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Structural diversity of bicyclic amino acids

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Summary.

Over the years biomedical research has been constantly oriented towards the development of new therapeutics based on bioactive peptides and their analogues. In particular, the generation of compounds having structures and functions similar to bioactive peptides, named “peptidomimetics”, raised much interest among organic and medicinal chemists due to the possibility by using such compounds to improve both potency and stability of peptidic lead compounds. In the context of this research area, unnatural amino acids are of great interest in drug discovery, and their use as new building blocks for the development of peptidomimetics with high diversity level and possessing high-ordered structures is of special interest. In particular, medicinal chemistry has taken advantage of the use of amino acid homologues and of cyclic and polycyclic templates to introduce elements of diversity for the generation of new molecules as drug candidates. Bicyclic amino acids have been developed as reverse turn mimetics and dipeptide isosteres, and the constraint imposed by their structures has been reported as a tool for controlling the conformational preferences of modified peptides. Moreover, synthetic efforts have been driven to the generation of diverse structures based on the modulation of ring size and scaffold decoration by suitable functional groups. Herein is reported an overview of different classes of bicyclic amino acids, taking into account the strategies to achieve structurally diverse templates, and some implications in medicinal chemistry are also disclosed.

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References

  • AF Abdel-Magid JH Cohen CA Maryanoff (1999) ArticleTitleChemical process synthesis of β-amino acids and esters Curr Med Chem 6 955–970 Occurrence Handle10519907 Occurrence Handle1:CAS:528:DyaK1MXmtlanurY%3D

    PubMed  CAS  Google Scholar 

  • Alcaide B, Sáez E (2005) Diastereoselective route to novel fused or bridged tricyclic β-lactams through intramolecular nitrone-alkene cycloaddition of 2-azetidinone-tethered alkenylaldehydes – synthetic applications to carbacephams and cyclic β-amino acid derivatives. Eur J Org Chem: 1680–1693

  • E Alonso F López-Ortuz C del Pozo E Peralta A Macías J González (2001) ArticleTitleSpiro β-lactams as β-turn mimetics. Design, synthesis, and NMR conformational analysis J Org Chem 66 6333–6338 Occurrence Handle11559183 Occurrence Handle10.1021/jo015714m Occurrence Handle1:CAS:528:DC%2BD3MXmtFCmur4%3D

    Article  PubMed  CAS  Google Scholar 

  • G Arnott J Clayden SD Hamilton (2006) ArticleTitleAza-bicyclic amino acids by stereoselective dearomatizing cyclisation of the enolates of N-nicotinoyl glycine derivatives Org Lett 8 5325–5328 Occurrence Handle17078709 Occurrence Handle10.1021/ol062126s Occurrence Handle1:CAS:528:DC%2BD28XhtVyntbfE

    Article  PubMed  CAS  Google Scholar 

  • D Arosio M Bertoli L Manzoni C Scolastico (2006) ArticleTitleClick chemistry to functionalise peptidomimetics Tetrahedron Lett 47 3697–3700 Occurrence Handle10.1016/j.tetlet.2006.03.149 Occurrence Handle1:CAS:528:DC%2BD28Xkt1yitr4%3D

    Article  CAS  Google Scholar 

  • A Basso L Banfi R Riva G Guanti (2005) ArticleTitleA novel highly selective chiral auxiliary for the asymmetric synthesis of L- and D-α-amino acid derivatives via a multicomponent Ugi reaction J Org Chem 70 575–579 Occurrence Handle15651804 Occurrence Handle10.1021/jo048389m Occurrence Handle1:CAS:528:DC%2BD2cXhtFCiu7fL

    Article  PubMed  CAS  Google Scholar 

  • Belvisi L, Bernardi A, Manzoni L, Potenza D, Scolastico C (2000a) Conformational analysis of azabicycloalkane amino acid scaffolds as reverse-turn inducer dipeptide mimics. Eur J Org Chem: 2563–2569

  • Belvisi L, Gennari C, Madder A, Mielgo A, Potenza D, Scolastico C (2000b) Rationally designed bicyclic lactams control different turn motifs and folding patterns in hexapeptide mimics. Eur J Org Chem: 695–699

  • Belvisi L, Colombo L, Manzoni L, Potenza D, Scolastico C (2004) Design, synthesis, conformational analysis and application of azabicycloalkane amino acids as constrained dipeptide mimics. Synlett: 1449–1471

  • L Belvisi A Bernardi M Colombo L Manzoni D Potenza C Scolastico G Giannini M Marcellini T Riccioni M Castorina P Lo Giudice C Pisano (2006) ArticleTitleTargeting integrins: insights into structure and activity of cyclic RGD pentapeptide mimics containing azabicycloalkane amino acids Bioorg Med Chem 14 169–180 Occurrence Handle16214345 Occurrence Handle10.1016/j.bmc.2005.08.048 Occurrence Handle1:CAS:528:DC%2BD2MXht1egsLzF

