Skip to main content
Log in

Multi-wavelength analytical ultracentrifugation of human serum albumin complexed with porphyrin

  • Original Article
  • Published:
European Biophysics Journal Aims and scope Submit manuscript

Abstract

The new Beckman Coulter Optima AUC instrument, which features multi-wavelength detection that couples the hydrodynamic separation of colloidal mixtures to spectral deconvolution of interacting and non-interacting solutes present in a mixture, was used to analyze the composition of human serum albumin (HSA) bound to metallo-protoporphyrin. We present new methods implemented in UltraScan that permit Optima AUC-derived multi-wavelength data to be spectrally decomposed in the same fashion as has been made possible for the Cölfen detector earlier. We demonstrate this approach by spectrally separating sedimentation velocity experimental data from mixtures of apo-HSA and HSA complexed to different metallo-protoporphyrins. We further demonstrate how multi-wavelength AUC can accurately recover percentages of metallo-protoporphyrin-bound HSA and apo-HSA from mixtures and how multi-wavelength AUC permits the calculation of molar extinction coefficients for porphyrins bound to HSA. The presented method has broad applicability to other complex systems where mixtures of molecules with different spectral properties need to be characterized.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4

Similar content being viewed by others

References

  • Ascenzi P, Fasano M (2009) Serum heme-albumin: an allosteric protein. IUBMB Life 61(12):1118–1122

    Article  CAS  Google Scholar 

  • Ascenzi P, di Masi A, Fanali G, Fasano M (2015) Heme-based catalytic properties of human serum albumin. Cell Death Disc 1:15025

    Article  CAS  Google Scholar 

  • Brancaleon L, Magennis SW, Samuel IDW, Namdas E, Lesar A, Moseley H (2004) Characterization of the photoproducts of Protoporphyrin IX bound to human serum albumin and immunoglobulin G. Biophys Chem 109:351–360

    Article  CAS  Google Scholar 

  • Brookes E, Cao W (2010) Demeler B A two-dimensional spectrum analysis for sedimentation velocity experiments of mixtures with heterogeneity in molecular weight and shape. Eur Biophys J 39(3):405–414

    Article  Google Scholar 

  • Brookes E, Demeler B (2007) Parsimonious regularization using genetic algorithms applied to the analysis of analytical ultracentrifugation experiments. GECCO ACM Proc. 978-1-59593-697-4/07/0007

  • Cölfen H, Laue TM, Wohlleben W, Schilling K, Karabudak E, Langhorst BW, Brookes E, Dubbs B, Zollars D, Rocco M, Demeler B (2010) The Open AUC Project. Eur Biophys J 39(3):347–359. https://doi.org/10.1007/s00249-009-0438-9 (Epub 2009 Mar 19)

    Article  Google Scholar 

  • Demeler B (2010) Methods for the design and analysis of sedimentation velocity and sedimentation equilibrium experiments with proteins. Curr Protoc Prot Sci 7:7–13

    Google Scholar 

  • Demeler B, Brookes E (2008) Monte Carlo analysis of sedimentation experiments. Colloid Polym Sci 286(2):129–137

    Article  CAS  Google Scholar 

  • Demeler B, Gorbet G (2016) Analytical ultracentrifugation data analysis with UltraScan-III Ch 8. In: Uchiyama S, Stafford WF, Laue T (eds) Analytical ultracentrifugation: instrumentation, software, and applications. Springer, NewYork, pp 119–143

    Chapter  Google Scholar 

  • Demeler B, van Holde KE (2004) Sedimentation velocity analysis of highly heterogeneous systems. Anal Biochem 335(2):279–288

    Article  CAS  Google Scholar 

  • Demeler B, Nguyen TL, Gorbet GE, Schirf V, Brookes EH, Mulvaney P, El-Ballouli AO, Pan J, Bakr OM, Demeler AK, Hernandez Uribe BI, Bhattarai N, Whetten RL (2014) Characterization of size, anisotropy, and density heterogeneity of nanoparticles by sedimentation velocity. Anal Chem 86(15):7688–7695

    Article  CAS  Google Scholar 

  • Demeler B, Gorbet G, Zollars D, Dubbs B, Brookes E, Cao W. (2017) UltraScan-III version 4.0: A comprehensive data analysis software package for analytical ultracentrifugation experiments. http://www.ultrascan3.uthscsa.edu/

  • Gorbet G, Devlin T, Hernandez Uribe BI, Demeler AK, Lindsey ZL, Ganji S, Breton S, Weise-Cross L, Lafer EM, Brookes EH, Demeler B (2014) A parametrically constrained optimization method for fitting sedimentation velocity experiments. Biophys J 106(8):1741–1750

    Article  CAS  Google Scholar 

  • Gorbet GE, Pearson JZ, Demeler AK, Cölfen H, Demeler B (2015) Next-generation AUC: analysis of multiwavelength analytical ultracentrifugation data. In: James LC (ed) Methods enzymol. Academic Press, Cambridge, pp 27–47

