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Comprehensive phenotypic analysis and quantitative trait locus identification for grain mineral concentration, content, and yield in maize (Zea mays L.)

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Abstract

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Understanding the correlations of seven minerals for concentration, content and yield in maize grain, and exploring their genetic basis will help breeders to develop high grain quality maize.

Abstract

Biofortification by enhanced mineral accumulation in grain through genetic improvement is an efficient way to solve global nutrient malnutrition, in which one key step is to detect the underlying quantitative trait loci (QTL). Herein, a maize recombinant inbred population (RIL) was field grown to maturity across four environments (two locations × two years). Phenotypic data for grain mineral concentration, content and yield were determined for copper (Cu), iron (Fe), manganese (Mn), zinc (Zn), magnesium (Mg), potassium (K) and phosphorus (P). Significant effects of genotype, location and year were observed for all investigated traits. The strongest location effects were found for Zn accumulation traits probably due to distinct soil Zn availabilities across locations. Heritability (H 2) of different traits varied with higher H 2 (72–85 %) for mineral concentration and content, and lower (48–63 %) for mineral yield. Significant positive correlations for grain concentration were revealed between several minerals. QTL analysis revealed 28, 25, and 12 QTL for mineral concentration, content and yield, respectively; and identified 8 stable QTL across at least two environments. All these QTL were assigned into 12 distinct QTL clusters. A cluster at chromosome Bin 6.07/6.08 contained 6 QTL for kernel weight, mineral concentration (Mg) and content (Zn, K, Mg, P). Another cluster at Bin 4.05/4.06 contained a stable QTL for Mn concentration, which were previously identified in other maize and rice RIL populations. These results highlighted the phenotypic and genetic performance of grain mineral accumulation, and revealed two promising chromosomal regions for genetic improvement of grain biofortification in maize.

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References

  • Abiola O, Angel JM, Avner P, Bachmanov AA, Belknap JK et al (2003) The nature and identification of quantitative trait loci: a community’s view. Nat Rev Genet 4:911–916

    PubMed  Google Scholar 

  • Anandan A, Rajiv G, Eswaran R, Prakash M (2011) Genotypic variation and relationships between quality traits and trace elements in traditional and improved rice (Oryza sativa L.) genotypes. J Food Sci 76:122–130

    Article  Google Scholar 

  • Antunović M, Kovačević V, Rastija M, Zdunić Z (2003) Influences of soil and genotypes on micronutrient status in maize plants. Agriculture 9:9–14

    Google Scholar 

  • Baxter IR (2009) Ionomics: studying the social network of mineral nutrients. CurrOpin Plant Biol 12:381–386

    CAS  Google Scholar 

  • Baxter I, Dilkes BP (2012) Elemental profiles reflect plant adaptations to the environment. Science 336:1661–1663

    Article  CAS  PubMed  Google Scholar 

  • Baxter IR, Hermans C, Lahner B, Yakubova E, Tikhonova M et al (2012) Biodiversity of mineral nutrient and trace element accumulation in Arabidopsis thaliana. PLoS One 7:e35121

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Baxter IR, Gustin JL, Settles AM, Hoekenga OA (2013) Ionomic characterization of maize kernels in the intermated B73 × Mo17 population. Crop Sci 53:208–220

    Article  CAS  Google Scholar 

  • Baxter IR, Ziegler G, Lahner B, Mickelbart MV, Foley R et al (2014) Single-kernel ionomic profiles are highly heritable indicators of genetic and environmental influences on elemental accumulation in maize grain (Zea may). PLoS One 9:e87628

    Article  PubMed Central  PubMed  Google Scholar 

  • Bouis HE, Welch RM (2010) Biofortification—a sustainable agricultural strategy for reducing micronutrient malnutrition in the global south. Crop Sci 50:S20–S32

    Article  Google Scholar 

  • Bremner JM (1996) Nitrogen-total. In: Sparks DL (ed) Methods of soil analysis. Part 3. Chemical methods. SSSA Book Ser. 5. SSSA and ASA, Madison, pp 1085–1121

  • Buescher E, Achberger T, Amusan I, Giannini A, Ochsenfeld C et al (2010) Natural genetic variation in selected populations of Arabidopsis thaliana is associated with ionomic differences. PLoS One 5:e11081

    Article  PubMed Central  PubMed  Google Scholar 

  • Cakmak I (2002) Plant nutrition research: priorities to meet human needs for food in sustainable ways. Plant Soil 247:3–24

