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β-Peptoids: synthesis of a novel dimer having a fully extended conformation

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Abstract

Chiral imines 1a,b, already synthesized in our laboratory, were converted in good yield by reduction into the corresponding N-benzyl-γ-lactams 2a,b. Desilylation followed by oxidation of the hydroxymethyl functionality gave the N-benzyl-β-amino acids 5a,b in good yield and high purity. Starting from compound 6a, the corresponding β-peptoid dimer 8 was prepared, together with its derivatives 9 and 10, these latter displaying conformational restriction about the peptide bond, as evidenced by NMR data.

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References

  • Anelli PL, Biffi C, Montanari F, Quici S (1987) Fast and selective oxidation of primary alcohols to aldehydes or to carboxylic acids and of secondary alcohols to ketones mediated by oxoammonium salts under two-phase conditions. J Org Chem 52:2559–2562

    Article  Google Scholar 

  • Armand P, Kirshenbaum K, Goldsmith RA, Farr-Jones S, Barron AE, Truong KTV, Dill KA, Mierke DF, Cohen FE, Zuckermann RN, Bradley EK (1998) NMR determination of the major solution conformation of a peptoid pentamer with chiral side chains. Proc Natl Acad Sci USA 95:4309–4314

    Google Scholar 

  • Baldauf C, Gunther R, Hofmann HJ (2006) Helices in peptoids of α- and β-peptides. Phys Biol 3:S1–S9

    Article  PubMed  CAS  Google Scholar 

  • Cardoso AL, Lopes SMM, Beja AM, Silva MR, de los Santos JM, Pinho e Melo TMVD, Palacios F (2009) New chiral building blocks of β-peptoid analogs. Tetrahedron 65:9116–9124

    Article  CAS  Google Scholar 

  • Coste J, Frerot E, Jouin P (1994) Coupling N-methylated amino acids using PyBroP and PyCloP halogenophosphonium salts: mechanism and fields of application. J Org Chem 59:2437–2446

    Article  CAS  Google Scholar 

  • Crucianelli E, Martelli G, Orena M, Rinaldi S, Sgolastra F (2009) New isosteres of (R)-2-methylhomoserine and (R)-2-methylaspartic acid by alkylation of a chiral imine leading stereoselectively to a quaternary stereogenic center. Tetrahedron Asymmetry 20:1824–1827

    Article  CAS  Google Scholar 

  • Crucianelli E, Galeazzi R, Martelli G, Orena M, Rinaldi S, Sabatino P (2010) A novel conformationally restricted analogue of 3-methylaspartic acid via stereoselective methylation of chiral pyrrolidin-2-ones. Tetrahedron 66:400–405

    Article  CAS  Google Scholar 

  • Fowler SA, Blackwell HE (2009) Structure–function relationships in peptoids: recent advances toward deciphering the structural requirements for biological function. Org Biomol Chem 7:1508–1524

    Article  PubMed  CAS  Google Scholar 

  • Galeazzi R, Martelli G, Orena M, Rinaldi S, Sabatino P (2005) Conformationally restricted analogues of both (S)-β-homoserine and (S)-aspartic acid from chiral 3-acylamino pyrrolidin-2-ones. Tetrahedron 61:5465–5473

    Article  CAS  Google Scholar 

  • Galeazzi R, Martelli G, Mazzanti A, Orena M, Rinaldi S (2011) Quaternary centres as a tool for modulating foldamer conformation. Chem Eur J 17:12564–12568

    Article  PubMed  CAS  Google Scholar 

  • Gorske BC, Stringer JR, Bastian BL, Fowler SA, Blackwell HE (2009) New strategies for the design of folded peptoids revealed by a survey of noncovalent interactions in model systems. J Am Chem Soc 131:16555–16567

    Article  PubMed  CAS  Google Scholar 

  • Hamper BC, Kolodziej SA, Scates AM, Smith RG, Cortez E (1998) Solid phase synthesis of β-peptoids: N-substituted β-aminopropionic acid oligomers. J Org Chem 63:708–718

    Article  PubMed  CAS  Google Scholar 

  • Huang K, Wu CW, Sanborn TJ, Patch JA, Kirshenbaum K, Zuckermann RN, Barron AE, Radhakrishnan I (2006) A threaded loop conformation adopted by a family of peptoid nonamers. J Am Chem Soc 128:1733–1738

    Article  PubMed  CAS  Google Scholar 

  • Huang ML, Shin SBY, Benson MA, Torres VJ, Kirshenbaum K (2012) A comparison of linear and cyclic peptoid oligomers as potent antimicrobial agents. ChemMedChem 7:114–122

    Article  PubMed  CAS  Google Scholar 

  • Kirshenbaum K, Barron AE, Goldsmith RA, Armand P, Bradley EK, Truong KTV, Dill KA, Cohen FE, Zuckermann RN (1998) Sequence-specific polypeptoids: a diverse family of heteropolymers with stable secondary structure. Proc Natl Acad Sci USA 95:4303–4308

    Article  PubMed  CAS  Google Scholar 

  • Kwon YU, Kodadek T (2007) Quantitative evaluation of the relative cell permeability of peptoids and peptides. J Am Chem Soc 129:1508–1509

    Article  PubMed  CAS  Google Scholar 

  • Menegazzo I, Fries A, Mammi S, Galeazzi R, Martelli G, Orena M, Rinaldi S (2006) Synthesis and structural characterisation as 12-helix of the hexamer of a β-amino acid tethered to a pyrrolidin-2-one ring. Chem Commun 47:4915–4917

    Google Scholar 

  • Miller SM, Simon RJ, Ng S, Banville SC, Zuckermann RN, Kerr JM, Moos WH (1994) Proteolytic studies of homologous peptide and N-substituted glycine peptoid oligomers. Bioorg Med Chem Lett 4:2657–2662

    Article  CAS  Google Scholar 

  • Norgren AS, Zhang S, Arvidsson PI (2006) Synthesis and circular dichroism spectroscopic investigations of oligomeric β-peptoids with α-chiral side chains. Org Lett 8:4533–4536

    Article  PubMed  CAS  Google Scholar 

  • Olsen CA, Ziegler HL, Nielsen HM, Frimodt-Møller N, Jaroszewski JW, Franzyk H (2010) Antimicrobial, hemolytic, and cytotoxic activities of b-peptoid–peptide hybrid oligomers: improved properties compared to natural AMPs. ChemBioChem 11:1356–1360

    Article  PubMed  CAS  Google Scholar 

  • Simon RJ, Kania RS, Zuckermann RN, Huebner VD, Jewell DA, Banville S, Ng S, Wang L, Rosenberg S, Marlowe CK (1992) Peptoids: a modular approach to drug discovery. Proc Natl Acad Sci USA 89:9367–9371

    Article  PubMed  CAS  Google Scholar 

  • Wu CW, Kirshenbaum K, Sanborn TJ, Patch JA, Huang K, Dill KA, Zuckermann RN, Barron AE (2003) Structural and spectroscopic studies of peptoid oligomers with α-chiral aliphatic side chains. J Am Chem Soc 125:13525–13530

    Article  PubMed  CAS  Google Scholar 

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Acknowledgments

We thank Polytechnic University of Marche for financial support.

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Correspondence to Gianluca Martelli.

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Martelli, G., Monsignori, A., Orena, M. et al. β-Peptoids: synthesis of a novel dimer having a fully extended conformation. Amino Acids 43, 2005–2014 (2012). https://doi.org/10.1007/s00726-012-1275-1

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