Skip to main content

Advertisement

Log in

Home-Field Advantage in Wood Decomposition Is Mainly Mediated by Fungal Community Shifts at “Home” Versus “Away”

  • Soil Microbiology
  • Published:
Microbial Ecology Aims and scope Submit manuscript

Abstract

The home-field advantage (HFA) hypothesis has been used intensively to study leaf litter decomposition in various ecosystems. However, the HFA in woody substrates is still unexplored. Here, we reanalyzed and integrated existing datasets on various groups of microorganisms collected from natural deadwood of two temperate trees, Fagus sylvatica and Picea abies, from forests in which one or other of these species dominates but where both are present. Our aims were (i) to test the HFA hypothesis on wood decomposition rates of these two temperate tree species, and (ii) to investigate if HFA hypothesis can be explained by diversity and community composition of bacteria and in detail N-fixing bacteria (as determined by molecular 16S rRNA and nifH gene amplification) and fungi (as determined by molecular ITS rRNA amplification and sporocarp surveys). Our results showed that wood decomposition rates were accelerated at “home” versus “away” by 38.19% ± 20.04% (mean ± SE). We detected strong changes in fungal richness (increase 36–50%) and community composition (RANOSIM = 0.52–0.60, P < 0.05) according to HFA hypothesis. The changes of fungi were much stronger than for total bacteria and nitrogen fixing for both at richness and community composition levels. In conclusion, our results support the HFA hypothesis in deadwood: decomposition rate is accelerated at home due to specialization of fungal communities produced by the plant community above them. Furthermore, the higher richness of fungal sporocarps and nitrogen-fixing bacteria (nifH) may stimulate or at least stabilize wood decomposition rates at “home” versus “away.”

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5

Similar content being viewed by others

References

  1. Purahong W, Arnstadt T, Kahl T et al (2016) Are correlations between deadwood fungal community structure, wood physico-chemical properties and lignin-modifying enzymes stable across different geographical regions? Fungal Ecol. 22:98–105. https://doi.org/10.1016/j.funeco.2016.01.002

    Article  Google Scholar 

  2. Rajala T, Peltoniemi M, Pennanen T, Mäkipää R (2012) Fungal community dynamics in relation to substrate quality of decaying Norway spruce (Picea abies [L.] Karst.) logs in boreal forests. FEMS Microbiol. Ecol. 81:494–505. https://doi.org/10.1111/j.1574-6941.2012.01376.x

    Article  CAS  PubMed  Google Scholar 

  3. Arnstadt T, Hoppe B, Kahl T et al (2016) Patterns of laccase and peroxidases in coarse woody debris of Fagus sylvatica, Picea abies and Pinus sylvestris and their relation to different wood parameters. Eur. J. For. Res. 135:109–124. https://doi.org/10.1007/s10342-015-0920-0

    Article  CAS  Google Scholar 

  4. Hoppe B, Kahl T, Karasch P et al (2014) Network analysis reveals ecological links between N-fixing bacteria and wood-decaying fungi. PLoS One 9:e88141. https://doi.org/10.1371/journal.pone.0088141

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  5. Hoppe B, Krger K, Kahl T et al (2015) A pyrosequencing insight into sprawling bacterial diversity and community dynamics in decaying deadwood logs of Fagus sylvatica and Picea abies. Sci. Rep. 5(9456). https://doi.org/10.1038/srep09456

  6. Mäkipää R, Leppänen SM, Sanz Munoz S et al (2018) Methanotrophs are core members of the diazotroph community in decaying Norway spruce logs. Soil Biol. Biochem. 120:230–232. https://doi.org/10.1016/j.soilbio.2018.02.012

    Article  CAS  Google Scholar 

  7. Gaby JC, Buckley DH (2014) A comprehensive aligned nifH gene database: a multipurpose tool for studies of nitrogen-fixing bacteria. Database J Biol Databases Curation 2014. https://doi.org/10.1093/database/bau001

  8. Gaby JC, Buckley DH (2011) A global census of nitrogenase diversity. Environ. Microbiol. 13:1790–1799. https://doi.org/10.1111/j.1462-2920.2011.02488.x

    Article  CAS  PubMed  Google Scholar 

  9. Cornelissen JHC, Sass-Klaassen U, Poorter L et al (2012) Controls on coarse wood decay in temperate tree species: birth of the LOGLIFE experiment. Ambio 41:231–245. https://doi.org/10.1007/s13280-012-0304-3