    Article  PubMed  CAS  Google Scholar 

  • JR Bencsik T Kercher M O’Sullivan JA Josey (2003) ArticleTitleEfficient, Stereoselective synthesis of oxazolo[3,2-a]pyrazin-5-ones: novel bicyclic lactam scaffolds from the bicyclocondensation of 3-aza-1,5-ketoacids and amino alcohols Org Lett 5 2727–2730 Occurrence Handle12868900 Occurrence Handle10.1021/ol030065h Occurrence Handle1:CAS:528:DC%2BD3sXks1Krt7s%3D

    Article  PubMed  CAS  Google Scholar 

  • H Bittermann J Einsiedel H Hübner P Gmeiner (2004) ArticleTitleEvaluation of lactam-bridged neurotensin analogues adjusting ψ(Pro10) close to the experimentally derived bioactive conformation of NT(8-13) J Med Chem 47 5587–5590 Occurrence Handle15481995 Occurrence Handle10.1021/jm049644y Occurrence Handle1:CAS:528:DC%2BD2cXnvFSrsb4%3D

    Article  PubMed  CAS  Google Scholar 

  • Brackmann F, Colombo N, Cabrele C, de Meijere A (2006) An improved synthesis of 3,4-(aminomethano)proline and its incorporation into small oligopeptides. Eur J Org Chem: 4440–4450

  • Bravin FM, Busnelli G, Colombo M, Gatti F, Manzoni L, Scolastico C (2004) Synthesis of conformationally restricted and optically pure analogues of serine-proline dipeptide via aldol condensation. Synthesis: 353–358

  • E Buñuel AM Gil MD Díaz-De-Villegas C Cativiela (2001) ArticleTitleSynthesis of constrained prolines by Diels-Alder reaction using a chiral unsaturated oxazolone from (R)-glyceraldehyde as starting material Tetrahedron 57 6417–6427 Occurrence Handle10.1016/S0040-4020(01)00533-6

    Article  Google Scholar 

  • D Casabona C Cativiela (2006) ArticleTitleEfficient synthesis of a new pipecolic acid analogue with a bicyclic structure Tetrahedron 62 10000–10004 Occurrence Handle10.1016/j.tet.2006.08.006 Occurrence Handle1:CAS:528:DC%2BD28XptlCkt70%3D

    Article  CAS  Google Scholar 

  • LL Chang Q Truong GA Doss M MacCoss K Lyons E McCauley R Mumford G Forrest S Vincent JA Schmidt WK Hagmann (2007) ArticleTitleHighly constrained bicyclic VLA-4 antagonists Bioorg Med Chem Lett 17 597–601 Occurrence Handle17118652 Occurrence Handle10.1016/j.bmcl.2006.11.011 Occurrence Handle1:CAS:528:DC%2BD2sXotFahsA%3D%3D

    Article  PubMed  CAS  Google Scholar 

  • WH Chiou N Mizutani I Ojima (2007) ArticleTitleHighly efficient synthesis of azabicyclo[x.y.0]alkane amino acids and congeners by means of Rh-catalyzed cyclohydrocarbonylation J Org Chem 72 1871–1882 Occurrence Handle17346029 Occurrence Handle10.1021/jo061692y Occurrence Handle1:CAS:528:DC%2BD28Xht1WhsLnL

    Article  PubMed  CAS  Google Scholar 

  • DC Cole (1994) ArticleTitleRecent stereoselective synthetic approaches to β-amino acids Tetrahedron 50 9517–9582 Occurrence Handle10.1016/S0040-4020(01)85527-7 Occurrence Handle1:CAS:528:DyaK2MXitFemur4%3D

    Article  CAS  Google Scholar 

  • P Conti M De Amici S Joppolo di Ventimiglia TB Stensbøl U Madsen H Bräuner-Osborne E Russo G De Sarro G Bruno C De Micheli (2003) ArticleTitleSynthesis and anticonvulsant activity of novel bicyclic acidic amino acids J Med Chem 46 3102–3108 Occurrence Handle12825948 Occurrence Handle10.1021/jm0308085 Occurrence Handle1:CAS:528:DC%2BD3sXktVKqtLc%3D

    Article  PubMed  CAS  Google Scholar 

  • FM Cordero F Pisaneschi K Meschini Batista S Valenza F Machetti A Brandi (2005) ArticleTitleA new bicyclic dipeptide isostere with pyrrolizidinone skeleton J Org Chem 70 856–867 Occurrence Handle15675843 Occurrence Handle10.1021/jo0487653 Occurrence Handle1:CAS:528:DC%2BD2MXjtFGrsw%3D%3D

    Article  PubMed  CAS  Google Scholar 

  • J Czombos W Aelterman A Tkachev JC Martins D Tourwé A Péter G Tóth F Fülöp N De Kimpe (2000) ArticleTitleConvenient synthesis of 3,4-methano-1,2,3,4-tetrahydroisoquinoline-3-carboxylic acid and its derivatives as doubly constrained nonproteinogenic amino acid derivatives J Org Chem 65 5469–5475 Occurrence Handle10970283 Occurrence Handle10.1021/jo9917994 Occurrence Handle1:CAS:528:DC%2BD3cXlsFKms7o%3D