    Google Scholar 

  • Hu J, Allen R, Rozinek S, Brancaleon L (2017) Experimental and computational characterization of photosensitized conformational effects mediated by protoporphyrin ligands on human serum albumin. Photochem Photobiol Sci 16(5):694–710

    Article  CAS  Google Scholar 

  • Hunter MJ, McDuffie FC (1959) Molecular-weight studies on human serum albumin after reduction and alkylation of sulfide bonds. J Am Chem Soc 81:4100–4109

    Article  Google Scholar 

  • Karabudak E, Brookes E, Lesnyak V, Gaponik N, Eychmüller A, Walter J, Segets D, Peukert W, Wohlleben W, Demeler B, Cölfen H (2016) Simultaneous Identification of Spectral Properties and Sizes of Multiple Particles in Solution with Subnanometer Resolution. Angew Chem Int Ed Engl 55(39):11770–11774. https://doi.org/10.1002/anie.201603844 (Epub 2016 Jul 27)

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Komatsu T, Wang R-M, Zunszain PA, Curry S, Tsuchida E (2006) Photosensitized reduction of water to hydrogen using human serum albumin complexed with zinc-protoporphyrin IX. J Am Chem Soc 128(50):16297–16301

    Article  CAS  Google Scholar 

  • Lawson CL, Hanson RJ (1974) Solving Least Squares Problems. Prentice-Hall, Inc., Englewood Cliffs

    Google Scholar 

  • Lerner AB, Barnum CP (1946) The ultraviolet absorption of plasma proteins Arch. Biochem. Biophys. 10:417–425

    CAS  Google Scholar 

  • Merlot AM, Kalinowski DS, Richardson DR (2014) Unraveling the mysteries of serum albumin—more than just a serum protein. Front Physiol. 12(5):299

    Google Scholar 

  • Pearson J, Walter J, Peukert W, Cölfen H (2017) Advanced Multiwavelength Detection in Analytical Ultracentrifugation. Anal Chem. https://doi.org/10.1021/acs.aalchem.7b04056

    Article  PubMed  PubMed Central  Google Scholar 

  • Rozinek SE, Thomas RJ, Brancaleon L (2016) Biophysical Characterization of the Interaction of Human Albumin with a Cationic Porphyrin. Biochem Biophys Rep. 7:295–302

    PubMed  PubMed Central  Google Scholar 

  • Schuck P, Demeler B (1999) Direct Sedimentation Boundary Analysis of Interference Optical Data in Analytical Ultracentrifugation. Biophys J 76:2288–2296

    Article  CAS  Google Scholar 

  • Stafford WF, Sherwood PJ (2004) Analysis of heterologous interacting systems by sedimentation velocity: curve fitting algorithms for estimation of sedimentation coefficients, equilibrium and kinetic constants. Biophys Chem 108(1–3):231–243

    Article  CAS  Google Scholar 

  • von Seggern E, Beckman-Coulter FC (2018) Personal communication

  • Walter J, Sherwood PJ, Lin W, Segets D, Stafford WF, Peukert W (2015) Simultaneous analysis of hydrodynamic and optical properties using analytical ultracentrifugation equipped with multiwavelength detection. Anal Chem 87(6):3396–3403. https://doi.org/10.1021/ac504649c (Epub 2015 Mar 3)

    Article  CAS  Google Scholar 

  • Zhang J, Pearson JZ, Gorbet GE, Cölfen H, Germann MW, Brinton MA, Demeler B (2017) Spectral and hydrodynamic analysis of West Nile virus rNA-protein interactions by multiwavelength sedimentation velocity in the analytical ultracentrifuge. Anal Chem 89(1):862–870. https://doi.org/10.1021/acs.analchem.6b03926 (Epub 2016 Dec 15)

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgements

This work was supported by NIH grant GM120600 and NSF Grant NSF-ACI-1339649 (to BD). Supercomputer calculations were performed on Comet at the San Diego Supercomputing Center (support through NSF/XSEDE Grant TG-MCB070039N to BD) and on Lonestar-5 at the Texas Advanced Computing Center (supported through UT grant TG457201 to BD). We thank Beckman Coulter for providing an Optima AUC instrument to conduct these studies, and Eric von Seggern (Beckman Coulter) for helpful discussions to facilitate these experiments.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Borries Demeler.

Additional information

Special Issue: 23rd International AUC Workshop and Symposium.

Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary material 1 (PDF 1287 kb)

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Johnson, C.N., Gorbet, G.E., Ramsower, H. et al. Multi-wavelength analytical ultracentrifugation of human serum albumin complexed with porphyrin. Eur Biophys J 47, 789–797 (2018). https://doi.org/10.1007/s00249-018-1301-7

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00249-018-1301-7

Keywords

Navigation