    Article  PubMed  PubMed Central  Google Scholar 

  10. Hoppe B, Purahong W, Wubet T et al (2016) Linking molecular deadwood-inhabiting fungal diversity and community dynamics to ecosystem functions and processes in Central European forests. Fungal Divers. 77:367–379. https://doi.org/10.1007/s13225-015-0341-x

    Article  Google Scholar 

  11. Binkley D, Giardina C (1998) Why do tree species affect soils? The warp and woof of tree-soil interactions. Biogeochemistry 42:89–106

    Article  Google Scholar 

  12. Ushio M, Kitayama K, Balser TC (2010) Tree species effects on soil enzyme activities through effects on soil physicochemical and microbial properties in a tropical montane forest on Mt. Kinabalu, Borneo. Pedobiologia 53:227–233. https://doi.org/10.1016/j.pedobi.2009.12.003

    Article  CAS  Google Scholar 

  13. Lamit LJ, Busby PE, Lau MK et al (2015) Tree genotype mediates covariance among communities from microbes to lichens and arthropods. J. Ecol. 103:840–850. https://doi.org/10.1111/1365-2745.12416

    Article  Google Scholar 

  14. Purahong W, Durka W, Fischer M et al (2016) Tree species, tree genotypes and tree genotypic diversity levels affect microbe-mediated soil ecosystem functions in a subtropical forest. Sci. Rep. 6(36672). https://doi.org/10.1038/srep36672

  15. Veen GF (Ciska), Freschet GT, Ordonez A, Wardle DA (2015) Litter quality and environmental controls of home-field advantage effects on litter decomposition. Oikos 124:187–195. https://doi.org/10.1111/oik.01374

  16. Ayres E, Steltzer H, Simmons BL et al (2009) Home-field advantage accelerates leaf litter decomposition in forests. Soil Biol. Biochem. 41:606–610. https://doi.org/10.1016/j.soilbio.2008.12.022

    Article  CAS  Google Scholar 

  17. Li Y-B, Li Q, Yang J-J et al (2017) Home-field advantages of litter decomposition increase with increasing N deposition rates: a litter and soil perspective. Funct. Ecol. 31:1792–1801. https://doi.org/10.1111/1365-2435.12863

    Article  CAS  Google Scholar 

  18. Veen GF, Sundqvist MK, Wardle DA (2015) Environmental factors and traits that drive plant litter decomposition do not determine home-field advantage effects. Funct Ecol 29:981–991. https://doi.org/10.1111/1365-2435.12421

    Article  Google Scholar 

  19. Purahong W, Wubet T, Lentendu G et al (2016) Life in leaf litter: novel insights into community dynamics of bacteria and fungi during litter decomposition. Mol. Ecol. https://doi.org/10.1111/mec.13739

  20. Purahong W, Stempfhuber B, Lentendu G et al (2015) Influence of commonly used primer systems on automated ribosomal intergenic spacer analysis of bacterial communities in environmental samples. PLoS One 10:e0118967. https://doi.org/10.1371/journal.pone.0118967

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  21. Grove SJ (2002) Saproxylic insect ecology and the sustainable management of forests. Annu. Rev. Ecol. Syst. 33:1–23. https://doi.org/10.1146/annurev.ecolsys.33.010802.150507

    Article  Google Scholar 

  22. Müller J, Bütler R (2010) A review of habitat thresholds for dead wood: a baseline for management recommendations in European forests. Eur. J. For. Res. 129:981–992. https://doi.org/10.1007/s10342-010-0400-5

    Article  Google Scholar 

  23. Purahong W, Hoppe B, Kahl T et al (2014) Changes within a single land-use category alter microbial diversity and community structure: molecular evidence from wood-inhabiting fungi in forest ecosystems. J. Environ. Manag. 139:109–119. https://doi.org/10.1016/j.jenvman.2014.02.031

    Article  CAS  Google Scholar 

  24. Bässler C, Ernst R, Cadotte M, Heibl C, Müller J (2014) Near-to-nature logging influences fungal community assembly processes in a temperate forest. J. Appl. Ecol. 51:939–948. https://doi.org/10.1111/1365-2664.12267