    Article  PubMed  CAS  Google Scholar 

  • Danieli E, Trabocchi A, Menchi G, Guarna A (2005) Synthesis of glycidol- and sugar-derived bicyclic β- and γ/δ-amino acids for peptidomimetic design. Eur J Org Chem: 4372–4381

  • DE Davies PM Doyle RD Farrant RD Hill PB Hitchcock PN Sanderson DW Young (2003) ArticleTitleSynthesis of an external β-turn based on the GLDV motif of cell adhesion proteins Tetrahedron Lett 44 8887–8891 Occurrence Handle10.1016/j.tetlet.2003.09.170 Occurrence Handle1:CAS:528:DC%2BD3sXos1Ogtr8%3D

    Article  CAS  Google Scholar 

  • C Dominguez L Prieto MJ Valli SM Massey M Bures RA Wright BG Johnson SL Andis A Kingston DD Schoepp JA Monn (2005) ArticleTitleMethyl substitution of 2-aminobicyclo[3.1.0]hexane 2,6-dicarboxylate (LY354740) determines functional activity at metabotropic glutamate receptors: identification of a subtype selective mGlu2 receptor agonist J Med Chem 48 3605–3612 Occurrence Handle15887967 Occurrence Handle10.1021/jm040222y Occurrence Handle1:CAS:528:DC%2BD2MXjsVGgtr0%3D

    Article  PubMed  CAS  Google Scholar 

  • PS Dragovich R Zhou TJ Prins (2002) ArticleTitleSynthesis of an optically active, bicyclic 2-pyridone dipeptide mimetic J Org Chem 67 741–746 Occurrence Handle11856014 Occurrence Handle10.1021/jo010712n Occurrence Handle1:CAS:528:DC%2BD38XislahtA%3D%3D

    Article  PubMed  CAS  Google Scholar 

  • HME Duggan PB Hitchcock DW Young (2005) ArticleTitleSynthesis of 5/7-, 5/8- and 5/9-bicyclic lactam templates as constraints for external β-turns Org Biomol Chem 3 2287–2295 Occurrence Handle16010363 Occurrence Handle10.1039/b503014e Occurrence Handle1:CAS:528:DC%2BD2MXmtVeksrs%3D

    Article  PubMed  CAS  Google Scholar 

  • AB Dyatkin WJ Hoekstra WA Kinney M Kontoyianni RJ Santulli ES Kimball MC Fisher SM Prouty WM Abraham P Andrade-Gordon DJ Hlasta W He PJ Hornby BP Damiano BE Maryanoff (2004) ArticleTitleAza-bicyclic amino acid sulfonamides as α4β14β7 integrin antagonists Bioorg Med Chem Lett 14 591–596 Occurrence Handle14741249 Occurrence Handle10.1016/j.bmcl.2003.11.063 Occurrence Handle1:CAS:528:DC%2BD2cXltFOrsw%3D%3D

    Article  PubMed  CAS  Google Scholar 

  • AB Dyatkin Y Gong TA Miskoswski ES Kimball SM Prouty MC Fisher RJ Santulli CR Schneider NH Wallace PJ Hornby C Diamond WA Kinney BE Maryanoff BP Damiano W He (2005) ArticleTitleAza-bicyclic amino acid carboxamides as α4β14β7 integrin receptor antagonists Bioorg Med Chem 13 6693–6702 Occurrence Handle16112583 Occurrence Handle10.1016/j.bmc.2005.07.022 Occurrence Handle1:CAS:528:DC%2BD2MXhtFyksrbE

    Article  PubMed  CAS  Google Scholar 

  • MA Estiarte M Rubiralta A Diez (2000) ArticleTitleOxazolopiperidin-2-ones as Type II′ β-turn mimetics: synthesis and conformational analysis J Org Chem 65 6992–6999 Occurrence Handle11031021 Occurrence Handle10.1021/jo000416v Occurrence Handle1:CAS:528:DC%2BD3cXms1Shtrs%3D

    Article  PubMed  CAS  Google Scholar 

  • J Gante (1994) ArticleTitlePeptidomimetics-tailored enzyme inhibitors Angew Chem Int Ed Engl 33 1699–1720 Occurrence Handle10.1002/anie.199416991

    Article  Google Scholar 

  • J Gardiner AD Abell (2003) ArticleTitleA diastereoselective synthesis of the tetrahydropyridazinone core of 2-oxo-1,6-diazobicyclo[4.3.0]nonane-9-carboxylate-based peptidimimetics starting from (S)-phenylalanine Tetrahedron Lett 44 4227–4230 Occurrence Handle10.1016/S0040-4039(03)00882-7 Occurrence Handle1:CAS:528:DC%2BD3sXjsVGgsLk%3D

    Article  CAS  Google Scholar 

  • SH Gellman (1998) ArticleTitleFoldamers: a manifesto Acc Chem Res 31 173–180 Occurrence Handle10.1021/ar960298r Occurrence Handle1:CAS:528:DyaK1cXhvF2qtr0%3D

