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Characterization of a Novel Semi-dwarf GID1 Allele Identifies an Amino Acid Required for Its Interaction with SLR1 in Rice

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Abstract

Gibberellins (GAs) are a group of endogenous phytohormones, playing important roles in plant growth and development. GA-induced interaction between the receptor GIBBERELLIN INSENSITIVE DWARF1 (GID1) and the DELLA repressor protein SLENDER RICE1 (SLR1) is critical to release GA signaling. In this study, a semi-dwarf mutant s1-1 was isolated from the rice variety Nipponbare (Oryza sativa, japonica) by EMS treatment, which exhibited significantly reduced internodes determining a dn-type dwarf pattern. GA-response experiments showed that the target gene in s1-1 is involved in GA signaling pathway. By mapping and sequencing, a novel GID1 allele with a single amino acid substitution from proline to leucine at the 158th position was identified in s1-1. GID1P158L could only interact with SLR1 at a high concentration of GA3 (10−5 M), but not at a low concentration (0 and 10−6 M). GID1P158L may reduce the degree of the interaction between GID1 and SLR1 at a physiological concentration of GA3, thereby contributing to the dwarf phenotype of s1-1. Our studies identified an important residue of GID1 required for GID1 and SLR1 interaction and provided a new semi-dwarf rice genetic resource.

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References

  • Aleman L, Kitamura J, Abdelmageed H, Lee J, Sun Y, Nakajima M, Ueguchi-Tanaka M, Matsuoka M, Allen RD (2008) Functional analysis of cotton orthologs of GA signal transduction factors GID1 and SLR1. Plant Mol Biol 68:1–16

    Article  PubMed  CAS  Google Scholar 

  • Aya K, Ueguchi-Tanaka M, Kondo M, Hamada K, Yano K, Nishimura M, Matsuoka M (2009) Gibberellin modulates anther development in rice via the transcriptional regulation of GAMYB. Plant Cell 21:1453–1472

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Chandler PM, Harding CA, Ashton AR, Mulcair MD, Dixon NE, Mander LN (2008) Characterization of gibberellin receptor mutants of barley (Hordeum vulgare L.). Mol Plant 1:285–294

    Article  PubMed  CAS  Google Scholar 

  • Chen M, Zhao Z, Chen L, Zhou F, Zhong Z, Jiang L, Wan J (2013) Genetic analysis and fine mapping of a semi-dwarf gene in a centromeric region in rice (Oryza sativa L.). Breed Sci 63:164–168

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Davière JM, Achard P (2013) Gibberellin signaling in plants. Development 140:1147–1148

    Article  PubMed  CAS  Google Scholar 

  • Hirano K, Nakajima M, Asano K, Nishiyama T, Sakakibara H, Kojima M, Katoh E, Xiang H, Tanahashi T, Hasebe M, Banks JA, Ashikari M, Kitano H, Ueguchi-Tanaka M, Matsuoka M (2007) The GID1-mediated gibberellin perception mechanism is conserved in the lycophyte Selaginella moellendorffii but not in the bryophyte Physcomitrella patens. Plant Cell 19:3058–3079

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Hirano K, Ueguchi-Tanaka M, Matsuoka M (2008) GID1-mediated gibberellin signaling in plants. Trends Plant Sci 13:192–199

    Article  PubMed  CAS  Google Scholar 

  • Ikeda A, Ueguchi-Tanaka M, Sonoda Y, Kitano H, Koshioka M, Futsuhara Y, Matsuoka M, Yamaguchi J (2001) slender rice, a constitutive gibberellin response mutant, is caused by a null mutation of the SLR1 gene, an ortholog of the height-regulating gene GAI/RGA/RHT/D8. Plant Cell 13:999–1010

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Jiang C, Fu X (2007) GA action: turning on de-DELLA repressing signaling. Curr Opin Plant Biol 10:461–465

    Article  PubMed  CAS  Google Scholar 

  • Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2(T)(−Delta Delta C) method. Methods 25:402–408

    Article  PubMed  CAS  Google Scholar 

  • Mauriat M, Moritz T (2009) Analyses of GA20ox- and GID1-over-expressing aspen suggest that gibberellins play two distinct roles in wood formation. Plant J 58:989–1003

    Article  PubMed  CAS  Google Scholar 

  • Murase K, Hirano Y, Sun TP, Hakoshima T (2008) Gibberellin-induced DELLA recognition by the gibberellin receptor GID1. Nature 456:459–463

    Article  PubMed  CAS  Google Scholar 

  • Nakajima M, Shimada A, Takashi Y, Kim YC, Park SH, Ueguchi-Tanaka M, Suzuki H, Katoh E, Iuchi S, Kobayashi M, Maeda T, Matsuoka M, Yamaguchi I (2006) Identification and characterization of Arabidopsis gibberellin receptors. Plant J 46:880–889