    Article  Google Scholar 

  25. Fischer M, Bossdorf O, Gockel S et al (2010) Implementing large-scale and long-term functional biodiversity research: the Biodiversity Exploratories. Basic Appl Ecol 11:473–485. https://doi.org/10.1016/j.baae.2010.07.009

    Article  Google Scholar 

  26. Luyssaert S, Hessenmöller D, von Lüpke N et al (2011) Quantifying land use and disturbance intensity in forestry, based on the self-thinning relationship. Ecol. Appl. 21:3272–3284. https://doi.org/10.1890/10-2395.1

    Article  Google Scholar 

  27. Hessenmöller D, Nieschulze J, Von Lüpke N, Schulze E-D (2011) Identification of forest management types from ground-based and remotely sensed variables and the effects of forest management on forest structure and composition. Forstarchiv 82:171–183. https://doi.org/10.4432/0300-4112-82-171

  28. Müller-Using S, Bartsch N (2009) Decay dynamic of coarse and fine woody debris of a beech (Fagus sylvatica L.) forest in Central Germany. Eur. J. For. Res. 128:287–296. https://doi.org/10.1007/s10342-009-0264-8

    Article  Google Scholar 

  29. Urbanová M, Šnajdr J, Baldrian P (2015) Composition of fungal and bacterial communities in forest litter and soil is largely determined by dominant trees. Soil Biol. Biochem. 84:53–64. https://doi.org/10.1016/j.soilbio.2015.02.011

    Article  CAS  Google Scholar 

  30. Jacob M, Viedenz K, Polle A, Thomas FM (2010) Leaf litter decomposition in temperate deciduous forest stands with a decreasing fraction of beech (Fagus sylvatica). Oecologia 164:1083–1094. https://doi.org/10.1007/s00442-010-1699-9

    Article  PubMed  PubMed Central  Google Scholar 

  31. Konôpka B, Pajtík J, Noguchi K, Lukac M (2013) Replacing Norway spruce with European beech: a comparison of biomass and net primary production patterns in young stands. For. Ecol. Manag. 302:185–192. https://doi.org/10.1016/j.foreco.2013.03.026

    Article  Google Scholar 

  32. Ammer C, Bickel E, Kölling C (2008) Converting Norway spruce stands with beech - a review of arguments and techniques. Austrian J For Sci 125:3–26

    Google Scholar 

  33. Purahong W, Kahl T, Schloter M et al (2014) Comparing fungal richness and community composition in coarse woody debris in Central European beech forests under three types of management. Mycol. Prog. 13:959–964. https://doi.org/10.1007/s11557-013-0954-y

    Article  Google Scholar 

  34. Edgar RC, Haas BJ, Clemente JC et al (2011) UCHIME improves sensitivity and speed of chimera detection. Bioinforma Oxf Engl 27:2194–2200. https://doi.org/10.1093/bioinformatics/btr381

    Article  CAS  Google Scholar 

  35. Kahl T, Mund M, Bauhus J, Schulze E-D (2012) Dissolved organic carbon from European beech logs: patterns of input to and retention by surface soil. Ecoscience 19:364–373. https://doi.org/10.2980/19-4-3501

    Article  Google Scholar 

  36. Amend AS, Seifert KA, Bruns TD (2010) Quantifying microbial communities with 454 pyrosequencing: does read abundance count? Mol. Ecol. 19:5555–5565. https://doi.org/10.1111/j.1365-294X.2010.04898.x

    Article  CAS  PubMed  Google Scholar 

  37. Purahong W, Wubet T, Krüger D, Buscot F (2018) Molecular evidence strongly supports deadwood-inhabiting fungi exhibiting unexpected tree species preferences in temperate forests. ISME J 12:289–295. https://doi.org/10.1038/ismej.2017.177

    Article  Google Scholar 

  38. Purahong W, Wubet T, Kahl T et al (2018) Increasing N deposition impacts neither diversity nor functions of deadwood-inhabiting fungal communities, but adaptation and functional redundancy ensure ecosystem function. Environ. Microbiol. 20:1693–1710. https://doi.org/10.1111/1462-2920.14081

    Article  CAS  PubMed  Google Scholar 

  39. Hammer Ø, Harper DAT, Ryan PD (2001) PAST: paleontological statistics software package for education and data analysis. Palaeontol. Electron. 4:9