    Article  CAS  Google Scholar 

  • A Giannis T Kolter (1993) ArticleTitlePeptidomimetics for receptor ligands-discovery, development, and medical perspectives Angew Chem Int Ed Engl 32 1244–1267 Occurrence Handle10.1002/anie.199312441

    Article  Google Scholar 

  • AM Gil E Orús V López-Carrillo E Buñuel C Cativiela (2005) ArticleTitleNew enantiopure 7-azabornane β-substituted prolines by SN2 displacements at the Cγ of the side chain Tetrahedron Asymmetr 16 3115–3123 Occurrence Handle10.1016/j.tetasy.2005.08.003 Occurrence Handle1:CAS:528:DC%2BD2MXhtVSqsrjO

    Article  CAS  Google Scholar 

  • OO Grygorenko OS Artamonov GV Palamarchuk RI Zubatyuk OV Shishkin IG Komarov (2006) ArticleTitleStereoselective synthesis of 2,4-methanoproline homologues Tetrahedron Asymmetr 17 252–258 Occurrence Handle10.1016/j.tetasy.2005.12.009 Occurrence Handle1:CAS:528:DC%2BD28Xht1ymt7o%3D

    Article  CAS  Google Scholar 

  • X Gu X Tang S Cowell J Ying VJ Hruby (2002) ArticleTitleA novel strategy toward [6,5]-bicyclic β-turn dipeptide Tetrahedron Lett 43 6669–6672 Occurrence Handle10.1016/S0040-4039(02)01338-2 Occurrence Handle1:CAS:528:DC%2BD38XmsVWjsbs%3D

    Article  CAS  Google Scholar 

  • X Gu S Cowell J Ying X Tang VJ Hruby (2003) ArticleTitleSynthesis of β-phenyl-δ, ɛ-unsaturated amino acids and stereoselective introduction of side chain groups into [4,3,0]-bicyclic β-turn dipeptides Tetrahedron Lett 44 5863–5866 Occurrence Handle10.1016/S0040-4039(03)01383-2 Occurrence Handle1:CAS:528:DC%2BD3sXlt1aku7Y%3D

    Article  CAS  Google Scholar 

  • X Gu J Ying RS Agnes E Navratilova P Davis G Stahl F Porreca HI Yamamura VJ Hruby (2004) ArticleTitleNovel design of bicyclic β-turn dipeptides on solid-phase supports and synthesis of [3.3.0]-bicyclo[2,3]-Leu-enkephalin analogues Org Lett 6 3285–3288 Occurrence Handle15355033 Occurrence Handle10.1021/ol0488183 Occurrence Handle1:CAS:528:DC%2BD2cXmvV2js7o%3D

    Article  PubMed  CAS  Google Scholar 

  • M Günter HJ Gais (2003) ArticleTitleAsymmetric synthesis of fused bicyclic α-amino acids having a hexahydro-cyclopenta[c]pyridine skeleton via intramolecular Pauson-Khand reaction of 1-sulfonimidoyl-substituted 5-azaoct-1-en-7-ynes J Org Chem 68 8037–8041 Occurrence Handle14535780 Occurrence Handle10.1021/jo030171x

    Article  PubMed  Google Scholar 

  • Haberhauer G, Rominger F (2003) Straightforward synthesis of a novel class of rigid bicyclic dipeptidomimetics from simple dipeptides: fused imidazole amino acids. Synlett: 780–784

  • A Hackling R Ghosh S Perachon A Mann HD Höltje CG Wermuth JC Schwartz W Sippl P Sokoloff H Stark (2003) ArticleTitle N-(ω-(4-(2-Methoxyphenyl)piperazin-1-yl)alkyl)carboxamides as dopamine D2 and D3 receptor ligands J Med Chem 46 3883–3899 Occurrence Handle12930150 Occurrence Handle10.1021/jm030836n Occurrence Handle1:CAS:528:DC%2BD3sXlvVSjsr0%3D

    Article  PubMed  CAS  Google Scholar 

  • L Halab JAJ Becker Z Darula D Tourwé BL Kieffer F Simoni WD Lubell (2002) ArticleTitleProbing opioid receptor interactions with azacycloalkane amino acids. Synthesis of a potent and selective ORL1 anatagonist J Med Chem 45 5353–5357 Occurrence Handle12431062 Occurrence Handle10.1021/jm020078l Occurrence Handle1:CAS:528:DC%2BD38XnvV2ltbg%3D

    Article  PubMed  CAS  Google Scholar 

  • S Hanessian Luo X R Schaum S Michnick (1998) ArticleTitleDesign of secondary structures in unnatural peptides: stable helical γ-tetra-, hexa-, and octapeptides and consequences of α-substitution J Am Chem Soc 120 8569–8570 Occurrence Handle10.1021/ja9814671 Occurrence Handle1:CAS:528:DyaK1cXkvF2ntb4%3D

