Skip to main content
Log in

DeerAnalysis2006—a comprehensive software package for analyzing pulsed ELDOR data

  • Published:
Applied Magnetic Resonance Aims and scope Submit manuscript

Abstract

Pulsed electron-electron double resonance techniques such as the four-pulse double electron-electron resonance experiment measure a dipolar evolution function of the sample. For a sample consisting of spin-carrying nanoobjects, this function is the product of a form factor, corresponding to the internal structure of the nanoobject, and a background factor, corresponding to the distribution of nanoobjects in space. The form factor contains information on the spin-to-spin distance distribution within the nanoobject and on the average number of spins per nanoobject, while the background factor depends on constraints, such as a confinement of the nanoobjects to a two-dimensional layer. Separation of the dipolar evolution function into these two contributions and extraction of the spin-to-spin distance distribution require numerically stable mathematical algorithms that can handle data for different classes of samples, e.g., spin-labelled biomacromolecules and synthetic materials. Furthermore, experimental imperfections such as the limited excitation bandwidth of microwave pulses need to be considered. The software package DeerAnalysis2006 provides access to a comprehensive set of tools for such data analysis within a common user interface. This interface allows for several tests of the reliability and precision of the extracted information. User-supplied models for the spin-to-spin distance distribution within a certain class of nanoobjects can be added to an existing library and be fitted with a universal algorithm.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Similar content being viewed by others

References

  1. Milov A.D., Salikhov K.M., Shirov M.D.: Fiz. Tverd. Tela (Leningrad)23, 975 (1981)

    Google Scholar 

  2. Milov A.D., Ponomarev A.B., Tsvetkov Yu.D.: Chem. Phys. Lett.110, 67 (1984)

    Article  ADS  Google Scholar 

  3. Pannier M., Schädler V., Schöps M., Wiesner U., Jeschke G., Spiess H.W.: Macromolecules33, 7812 (2000)

    Article  ADS  Google Scholar 

  4. Pannier M., Schöps M., Schädler V., Wiesner U., Jeschke G., Spiess H.W.: Macromolecules34, 5555 (2001)

    Article  ADS  Google Scholar 

  5. Jeschke G.: Macromol. Rapid Commun.23, 227 (2002)

    Article  Google Scholar 

  6. Jeschke G., Godt A.: Chem. Phys. Chem4, 1328 (2003)

    Google Scholar 

  7. Hinderberger D., Spiess H.W., Jeschke G.: J. Phys. Chem. B108, 3698 (2004)

    Article  Google Scholar 

  8. Hinderberger D., Schmelz O., Rehahn M., Jeschke G.: Angew. Chem. Int. Ed.43, 4616 (2004)

    Article  Google Scholar 

  9. Persson M., Harbridge J.R., Hammarstrom P., Mitri R., Martensson L.-G., Carlsson U., Eaton G.R., Eaton S.S.: Biophys. J.80, 2886 (2001)

    Article  Google Scholar 

  10. Elsässer C., Brecht M., Bittl R.: J. Am. Chem. Soc.124, 12606 (2002)

    Article  Google Scholar 

  11. van Amsterdam I.M.C., Ubbink M., Canters G.W., Huber M.: Angew. Chem. Int. Ed.42, 62 (2003)

    Article  Google Scholar 

  12. Zhou Z., DeSensi S.C., Stein R.A., Brandon S., Dixit M., McArdle E.J., Warren E.M., Kroh H.K., Song L., Cobb C.E., Hustedt E.J., Beth A.H.: Biochemistry44, 15115 (2005)