    Google Scholar 

  40. Goldmann K, Schöning I, Buscot F, Wubet T (2015) Forest management type influences diversity and community composition of soil fungi across temperate forest ecosystems. Front. Microbiol. 6. https://doi.org/10.3389/fmicb.2015.01300

  41. Greaves H (1971) The bacterial factor in wood decay. Wood Sci. Technol. 5:6–16. https://doi.org/10.1007/BF00363116

    Article  Google Scholar 

  42. Kielak AM, Scheublin TR, Mendes LW et al (2016) Bacterial community succession in pine-wood decomposition. Terr Microbiol 231. https://doi.org/10.3389/fmicb.2016.00231

  43. Austin AT, Vivanco L, González-Arzac A, Pérez LI (2014) There’s no place like home? An exploration of the mechanisms behind plant litter–decomposer affinity in terrestrial ecosystems. New Phytol. 204:307–314. https://doi.org/10.1111/nph.12959

    Article  Google Scholar 

  44. Freschet GT, Aerts R, Cornelissen JHC (2012) Multiple mechanisms for trait effects on litter decomposition: moving beyond home-field advantage with a new hypothesis. J. Ecol. 100:619–630. https://doi.org/10.1111/j.1365-2745.2011.01943.x

    Article  Google Scholar 

  45. Purahong W, Kapturska D, Pecyna MJ et al (2014) Influence of different forest system management practices on leaf litter decomposition rates, nutrient dynamics and the activity of ligninolytic enzymes: a case study from Central European forests. PLoS One 9:e93700. https://doi.org/10.1371/journal.pone.0093700

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  46. Vivanco L, Austin AT (2008) Tree species identity alters forest litter decomposition through long-term plant and soil interactions in Patagonia, Argentina. J. Ecol. 96:727–736. https://doi.org/10.1111/j.1365-2745.2008.01393.x

    Article  CAS  Google Scholar 

  47. Fukasawa Y, Osono T, Takeda H (2009) Effects of attack of saprobic fungi on twig litter decomposition by endophytic fungi. Ecol. Res. 24:1067–1073. https://doi.org/10.1007/s11284-009-0582-9

    Article  Google Scholar 

  48. Kuuskeri J, Mäkelä MR, Isotalo J et al (2015) Lignocellulose-converting enzyme activity profiles correlate with molecular systematics and phylogeny grouping in the incoherent genus Phlebia (Polyporales, Basidiomycota). BMC Microbiol. 15:217. https://doi.org/10.1186/s12866-015-0538-x

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  49. Kinnunen A, Maijala P, Järvinen P, Hatakka A (2017) Improved efficiency in screening for lignin-modifying peroxidases and laccases of basidiomycetes. Curr Biotechnol 6:105–115

    Article  CAS  Google Scholar 

  50. Vrsanska M, Voberkova S, Langer V et al (2016) Induction of laccase, lignin peroxidase and manganese peroxidase activities in white-rot fungi using copper complexes. Molecules 21:1553. https://doi.org/10.3390/molecules21111553

    Article  CAS  PubMed Central  Google Scholar 

  51. Rayner ADM, Boddy L (1988) Fungal decomposition of wood: its biology and ecology. John Wiley & Sons Ltd., Chichester, Sussex, United Kingdom

  52. Song Z, Kennedy PG, Liew FJ, Schilling JS (2017) Fungal endophytes as priority colonizers initiating wood decomposition. Funct. Ecol. 31:407–418. https://doi.org/10.1111/1365-2435.12735

    Article  Google Scholar 

  53. Parfitt D, Hunt J, Dockrell D et al (2010) Do all trees carry the seeds of their own destruction? PCR reveals numerous wood decay fungi latently present in sapwood of a wide range of angiosperm trees. Fungal Ecol. 3:338–346. https://doi.org/10.1016/j.funeco.2010.02.001

    Article  Google Scholar 

  54. Hallenberg N, Kúffer N (2001) Long-distance spore dispersal in wood-inhabiting Basidiomycetes. Nord. J. Bot. 21:431–436. https://doi.org/10.1111/j.1756-1051.2001.tb00793.x

    Article  Google Scholar 

  55. Dobbs CG (1942) On the primary dispersal and isolation of fungal spores. New Phytol. 41:63–69. https://doi.org/10.1111/j.1469-8137.1942.tb07060.x