    Article  CAS  Google Scholar 

  • S Hanessian H Sailes A Munro E Therrien (2003) ArticleTitleSynthesis of diversely functionalized indolizidinones and related bicyclic lactams using intramolecular Grubbs olefin metathesis and Dieckmann condensation J Org Chem 68 7219–7233 Occurrence Handle12968870 Occurrence Handle10.1021/jo030145z Occurrence Handle1:CAS:528:DC%2BD3sXms1eqsbw%3D

    Article  PubMed  CAS  Google Scholar 

  • PW Harris MA Brimble PD Gluckman (2003) ArticleTitleSynthesis of cyclic proline-containing peptides via ring-closing metathesis Org Lett 5 1847–1850 Occurrence Handle12762668 Occurrence Handle10.1021/ol034370e Occurrence Handle1:CAS:528:DC%2BD3sXjt1Kmur0%3D

    Article  PubMed  CAS  Google Scholar 

  • K Hattori RB Grossman (2003) ArticleTitleFunctionalized cis- and trans-fused bicyclic α-amino acids via stereoselective double annulation and dequaternization reactions J Org Chem 68 1409–1417 Occurrence Handle12585881 Occurrence Handle10.1021/jo026643+ Occurrence Handle1:CAS:528:DC%2BD3sXht1Whsrc%3D

    Article  PubMed  CAS  Google Scholar 

  • T Hintermann K Gademann B Jaun D Seebach (1998) ArticleTitleGamma-peptides forming more stable secondary structures than alpha-peptides: synthesis and helical NMR-solution structure of the gamma-hexapeptide analog of H-(Val-Ala-Leu)(2)-OH Helv Chim Acta 81 983–1002 Occurrence Handle10.1002/hlca.19980810514 Occurrence Handle1:CAS:528:DyaK1cXjsFGmsr4%3D

    Article  CAS  Google Scholar 

  • BL Iverson (1997) ArticleTitleBetas are brought into the fold Nature 385 113–115 Occurrence Handle8990107 Occurrence Handle10.1038/385113a0 Occurrence Handle1:CAS:528:DyaK2sXksFKmtQ%3D%3D

    Article  PubMed  CAS  Google Scholar 

  • G Jeannotte WD Lubell (2004) ArticleTitleSynthesis of fused heteroarylprolines and pyrrolopyrroles J Org Chem 69 4656–4662 Occurrence Handle15230586 Occurrence Handle10.1021/jo049612i Occurrence Handle1:CAS:528:DC%2BD2cXks1aru7s%3D

    Article  PubMed  CAS  Google Scholar 

  • B Jiang M Xu (2002) ArticleTitleCatalytic diastereoselective Pauson-Khand reaction: an efficient route to enantiopure cyclopenta[c]proline derivatives Org Lett 4 4077–4080 Occurrence Handle12423090 Occurrence Handle10.1021/ol026826i Occurrence Handle1:CAS:528:DC%2BD38XotVegtLc%3D

    Article  PubMed  CAS  Google Scholar 

  • E Juaristi H Lopez-Ruiz (1999) ArticleTitleRecent advances in the enantioselective synthesis of β-amino acids Curr Med Chem 6 983–1004 Occurrence Handle10519909 Occurrence Handle1:CAS:528:DyaK1MXmtlanu74%3D

    PubMed  CAS  Google Scholar 

  • S Koep HJ Gais G Raabe (2003) ArticleTitleAsymmetric synthesis of unsaturated fused bicyclic proline analogues through amino alkylation of cyclic bis(allylsulfoximine)titanium complexes and migratory cyclization of δ-amino alkenyl aminosulfoxonium salts J Am Chem Soc 125 13243–13251 Occurrence Handle14570500 Occurrence Handle10.1021/ja030324y Occurrence Handle1:CAS:528:DC%2BD3sXns12hur0%3D

    Article  PubMed  CAS  Google Scholar 

  • F Köhler HJ Gais G Raabe (2007) ArticleTitleAsymmetric synthesis of highly substituted γ-amino acids from allyltitanium sulfoximines Org Lett 9 1231–1234 Occurrence Handle17326643 Occurrence Handle10.1021/ol063082q

    Article  PubMed  Google Scholar 

  • Lalli C, Trabocchi A, Guarna F, Mannino C, Guarna A, (2006) Synthesis of a bicyclic proline analogue from L-ascorbic acid. Synthesis: 3122–3126

  • P Langer H Kählig K Zierler-Gould JW Bats J Mulzer (2002) ArticleTitleA bicyclic cispentacin derivative as a novel reverse turn inducer in a GnRH mimetic J Org Chem 67 6878–6883 Occurrence Handle12353977 Occurrence Handle10.1021/jo025857o Occurrence Handle1:CAS:528:DC%2BD38XmvVGnu7Y%3D

    Article  PubMed  CAS  Google Scholar 

  • C Lescop L Mévellec F Huet (2001) ArticleTitleA new synthesis of 2-azabicyclo[2.1.1]hexanes J Org Chem 66 4187–4193 Occurrence Handle11397152 Occurrence Handle10.1021/jo001790y Occurrence Handle1:CAS:528:DC%2BD3MXjsFWhsr4%3D

