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Transcriptome analysis of 1- and 3-year-old Panax notoginseng roots and functional characterization of saponin biosynthetic genes DS and CYP716A47-like

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Abstract

Main conclusion

Transcriptome analysis revealed high expression of saponin biosynthetic genes may account for highly accumulated saponins in 3-year-old Panax notoginseng roots and DS and CYP716A47 - like were functionally verified by transgenic tobacco.

Panax notoginseng is a well-known traditional medical herb that contains bioactive compounds known as saponins. Three major dammarene-type triterpene saponins including R1, Rb1, and Rg1 were found to be highly accumulated in the roots of 3-year-old plants when compared to those of 1-year-old plants. However, the underlying cellular mechanism is poorly understood. In this study, transcriptome analysis revealed that most genes involved in saponin biosynthesis in P. notoginseng roots augmented during their growth periods. The analysis of the KEGG pathway indicated that the primary metabolism, cell growth, and differentiation were less active in the roots of 3-year-old plant; however, secondary metabolisms were enhanced, thus providing molecular evidence for the harvesting of P. notoginseng roots in the 3rd year of growth. Furthermore, the functional role of DS and CYP716A47-like, two of the candidate genes involved in saponin biosynthesis isolated from P. notoginseng, were verified via overexpression in cultivated tobacco. Approximately, 0.325 µg g−1 of dammarenediol-II and 0.320 µg g−1 of protopanaxadiol were recorded in the dry leaves of transgenic tobacco overexpressed with DS and both DS and CYP716A47-like, respectively. This study provides insights into the molecular mechanisms for saponin accumulation in P. notoginseng roots during its growth period and paves a promising way to produce dammarenediol-II and protopanaxadiol via transgenic techniques.

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Abbreviations

HPLC:

High-performance liquid chromatography

MVA:

Mevalonic acid

AACT:

Acetyl-CoA acetyltransferase

HMGS:

3-Hydroxy-3-methylglutaryl coenzyme-A synthase

HMGR:

HMG-CoA reductase

MVK:

Mevalonate kinase

PMK:

Phosphomevalonate kinase

MVD:

Mevalonate diphosphate decarboxylase

IDI:

Isopentenyl diphosphate isomerase

GGPS:

Geranylgeranyl pyrophosphate synthase

FPS:

Farnesyl diphosphate synthase

SS:

Squalene synthase

SE:

Squalene epoxidase

DS:

Dammarenediol-II synthase

β-AS:

Beta-amyrin synthase

CS:

Cycloartenol synthase

CDS:

Coding sequence

DEG:

Differentially expressed genes

TFs:

Transcription factors

WT:

Wild type

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Acknowledgements

We thank Biological Technology Open Platform of Kunming Institute of Botany, the Chinese Academy of Sciences for greenhouse services. This project is supported by the Major Science and Technique Programs in Yunnan Province (No. 2016ZF001), and 100-Oversea-Top-Talents Recruitment plan of Yunnan.

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Correspondence to Jinsong Wu.

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Supplementary material 1 (PDF 112 kb)

Supplementary material 2 (XLSX 23 kb)

425_2018_3083_MOESM3_ESM.tif

Supplementary material 3 Detection of introduced genes in transgenic tobacco overexpressing DS and CYP716A47-like. a Confirmation of the introduced genes DS by real-time PCR. b Expression of DS and CYP716A47-like in leaves of wild-type Nicotiana tobacum (WT) and DS/CYP transgenic lines (the DS and CYP716A47-like co-overexpressed lines) were detected by real-time PCR. Data are mean values with the standard deviation obtained from three independent plants. Not Detected (ND) means under detection limits (TIFF 129 kb)

425_2018_3083_MOESM4_ESM.tif

Supplementary material 4 Relative transcripts of genes GUS and DS in leaves of wild-type Nicotiana tobacum (WT), empty vector transgenic line (EV) and DS transgenic line 1 (DS 1#) were detected by real-time PCR. Data are mean values with the standard deviation obtained from three independent plants. The asterisks indicate significant differences between WT and other samples (Paired t test: **P < 0.01). Not Detected (ND) means under detection limits (TIFF 41 kb)

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Li, J., Ma, L., Zhang, S. et al. Transcriptome analysis of 1- and 3-year-old Panax notoginseng roots and functional characterization of saponin biosynthetic genes DS and CYP716A47-like. Planta 249, 1229–1237 (2019). https://doi.org/10.1007/s00425-018-03083-1

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  • DOI: https://doi.org/10.1007/s00425-018-03083-1

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