    Article  CAS  Google Scholar 

  • Cakmak I, Pfeiffer WH, Mcclafferty B (2010) Biofortification of durum wheat with zinc and iron. Cereal Chem 87:10–20

    Article  CAS  Google Scholar 

  • Chahal DS, Sharma BD, Singh PK (2005) Distribution of forms of zinc and their association with soil properties and uptake in different soil orders in semi-arid soils of Punjab, India. Commun Soil Sci Plant Anal 36:2857–2874

    Article  CAS  Google Scholar 

  • Churchill GA, Doerge RW (1994) Empirical threshold values for quantitative trait mapping. Genetics 138:963–971

    PubMed Central  CAS  PubMed  Google Scholar 

  • Fan MS, Zhao FJ, Fairweather-Taitc SJ et al (2008) Evidence of decreasing mineral density in wheat grain over the last 160 years. J Trace Elem Med Biol 22:315–324

    Article  CAS  PubMed  Google Scholar 

  • Garcia-Oliveira AL, Tan LB, Fu YC, Sun CQ (2009) Genetic identification of quantitative trait loci for contents of mineral nutrients in rice grain. J Integr Plant Biol 51:84–92

    Article  CAS  PubMed  Google Scholar 

  • Goto F, Yoshihara T, Toki S, Shigemoto N, Takaiwa F (1999) Iron fortification of rice seed by the soybean ferritin gene. Nat Biotech 17:282–286

    Article  CAS  Google Scholar 

  • Gregorio GB, Senadhira D, Htut H, Graham RD (2000) Breeding for trace mineral density in rice. Food Nutr Bull 21:382–386

    Google Scholar 

  • House WA (1999) Trace element bioavailability as exampled by iron and zinc. Field Crops Res 60:115–141

    Article  Google Scholar 

  • Imtiaz M, Alloway BJ, Shah KH, Siddiqui SH, Memon MY, Aslam M, Khan P (2003) Zinc nutrition of wheat: growth and zinc uptake. Asian J Plant Sci 2:152–155

    Article  Google Scholar 

  • Kumar R, Bohra JS (2014) Effect of NPKS and Zn application on growth, yield, economics and quality of baby corn. Arch Agron Soil Sci 60:1193–1206

    Article  CAS  Google Scholar 

  • Kumar R, Mehrotra NK, Nautiyal BD, Kumar P, Singh PK (2009) Effect of copper on growth, yield and concentration of Fe, Mn, Zn and Cu in wheat plants (Triticum aestivum L.). J Environ Biol 30:485–488

    CAS  PubMed  Google Scholar 

  • Lindsay WL, Norvell WA (1978) Development of a DTPA soil test for zinc, iron, manganese and copper. Soil Sci Soc Am J 42:421–428

    Article  CAS  Google Scholar 

  • Liu J, Cai H, Chu Q, Chen X, Chen F, Yuan L, Mi G, Zhang F (2011) Genetic analysis of vertical root pulling resistance (VRPR) in maize using two genetic populations. Mol Breeding 28:463–474

    Article  Google Scholar 

  • Lung’aho MG, Mwaniki AM, Szalma SJ, Hart JJ, Rutzke MA, Kochian LV, Glahn RP, Hoekenga OA (2011) Genetic and physiological analysis of iron biofortification in maize kernels. PLoS One 6:e20429

    Article  PubMed Central  PubMed  Google Scholar 

  • Mayer JE, Pfeiffer WH, Bouis P (2008) Biofortified crops to alleviate micronutrient malnutrition. Curr Opin Plant Biol 11:166–170

    Article  CAS  PubMed  Google Scholar 

  • McDowell SC, Akmakjian G, Sladek C, Mendoza-Cozatl D, Morrissey JB et al (2013) Elemental concentrations in the seed of mutants and natural variants of Arabidopsis thaliana grown under varying soil conditions. PLoS One 8:e63014

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Nyquist WE (1991) Estimation of heritability and prediction of selection response in plant populations. Crit Rev Plant Sci 10:235–322

    Article  Google Scholar 

  • Olsen SR, Cole CV, Watanabe FS, Dean LA (1954) Estimation of available phosphorus in soils by extraction with sodium bicarbonate. Circular 939, United States Department of Agriculture, Washington

  • Pacini C, Wossink A, Giesen G, Vazzana C, Huirne R (2003) Evaluation of sustainability of organic, integrated and conventional faming systems: a farm and field-scale analysis. Agric Ecosys Environ 95:273–288