    Article  PubMed  CAS  Google Scholar 

  • YT Liu JK Wong M Tao R Osterman M Sannigrahi VM Girijavallabhan A Saksena (2004) ArticleTitleCarboxy mediated stereoselective reduction of ketones with sodium triacetoxyborohydride: synthesis of novel 3,4-fused tetrahydropyran and tetrahydrofuran prolines Tetrahedron Lett 45 6097–6100 Occurrence Handle10.1016/j.tetlet.2004.06.070 Occurrence Handle1:CAS:528:DC%2BD2cXlvVSrt7o%3D

    Article  CAS  Google Scholar 

  • F Machetti A Ferrali G Menchi EG Occhiato A Guarna (2000) ArticleTitleOligomers of enantiopure bicyclic γ/δ-amino acids (BTAa). 1. Synthesis and conformational analysis of 3-aza-6,8-dioxabicyclo[3.2.1]octane-7-carboxylic acid oligomers (PolyBTG) Org Lett 2 3987–3990 Occurrence Handle11112624 Occurrence Handle10.1021/ol006548s Occurrence Handle1:CAS:528:DC%2BD3cXnvFartrk%3D

    Article  PubMed  CAS  Google Scholar 

  • S Maechling SE Norman JE McKendrick S Basra K Köppner S Blechert (2006) ArticleTitleRing-rearrangement metathesis of bicyclic amino acid derivatives Tetrahedron Lett 47 189–192 Occurrence Handle10.1016/j.tetlet.2005.10.155 Occurrence Handle1:CAS:528:DC%2BD2MXht12qsbzI

    Article  CAS  Google Scholar 

  • Maison W, Grohs DC, Prenzel AHGP (2004) Efficient synthesis of structurally diverse diazabicycloalkanes: scaffolds for modular dipeptide mimetics with tunable backbone conformations. Eur J Org Chem: 1527–1543

  • PK Mandal KK Kaluarachchi D Ogrin SG Bott JS McMurray (2005) ArticleTitleAn efficient synthesis of the constrained peptidomimetic 2-oxo-3-(N-9-fluorenyloxycarbonylamino)-1-azabicyclo[4.3.0]nonane-9-carboxylic acid from pyroglutamic acid J Org Chem 70 10128–10131 Occurrence Handle16292854 Occurrence Handle10.1021/jo0515935 Occurrence Handle1:CAS:528:DC%2BD2MXhtFKgsLzK

    Article  PubMed  CAS  Google Scholar 

  • S Manku DP Curran (2005) ArticleTitleFluorus mixture synthesis of 4-alkylidene cyclopentenones via a rhodium-catalyzed [2 + 2 + 1] cycloaddition of alkynyl allenes J Comb Chem 7 63–68 Occurrence Handle15638481 Occurrence Handle10.1021/cc049899x Occurrence Handle1:CAS:528:DC%2BD2cXpvFWjtb8%3D

    Article  PubMed  CAS  Google Scholar 

  • Manzoni L, Belvisi L, Di Carlo E, Forni A, Invernizzi D, Scolastico C (2006) Synthesis of functionalized azabicycloalkane amino acids as dipeptide mimics. Synthesis: 1133–1140

  • R Millet J Domarkas P Rombaux B Rigo R Houssin JP Hénichart (2002) ArticleTitleSynthesis of an azabicycloalkane amino acid scaffold as potential rigid dipeptide mimetic Tetrahedron Lett 43 5087–5088 Occurrence Handle10.1016/S0040-4039(02)00992-9 Occurrence Handle1:CAS:528:DC%2BD38XkvVent74%3D

    Article  CAS  Google Scholar 

  • C Mouriès B Deguin F Lamari MJ Foglietti F Tillequin M Koch (2003) ArticleTitleHomochiral rigid γ-amino acid glycosides from aucubin Tetrahedron Asymm 14 1083–1086 Occurrence Handle10.1016/S0957-4166(03)00020-X

    Article  Google Scholar 

  • Y Otani S Futaki T Kiwada Y Sugiura A Muranaka N Kobayashi M Uchiyama K Yamaguchi T Ohwada (2006) ArticleTitleOligomers of β-amino acid bearing non-planar amides form ordered structures Tetrahedron 62 11635–11644 Occurrence Handle10.1016/j.tet.2006.09.062 Occurrence Handle1:CAS:528:DC%2BD28XhtFyqsLfJ

    Article  CAS  Google Scholar 

  • Peri F, Cipolla L, La Ferla B, Nicotra F (2000) Synthesis of bicyclic sugar azido acids and their incorporation in cyclic peptides. Chem Commun: 2303–2304

  • F Polyak WD Lubell (2001) ArticleTitleMimicry of peptide backbone geometry and heteroatomic side-chain functionality: synthesis of enantiopure indolizidin-2-one amino acids possessing alcohol, acid, and azide functional groups J Org Chem 66 1171–1180 Occurrence Handle11312944 Occurrence Handle10.1021/jo001251t Occurrence Handle1:CAS:528:DC%2BD3MXmslSntQ%3D%3D

