributions. J R Stat Soc B 31:80–88

    Google Scholar 

  • Wood SN (2010) Statistical inference for noisy nonlinear ecological dynamic systems. Nature 466:1102–1104

    Article  PubMed  CAS  Google Scholar 

  • Yamamura K (1999) Transformation using (x + 0.5) to stabilize the variance of populations. Res Popul Ecol 41:229–234

    Article  Google Scholar 

  • Yamamura K (2014) Estimation of the predictive ability of ecological models. Commun Stat Simul Comput. doi:10.1080/03610918.2014.889161

    Google Scholar 

  • Yamamura K, Matsuda H, Yokomizo H, Kaji K, Uno H, Tamada K, Kurumada T, Saitoh T, Hirakawa H (2008) Harvest-based Bayesian estimation of sika deer populations using state-space models. Popul Ecol 50:131–144

    Article  Google Scholar 

Download references

Acknowledgments

I thank Dr. Yukihiko Toquenaga for providing me the opportunity for presenting my idea in a plenary symposium of the 30th Annual Meeting of the Society of Population Ecology. I thank Dr. Mark Louis Taper for giving me many suggestions including the name ‘empirical Jeffreys prior’. I sincerely thank two anonymous reviewers for their comments that helped me in greatly improving the manuscript.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Kohji Yamamura.

Additional information

This manuscript was submitted for the special feature based on a symposium in Tsukuba, Japan, held on 11 October 2014.

Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary material 1 (PDF 86 kb)

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Yamamura, K. Bayes estimates as an approximation to maximum likelihood estimates. Popul Ecol 58, 45–52 (2016). https://doi.org/10.1007/s10144-015-0526-x

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10144-015-0526-x

Keywords

Navigation