    Article  PubMed  CAS  Google Scholar 

  • Sakamoto T, Miura K, Itoh H, Tatsumi T, Ueguchi-Tanaka M, Ishiyama K, Kobayashi M, Agrawal GK, Takeda S, Abe K, Miyao A, Hirochika H, Kitano H, Ashikari M, Matsuoka M (2004) An overview of gibberellin metabolism enzyme genes and their related mutants in rice. Plant Physiol 34:1642–1653

    Article  CAS  Google Scholar 

  • Sasaki A, Itoh H, Gomi K, Ueguchi-Tanaka M, Ishiyama K, Kobayashi M, Jeong DH, An G, Kitano H, Ashikari M, Matsuoka M (2003) Accumulation of phosphorylated repressor for gibberellin signaling in an F-box mutant. Science 299:1896–1898

    Article  PubMed  CAS  Google Scholar 

  • Shimada A, Ueguchitanaka M, Nakatsu T, Nakajima M, Naoe Y, Ohmiya H, Kato H, Matsuoka M (2008) Structural basis for gibberellin recognition by its receptor GID1. Nature 456:520–523

    Article  PubMed  CAS  Google Scholar 

  • Takeda K (1977) Internode elongation and dwarfism in some gramineous plants. Gamma Field Symp 16:1–18

    Google Scholar 

  • Ueguchi-Tanaka M, Fujisawa Y, Kobayashi M, Ashikari M, Iwasaki Y, Kitano H, Matsuoka M (2000) Rice dwarf mutant d1, which is defective in the alpha subunit of the heterotrimeric G protein, affects gibberellin signal transduction. Proc Natl Acad Sci USA 97:11638–11643

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  • Ueguchi-Tanaka M, Ashikari M, Nakajima M, Itoh H, Katoh E, Kobayashi M, Chow TY, Hsing YI, Kitano H, Yamaguchi I, Matsuoka M (2005) GIBBERELLIN INSENSITIVE DWARF1 encodes a soluble receptor for gibberellin. Nature 437:693–698

    Article  PubMed  CAS  Google Scholar 

  • Ueguchi-Tanaka M, Nakajima M, Katoh E, Ohmiya H, Asano K, Saji S, Hongyu X, Ashikari M, Kitano H, Yamaguchi I, Matsuoka M (2007) Molecular interactions of a soluble gibberellin receptor, GID1, with a rice DELLA protein, SLR1, and gibberellin. Plant Cell 19:2140–2155

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Wang Y, Deng D (2014) Molecular basis and evolutionary pattern of GA–GID1–DELLA regulatory module. Mol Genet Genomics 289:1–9

    Article  PubMed  CAS  Google Scholar 

  • Wang Y, Jia Z, Lu W, Deng D (2017) Gibberellin in plant height control: old player, new story. Plant Cell Rep 36:391–398

    Article  PubMed  CAS  Google Scholar 

  • Wu J, Kong X, Wan J, Liu X, Zhang X, Guo X, Zhou R, Zhao G, Jing R, Fu X, Jia J (2011) Dominant and pleiotropic effects of a GAI gene in wheat results from a lack of interaction between DELLA and GID1. Plant Physiol 157:2120–2130

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Yamamoto Y, Hirai T, Yamamoto E, Kawamura M, Sato T, Kitano H, Matsuoka M, Ueguchi-Tanaka M (2010) A rice gid1 suppressor mutant reveals that gibberellin is not always required for interaction between its receptor, GID1, and DELLA proteins. Plant Cell 22:3589–3602

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Yasumura Y, Crumpton-Taylor M, Fuentes S, Harberd NP (2007) Step-by-step acquisition of the gibberellin-DELLA growth-regulatory mechanism during land-plant evolution. Curr Biol 17:1225–1230

    Article  PubMed  CAS  Google Scholar 

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Acknowledgements

This work was supported by the Ministry of Science and Technology of China (Grant No. 2013CBA01400); the Ministry of Agriculture of China (Grant No. 2016ZX08009-003); the Chinese Academy of Agricultural Sciences (Grant No. CAAS-ASTIP-2017-ICS); and the Sichuan Academy of Agricultural Sciences (Grant No. 2016QNJJ-002). We thank Mr. Shoujiang Yuan (Shandong Rice Research Institute, China) for field management of rice plants.

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Correspondence to Baotai Guo or Xueyong Li.

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Minxia Wang and Yanling Qin have contributed equally to this work.

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Wang, M., Qin, Y., Chun, Y. et al. Characterization of a Novel Semi-dwarf GID1 Allele Identifies an Amino Acid Required for Its Interaction with SLR1 in Rice. J Plant Growth Regul 37, 840–848 (2018). https://doi.org/10.1007/s00344-018-9790-2

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