Porcine-like G3P[6] and G4P[6] rotavirus A strains detected from children with diarrhoea in Vietnam

  • Miho Kaneko
  • Loan Phuong Do
  • Yen Hai Doan
  • Toyoko Nakagomi
  • Punita Gauchan
  • Chantal Ama Agbemabiese
  • Anh Duc Dang
  • Osamu Nakagomi
Annotated Sequence Record
  • 27 Downloads

Abstract

Animal rotavirus A (RVA) strains can infect children and cause diarrhoea. We determined the full genome sequences of one G3P[6] strain (NT0001) and five G4P[6] strains (NT0042, NT0077, NT0205, NT0599, and NT0621) detected from children with diarrhoea in Vietnam in 2007-2008. Strain NT0001 had a genotype constellation of: G3-P[6]-I5-R1-C1-M1-A8-N1-T1-E1-H1, strain NT0042: G4-P[6]-I1-R1-C1-M1-A8-N1-T1-E1-H1, strain NT0077: G4-P[6]-I5-R1-C1-M1-A8-N1-T7-E1-H1, and strains NT0205, NT0599, and NT0621: G4-P[6]-I1-R1-C1-M1-A1-N1-T1-E1-H1. Sequence divergence data and phylogenetic analysis showed that they were different porcine RVA strains that independently and directly crossed the host species barrier to infect children.

Notes

Compliance with ethical standards

Conflict of interest

None to declare.

Ethical approval

Approved by the review boards of relevant institutions.

Supplementary material

705_2018_3836_MOESM1_ESM.pdf (542 kb)
Supplementary material 1 (PDF 541 kb)

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Copyright information

© Springer-Verlag GmbH Austria, part of Springer Nature 2018

Authors and Affiliations

  • Miho Kaneko
    • 1
  • Loan Phuong Do
    • 1
    • 2
  • Yen Hai Doan
    • 1
    • 3
  • Toyoko Nakagomi
    • 1
  • Punita Gauchan
    • 1
  • Chantal Ama Agbemabiese
    • 1
  • Anh Duc Dang
    • 2
  • Osamu Nakagomi
    • 1
  1. 1.Department of Molecular Epidemiology, Graduate School of Biomedical SciencesNagasaki UniversityNagasakiJapan
  2. 2.National Institute of Hygiene and EpidemiologyHanoiVietnam
  3. 3.Department of Virology 2National Institute of Infectious DiseasesTokyoJapan

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