    Article  PubMed  CAS  Google Scholar 

  • W Qiu X Gu VA Soloshonok MD Carducci VJ Hruby (2001) ArticleTitleStereoselective synthesis of conformationally constrained reverse turn dipeptide mimetics Tetrahedron Lett 42 145–148 Occurrence Handle10.1016/S0040-4039(00)01864-5 Occurrence Handle1:CAS:528:DC%2BD3MXjt1aksQ%3D%3D

    Article  CAS  Google Scholar 

  • MHV Ramana Rao E Pinyol WD Lubell (2007) ArticleTitlerigid dipeptide mimics: synthesis of enantiopure C6-functionalized pyrrolizidinone amino acids J Org Chem 72 736–743 Occurrence Handle10.1021/jo0616761

    Article  Google Scholar 

  • Rammeloo T, Stevens CV (2002) A new and short method for the synthesis of 2,4-methanoproline. Chem Commun: 250–254

  • T Rammeloo CV Stevens N De Kimpe (2002) ArticleTitleSynthesis of 2,4-methanoproline analogues via an addition-intramolecular substitution sequence J Org Chem 67 6509–6513 Occurrence Handle12201774 Occurrence Handle10.1021/jo025897s Occurrence Handle1:CAS:528:DC%2BD38XmtVyms7Y%3D

    Article  PubMed  CAS  Google Scholar 

  • M Salvati FM Cordero F Pisaneschi F Bucelli A Brandi (2005) ArticleTitleNew developments in the synthesis of pyrrolizidinone-based dipeptide isosteres Tetrahedron 61 8836–8847 Occurrence Handle10.1016/j.tet.2005.07.020 Occurrence Handle1:CAS:528:DC%2BD2MXns1ShtLw%3D

    Article  CAS  Google Scholar 

  • D Scarpi EG Occhiato A Trabocchi RJ Leatherbarrow ABE Brauer M Nievo A Guarna (2001) ArticleTitleIntroduction of the new dipeptide isostere 7-endo-BtA as reverse turn inducer in a Bowman-Birk proteinase inhibitor: synthesis and conformational analysis Bioorg Med Chem 9 1625–1632 Occurrence Handle11408182 Occurrence Handle10.1016/S0968-0896(01)00046-3 Occurrence Handle1:CAS:528:DC%2BD3MXkt1KjsbY%3D

    Article  PubMed  CAS  Google Scholar 

  • Seebach D, Matthews JL (1997) β-Peptides: a surprise at every turn. Chem Commun: 2015–2022

  • N Sewald (1996) ArticleTitleStereoselective synthesis of β-amino acids via conjugate addition of nitrogen nucleophiles to α,β-unsaturated esters. Recent advances Amino Acids 11 397–408 Occurrence Handle10.1007/BF00807944 Occurrence Handle1:CAS:528:DyaK2sXlsFOhuw%3D%3D

    Article  CAS  Google Scholar 

  • JP Strachan RC Whitaker CH Miller BS Bhatti (2006) ArticleTitleSynthesis of bicyclic tertiary α-amino acids J Org Chem 71 9909–9911 Occurrence Handle17168622 Occurrence Handle10.1021/jo061977a Occurrence Handle1:CAS:528:DC%2BD28XhtlCgsrfL

    Article  PubMed  CAS  Google Scholar 

  • H Sun C Martin D Kesselring R Keller KD Moeller (2006) ArticleTitleBuilding functionalized peptidomimetics: use of electroauxiliaries for introducing N-acyliminium ions into peptides J Am Chem Soc 128 13761–13771 Occurrence Handle17044704 Occurrence Handle10.1021/ja064737l Occurrence Handle1:CAS:528:DC%2BD28XhtVajtrbI

    Article  PubMed  CAS  Google Scholar 

  • L Szabo BL Smith KD McReynolds AL Parrill ER Morris J Gervay (1998) ArticleTitleSolid phase synthesis and secondary structural studies of (1->5)-amide linked sialooligomers J Org Chem 63 1074–1078 Occurrence Handle10.1021/jo971415e Occurrence Handle1:CAS:528:DyaK1cXnsVWmsQ%3D%3D

    Article  CAS  Google Scholar 

  • VI Tararov R Kadyrov Z Kadyrova N Dubrovina A Börner (2002) ArticleTitleAn improved synthesis of enantiopure 2-azabicyclo[2.2.1]heptane-3-carboxylic acid Tetrahedron Asymm 13 25–28 Occurrence Handle10.1016/S0957-4166(02)00048-4 Occurrence Handle1:CAS:528:DC%2BD38XisVyqur0%3D

    Article  CAS  Google Scholar 

  • Y Tong YM Fobian M Wu ND Boyd KD Moeller (2000) ArticleTitleConformationally constrained substance P analogues: the total synthesis of a constrained peptidomimetic for the Phe7-Phe8 region J Org Chem 65 2484–2493 Occurrence Handle10789461 Occurrence Handle10.1021/jo991649t Occurrence Handle1:CAS:528:DC%2BD3cXhvVylu7k%3D