    Article  Google Scholar 

  • Pfeiffer WH, McClafferty B (2007) HarvestPlus: breeding crops for better nutrition. Crop Sci 47:S88–105

    Article  Google Scholar 

  • Philip JW, Martin RB (2005) Biofortifying crops with essential mineral elements. Trends Plant Sci 10:586–593

    Article  Google Scholar 

  • Pillen K, Zacharias A, Léon J (2003) Advanced backcross QTL analysis in barley (Hordeum vulgare L.). Theor Appl Genet 107:340–352

    Article  CAS  PubMed  Google Scholar 

  • Qin HN, Cai LY, Liu ZZ, Wang GQ, Wang JG, Guo Y, Wang H (2012) Identification of QTL for zinc and iron concentration in maize kernel and cob. Euphytica 187:345–358

    Article  CAS  Google Scholar 

  • Schnable PS, Ware D, Fulton RS, Stein JC, Wei F et al (2009) The B73 maize genome: complexity, diversity, and dynamics. Science 326:1112–1115

    Article  CAS  PubMed  Google Scholar 

  • Sharma BL, Bapat PN (2000) Levels of micronutrient cations in various parts of wheat and influenced by zinc and phosphorus application. J Indian Soc Soil Sci 48:130–134

    CAS  Google Scholar 

  • Šimic D, Sudar R, Ledencan T, Jambrovic A, Zdunic Z, Brkic I, Kovacevic V (2009) Genetic variation of bioavailable iron and zinc in grain of a maize population. J Cereal Sci 50:392–397

    Article  Google Scholar 

  • Šimic D, Drinic SM, Zdunic Z, Jambrovic A, Ledencan T, Brkic J, Brkic A, Brkic I (2012) Quantitative trait loci for biofortification traits in maize grain. J Hered 103:47–54

    Article  PubMed  Google Scholar 

  • Wang TL, Domoney C, Hedley CL, Casey R, Grusak MA (2003) Can we improve the nutritional quality of legume seeds? Plant Phys 131:886–891

    Article  CAS  Google Scholar 

  • Wang S, Basten CJ, Zeng ZB (2012) Windows QTL Cartographer 2.5. Department of Statistics, North Carolina State University, Raleigh, NC

  • White PJ, Broadley MR (2009) Biofortification of crops with seven mineral elements often lacking in human diets—iron, zinc, copper, calcium, magnesium, selenium and iodine. New Phytol 182:49–84

    Article  CAS  PubMed  Google Scholar 

  • Xue Y, Yue S, Zhang W, Liu D, Cui Z et al (2014) Zinc, iron, manganese and copper uptake requirement in response to nitrogen supply and the increased grain yield of summer maize. PLoS One 9:e93895

    Article  PubMed Central  PubMed  Google Scholar 

  • Zeng ZB (1994) Precision mapping of quantitative trait loci. Genetics 136:1457–1468

    PubMed Central  CAS  PubMed  Google Scholar 

  • Zhang M, Pinson SRM, Tarpley L, Huang XY, Lahner B, Yakubova E, Baxter I, Guerinot ML, Salt DE (2014) Mapping and validation of quantitative trait loci associated with concentrations of 16 elements in unmilled rice grain. Theor Appl Genet 127:137–165

    Article  CAS  PubMed  Google Scholar 

  • Zhou JF, Huang YQ, Liu ZZ, Chen JT, Zhu LY, Song ZQ, Zhao YF (2010) Genetic analysis and QTL mapping of zinc, iron, copper and manganese contents in maize seed. J Plant Genet Resour 11:593–595

    CAS  Google Scholar 

Download references

Acknowledgments

This study was supported by the Ministry of Science and Technology of China (2012AA100306, 2011CB100305); National Natural Science Foundation of China (31421092); the Ministry of Agriculture of China (2014ZX08003-005); Danish Strategic Research Council (NUTRIEFFICIENT 10-093498) and Chinese Universities Scientific Fund (2015ZH001).

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The authors declare that no conflict of interest exists.

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Correspondence to Lixing Yuan.

Additional information

Communicated by M. Gore.

R. Gu and F. Chen contributed equally to this work.

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Gu, R., Chen, F., Liu, B. et al. Comprehensive phenotypic analysis and quantitative trait locus identification for grain mineral concentration, content, and yield in maize (Zea mays L.). Theor Appl Genet 128, 1777–1789 (2015). https://doi.org/10.1007/s00122-015-2546-5

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  • DOI: https://doi.org/10.1007/s00122-015-2546-5

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