    Article  Google Scholar 

  56. Andrade D, Pan Z, Dannevik W, Zidek J (2009) Modeling soybean rust spore escape from infected canopies: model description and preliminary results. J. Appl. Meteorol. Climatol. 48:789–803. https://doi.org/10.1175/2008JAMC1917.1

    Article  Google Scholar 

  57. Edman M, Gustafsson M, Stenlid J et al (2004) Spore deposition of wood-decaying fungi: importance of landscape composition. Ecography 27:103–111. https://doi.org/10.1111/j.0906-7590.2004.03671.x

    Article  Google Scholar 

  58. Konôpka B, Pajtík J, Marušák R et al (2016) Specific leaf area and leaf area index in developing stands of Fagus sylvatica L. and Picea abies Karst. For. Ecol. Manag. 364:52–59. https://doi.org/10.1016/j.foreco.2015.12.005

    Article  Google Scholar 

  59. Floren A, Krüger D, Müller T et al (2015) Diversity and interactions of wood-inhabiting fungi and beetles after deadwood enrichment. PLoS One 10:e0143566. https://doi.org/10.1371/journal.pone.0143566

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  60. Valentín L, Rajala T, Peltoniemi M et al (2014) Loss of diversity in wood-inhabiting fungal communities affects decomposition activity in Norway spruce wood. Terr Microbiol 5(230). https://doi.org/10.3389/fmicb.2014.00230

  61. Yang Y, Schaefer DA, Liu W, et al (2016) Higher fungal diversity in dead wood is correlated with lower CO2 emissions in a natural forest. bioRxiv 51235. https://doi.org/10.1101/051235

  62. Weißhaupt P, Pritzkow W, Noll M (2011) Nitrogen metabolism of wood decomposing basidiomycetes and their interaction with diazotrophs as revealed by IRMS. Int. J. Mass Spectrom. 307:225–231. https://doi.org/10.1016/j.ijms.2010.12.011

    Article  CAS  Google Scholar 

Download references

Acknowledgements

We thank the managers of the three Exploratories, Swen Renner, Sonja Gockel, and Andreas Hemp, and all former managers for their work in maintaining the plot and project infrastructure; Simone Pfeffer, Maren Gleisberg, and Christiane Fischer, and all members at BEO for giving support through the central office; Jens Nieschulze for managing the central data base; and Markus Fischer, Eduard Linsenmair, Dominik Hessenmöller, Daniel Prati, Ingo Schöning, François Buscot, Ernst-Detlef Schulze, Wolfgang W. Weisser, and the late Elisabeth Kalko for their role in setting up the Biodiversity Exploratories project.

Availability of Data and Material

The dataset analyzed during this study are included in this manuscript as Supplementary material files. The raw sequence data for the ITS and 16S pyrosequencing datasets are available from the NCBI Sequence Read Archive (http://www.ncbi.nlm.nih.gov/Traces/study/) under experiments SRX589508 and SRX589509, respectively. New nifH nucleotide sequences and their MOTU (molecular operational taxonomic unit) assignments are available under accession numbers HF559482-HF560561.

Funding

The work has been (partly) funded by the DFG Priority Program 1374 “Infrastructure-Biodiversity-Exploratories” (KR 3587/1-1, KR 3587/3-2, BU 941/17-1).

Author information

Authors and Affiliations

Authors

Contributions

WP conceived the ideas. TK, DK, and BH collected the data. WP, BH, and FB designed methodology. WP and BH analyzed data; WP and BH led the writing of the manuscript with substantial contributions of all co-authors.

Corresponding authors

Correspondence to Witoon Purahong or Björn Hoppe.

Ethics declarations

Ethics Statement

Field work permits were issued by the responsible state environmental offices of Baden-Württemberg, Thüringen, and Brandenburg (according to § 72 BbgNatSchG).

Consent for Publication

The manuscript does not contain any individual person’s data in any form. The image contained in this manuscript was generated by the authors.

Competing Interests

The authors declare that they have no competing interests.

Electronic supplementary material

ESM 1

(PDF 381 kb)

ESM 2

(XLSX 50 kb)

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Purahong, W., Kahl, T., Krüger, D. et al. Home-Field Advantage in Wood Decomposition Is Mainly Mediated by Fungal Community Shifts at “Home” Versus “Away”. Microb Ecol 78, 725–736 (2019). https://doi.org/10.1007/s00248-019-01334-6

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00248-019-01334-6

Keywords

Navigation