    Article  PubMed  CAS  Google Scholar 

  • A Trabocchi N Cini G Menchi A Guarna (2003) ArticleTitleA new bicyclic proline-mimetic amino acid Tetrahedron Lett 44 3489–3492 Occurrence Handle10.1016/S0040-4039(03)00663-4 Occurrence Handle1:CAS:528:DC%2BD3sXislejurc%3D

    Article  CAS  Google Scholar 

  • Trabocchi A, Menchi G, Guarna F, Machetti F, Scarpi D, Guarna A (2006) Design, synthesis, and applications of 3-aza-6,8-dioxabicyclo[3.2.1]octane-based scaffolds for peptidomimetic chemistry. Synlett: 331–353

  • A Trabocchi EG Occhiato D Potenza A Guarna (2002) ArticleTitleSynthesis and conformational analysis of small peptides containing 6-endo-BT(t)L scaffolds as reverse turn mimetics J Org Chem 67 7483–7492 Occurrence Handle12375983 Occurrence Handle10.1021/jo0202132 Occurrence Handle1:CAS:528:DC%2BD38XntVKmtro%3D

    Article  PubMed  CAS  Google Scholar 

  • N Valls M López-Canet M Vallribera J Bonjoch (2001) ArticleTitleFirst total syntheses of aeruginosin 298-A and aeruginosin 298-B, based on a stereocontrolled route to the new amino acid 6-hydroxyoctahydroindole-2-carboxylic acid Chem Eur J 7 3446–3460 Occurrence Handle10.1002/1521-3765(20010817)7:16<3446::AID-CHEM3446>3.0.CO;2-0 Occurrence Handle1:CAS:528:DC%2BD3MXmsFKmu74%3D

    Article  CAS  Google Scholar 

  • RM van Well MEA Meijer HS Overkleeft JH van Boom GA van der Marel M Overhand (2003) ArticleTitleSynthesis of bridged sugar amino acids: a new entry into conformationally locked δ- and ɛ-amino acids Tetrahedron 59 2423–2434 Occurrence Handle10.1016/S0040-4020(03)00288-6 Occurrence Handle1:CAS:528:DC%2BD3sXitlKis7c%3D

    Article  CAS  Google Scholar 

  • W Wang J Yang J Ying C Xiong J Zhang C Cai VJ Hruby (2002) ArticleTitleStereoselective synthesis of dipeptide β-turn mimetics: 7-benzyl and 8-phenyl substituted azabicyclo[4.3.0]nonane amino acid esters J Org Chem 67 6353–6360 Occurrence Handle12201753 Occurrence Handle10.1021/jo0203591 Occurrence Handle1:CAS:528:DC%2BD38XlslKjurs%3D

    Article  PubMed  CAS  Google Scholar 

  • BV Yang LM Doweyko (2005) ArticleTitleHighly regioselective Diels-Alder reactions of 9-substituted anthracenes and 2-acetamidoacrylate: synthesis of conformationally constrained α-amino acids Tetrahedron Lett 46 2857–2860 Occurrence Handle10.1016/j.tetlet.2005.02.131 Occurrence Handle1:CAS:528:DC%2BD2MXis1elurs%3D

    Article  CAS  Google Scholar 

  • SJ Yeo KS Jeong H Han J Kim N Jeong (2006) ArticleTitleɛ-Amino acids based on bicyclic skeleton: bicyclo[3.3.0]octane-5-amino-1-carboxylic acids Tetrahedron Lett 47 7389–7393 Occurrence Handle10.1016/j.tetlet.2006.07.137 Occurrence Handle1:CAS:528:DC%2BD28XptlCrsrs%3D

    Article  CAS  Google Scholar 

  • J Zhang C Xiong W Wang J Ying VJ Hruby (2002) ArticleTitleStereoselective bromination-Suzuki cross-coupling of dehydroamino acids to form novel reverse-turn peptidomimetics: substituted unsaturated and saturated indolizidinone amino acids Org Lett 4 4029–4032 Occurrence Handle12423078 Occurrence Handle10.1021/ol020160a Occurrence Handle1:CAS:528:DC%2BD38XotVymur0%3D

    Article  PubMed  CAS  Google Scholar 

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Correspondence to A. Guarna.

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Authors’ address: Antonio Guarna, Dipartimento di Chimica Organica “Ugo Schiff” and Laboratorio di Progettazione, Sintesi e Studio di Eterocicli Bioattivi (HeteroBioLab), Università degli Studi di Firenze, Polo Scientifico e Tecnologico, Via della Lastruccia 13, I-50019 Sesto Fiorentino, Firenze, Italy

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Trabocchi, A., Scarpi, D. & Guarna, A. Structural diversity of bicyclic amino acids. Amino Acids 34, 1–24 (2008). https://doi.org/10.1007/s00726-007-0588-y

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