    Article  Google Scholar 

  13. Nakamura M., Ueki S., Hara H., Arata T.: J. Mol. Biol.348, 127 (2005)

    Article  Google Scholar 

  14. Fajer P.G.: J. Phys. Condens. Matter17, S1459 (2005)

    Article  ADS  Google Scholar 

  15. Bennati M., Robblee J.H., Mugnaini V., Stubbe J., Freed J.H., Borbat P.: J. Am. Chem. Soc.127, 15014 (2005)

    Article  Google Scholar 

  16. Kay C.W.M., Elsässer C., Bittl R., Farrell S.R., Thorpe C.: J. Am. Chem. Soc.128, 76 (2006)

    Article  Google Scholar 

  17. Banham J.E., Timmel C.R., Abbott R.J.M., Lea S.M., Jeschke G.: Angew. Chem. Int. Ed.118, 1058 (2006)

    Article  Google Scholar 

  18. Jeschke G., Wegener C., Nietschke M., Jung H., Steinhoff H.-J.: Biophys. J.86, 2551 (2004)

    Article  ADS  Google Scholar 

  19. Jeschke G., Bender A., Schweikardt T., Panek G., Decker H., Paulsen H.: J. Biol. Chem.280, 18623 (2005)

    Article  Google Scholar 

  20. Hilger D., Jung H., Padan E., Wegener C., Vogel K.-P., Steinhoff H.-J., Jeschke G.: Biophys. J.89, 1328 (2005)

    Article  Google Scholar 

  21. Borovykh I.V., Ceola S., Gajula P., Gast P., Steinhoff H.-J., Huber M.: J. Magn. Reson.180, 178 (2006)

    Article  ADS  Google Scholar 

  22. Schiemann O., Piton N., Mu Y.G., Stock G., Engels J.W., Prisner T.F.: J. Am. Chem. Soc.126, 5722 (2004)

    Article  Google Scholar 

  23. Milov A.D., Tsvetkov Y.D., Formaggio F., Crisma M., Toniolo C., Raap J.: J. Am. Chem. Soc.122, 3843 (2000)

    Article  Google Scholar 

  24. Sale K., Song L., Liu Y.-S., Perozo E., Fajer P.: J. Am. Chem. Soc.127, 9334 (2005)

    Article  Google Scholar 

  25. Jeschke G., Koch A., Jonas U., Godt A.: J. Magn. Reson.155, 72 (2002)

    Article  ADS  Google Scholar 

  26. Milov A.D., Tsvetkov Y.D., Formaggio F., Oancea S., Toniolo C., Raap J.: Phys. Chem. Chem. Phys.6, 3596 (2004)

    Article  Google Scholar 

  27. Bowman M.K., Maryasov A.G., Kim N., DeRose V.J.: Appl. Magn. Reson.26, 23 (2004)

    Google Scholar 

  28. Jeschke G., Panek G., Godt A., Bender A., Paulsen H.: Appl. Magn. Reson.26, 223 (2004)

    Google Scholar 

  29. Jeschke G., Bender A., Paulsen H., Zimmermann H., Godt A.: J. Magn. Reson.169, 1 (2004)

    Article  ADS  Google Scholar 

  30. Chiang W.-Y., Borbat P.P., Freed J.H.: J. Magn. Reson.172, 279 (2005)

    Article  ADS  Google Scholar 

  31. Maryasov A.G., Tsvetkov Y.D.: Appl. Magn. Reson.18, 583 (2000)

    Article  Google Scholar 

  32. Milov A.D., Naumov B.D., Tsvetkov Y.D.: Appl. Magn. Reson.26, 587 (2004)

    Article  Google Scholar 

  33. Jeschke G.: ChemPhysChem3, 927 (2002)

    Article  Google Scholar 

  34. Godt A., Franzen C., Veit S., Enkelmann V., Pannier M., Jeschke G.: J. Org. Chem.65, 7575 (2000)

    Article  Google Scholar 

  35. Chechik V., Wellsted H.J., Korte A., Gilbert B.C., Caldararu H., Ionita P., Caragheorgheopol A.: Faraday Discuss.125, 279 (2004)

    Article  Google Scholar 

  36. Pannier M., Veit S., Godt A., Jeschke G., Spiess H.W.: J. Magn. Reson.142, 331 (2000)

    Article  ADS  Google Scholar 

  37. Stoll S., Schweiger A.: J. Magn. Reson.178, 42 (2006)

    Article  ADS  Google Scholar 

  38. Lindner P., Zemb T. (eds.): Neutrons, X-rays and Light: Scattering Methods Applied to Soft Condensed Matter, chapt. 13. Amsterdam: Elsevier 2002.

    Google Scholar 

  39. Milov A.D., Tsvetkov Yu.D.: Appl. Magn. Reson.12, 495 (1997)

    Article  Google Scholar 

  40. Hubbell W.L., Altenbach C.: Curr. Opin. Struct. Biol.4, 556 (1994)

    Article  Google Scholar 

  41. Tikhonov A.N., Goncharsky A., Stepanov V.V., Yagola A.G.: Numerical Methods for the Solution of Ill-posed Problems. Dordrecht: Kluwer Academic 1995.

    MATH  Google Scholar 

  42. Jeschke G., Zimmermann H., Godt A.: J. Magn. Reson.179, 412 (2006)

    Google Scholar 

  43. Martin R.E., Pannier M., Diederich F., Gramlich V., Hubrich M., Spiess H.W.: Angew. Chem. Int. Ed.37, 2834 (1998)

    Google Scholar 

  44. Jeschke G., Pannier M., Godt A., Spiess H.W.: Chem. Phys. Lett.331, 243 (2000)

    Article  ADS  Google Scholar 

  45. Hansen P.C.: SIAM Rev.34, 561 (1992)

    Article  MATH  MathSciNet  Google Scholar 

  46. Honerkamp J., Weese J.: Continuum Mech. Thermodyn.2, 17 (1990)

    Article  MATH  ADS  MathSciNet  Google Scholar 

  47. Weese J.: Comput. Phys. Commun.69, 99 (1992)

    Article  ADS  Google Scholar 

  48. Larsen R.G., Singel D.J.: J. Chem. Phys.98, 5134 (1993)

    Article  ADS  Google Scholar 

  49. Schweiger A., Jeschke G.: Principles of Pulse Electron Paramagnetic Resonance. Oxford: Oxford University Press 2001.

    Google Scholar 

  50. Wilhelm J., Frey E.: Phys. Rev. Lett.77, 2581 (1996)

    Article  ADS  Google Scholar 

  51. Ionita P., Caragheorgheopol A., Gilbert B.C., Chechik V.: J. Phys. Chem. B109, 3734 (2005)

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to G. Jeschke.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Jeschke, G., Chechik, V., Ionita, P. et al. DeerAnalysis2006—a comprehensive software package for analyzing pulsed ELDOR data. Appl. Magn. Reson. 30, 473–498 (2006). https://doi.org/10.1007/BF03166213

Download citation

  • Received:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF03166213

Keywords

Navigation