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Amino Acids

, Volume 50, Issue 6, pp 685–697 | Cite as

The protein–protein interaction network and clinical significance of heat-shock proteins in esophageal squamous cell carcinoma

  • Hong Sun
  • Xinyi Cai
  • Haofeng Zhou
  • Xiaoqi Li
  • Zepeng Du
  • Haiying Zou
  • Jianyi Wu
  • Lei Xie
  • Yinwei Cheng
  • Wenming Xie
  • Xiaomei Lu
  • Liyan Xu
  • Longqi Chen
  • Enmin LiEmail author
  • Bingli WuEmail author
Original Article

Abstract

Heat-shock proteins (HSPs), one of the evolutionarily conserved protein families, are widely found in various organisms, and play important physiological functions. Nevertheless, HSPs have not been systematically analyzed in esophageal squamous cell carcinoma (ESCC). In this study, we applied the protein–protein interaction (PPI) network methodology to explore the characteristics of HSPs, and integrate their expression in ESCC. First, differentially expressed HSPs in ESCC were identified from our previous RNA-seq data. By constructing a specific PPI network, we found differentially expressed HSPs interacted with hundreds of neighboring proteins. Subcellular localization analyses demonstrated that HSPs and their interacting proteins distributed in multiple layers, from membrane to nucleus. Functional enrichment annotation analyses revealed known and potential functions for HSPs. KEGG pathway analyses identified four significant enrichment pathways. Moreover, three HSPs (DNAJC5B, HSPA1B, and HSPH1) could serve as promising targets for prognostic prediction in ESCC, suggesting these HSPs might play a significant role in the development of ESCC. These multiple bioinformatics analyses have provided a comprehensive view of the roles of heat-shock proteins in esophageal squamous cell carcinoma.

Keywords

Heat-shock protein Protein–protein interaction network Esophageal squamous cell carcinoma 

Notes

Acknowledgements

This work was supported by Grants from the National Natural Science Foundation of China (nos. 81672473, 81502138), the Science and Technology Program of Guangdong (nos. 2014A030310390, 2017A030313181), the Department of Education, Guangdong Government under the Top-tier University Development Scheme for Research and Control of Infectious Diseases (2016034).

Compliance with ethical standards

Conflict of interest

The authors have no conflicts of interest.

Ethical approval

This article does not contain any studies with human participants or animals performed by any of the authors.

Supplementary material

726_2018_2569_MOESM1_ESM.doc (1.7 mb)
Supplementary material 1 (DOC 1712 kb)
726_2018_2569_MOESM2_ESM.doc (195 kb)
Supplementary material 2 (DOC 195 kb)
726_2018_2569_MOESM3_ESM.xls (133 kb)
Supplementary material 3 (XLS 133 kb)

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Copyright information

© Springer-Verlag GmbH Austria, part of Springer Nature 2018

Authors and Affiliations

  1. 1.Key Laboratory of Molecular Biology in High Cancer Incidence Coastal Chaoshan Area of Guangdong Higher Education InstitutesShantou University Medical CollegeShantouChina
  2. 2.Department of Biochemistry and Molecular BiologyShantou University Medical CollegeShantouChina
  3. 3.Department of Pathology, Shantou Central HospitalAffiliated Shantou Hospital of Sun Yat-sen UniversityShantouChina
  4. 4.Institute of Oncologic PathologyShantou University Medical CollegeShantouChina
  5. 5.Network and Information CenterShantou University Medical CollegeShantouChina
  6. 6.Tumor Hospital Affiliated to Xinjiang Medical UniversityÜrümqiChina
  7. 7.Department of Thoracic SurgeryWest China Hospital of Sichuan UniversitySichuanChina

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