Skip to main content
Log in

Detection of allelic loss within the β1-interferon gene in childhood acute lymphoblastic leukemia using differential PCR

  • Original Article
  • Published:
Annals of Hematology Aims and scope Submit manuscript

Summary

Deletion of the short arm of chromosome 9p involving the Β1-interferon (IFN) gene has been implicated in the process of malignant transformation in lymphomas and acute lymphoblastic leukemias. Since cytogenetic analysis is frequently unsuccessful in clinical samples, we used a recently described differential PCR technique to detect losses within the Β1-IFN gene in 86 acute leukemias. Using differential PCR, no Β1-IFN deletion was detected in 44 acute myeloid leukemia (AML) and eight control samples. However, five of 42 acute lymphoblastic leukemia (ALL) probes (12%) exhibited loss of the Β1-IFN gene (three common ALL, two T-ALL). Cytogenetic analysis was performed independently in three of these five cases and revealed abnormalities of chromosome 9p in two samples. Two of five T-ALL cases exhibited a loss within the Β1-IFN gene, compared with 3/29 c-ALLs, suggesting a predominance of IFN gene loss in T-ALLs. These data indicate that PCR can be used for rapid detection of gene dosage phenomena in clinical leukemia samples.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  1. Bennett JM, Catovsky D, Daniel MT, Flandrin G, Galton DAG, Gralnick HR, Sultan C (1976) Proposals for the classification of acute leukemias. Br J Haematol 33:451–458

    PubMed  Google Scholar 

  2. Cowan JM, Halaban R, Franke U (1988) Cytogenetic analysis of melanocytes from premalignant nevi and melanomas. J Natl Cancer Inst 80:1159–1164

    PubMed  Google Scholar 

  3. Diaz MO, Ziemin S, Le Beau MM, Pitha P, Smith SS, Chilcote RR, Rawley JD (1988) Homozygous deletion of the Τ- and Β1-interferon genes in human leukemia and derived cell lines. Proc Natl Acad Sci USA 85:5259–5263

    PubMed  Google Scholar 

  4. Diaz MO, Rubin CM, Harden A, Ziemin S, Larson RA, Le Beau MM, Rawley JD (1990) Deletions of interferon genes in acute lymphoblastic leukemia. N Engl J Med 322:77–82

    PubMed  Google Scholar 

  5. Frye RA, Benz CC, Liu E (1989) Detection of amplified oncogenes by differential polymerase chain reaction. Oncogene 4:1153–1157

    PubMed  Google Scholar 

  6. Grander D, Heyman M, Bröndum-Nielsen K, Liu Y, Lundgren E, Söderhäll S, Einhorn E (1992) Interferon system in primary acute lymphocytic leukemia cells with or without deletions of the Τ-/Β-interferon genes. Blood 79:2076–2083

    PubMed  Google Scholar 

  7. Henze G, Fengler R, Hartmann R, Kornhuber B, Janka-Schaub G, Niethammer A, Riehm H (1991) Six-year experience with a comprehensive approach to the treatment of recurrent childhood acute lymphoblastic leukemia. A relapse study of the BFM group. Blood 78:1166–1172

    PubMed  Google Scholar 

  8. Lai JL, Fenaux P, Pollet JP, Estienne MH, Savary JB, Huart JJ, Deminatti M (1988) Acute lymphocytic leukemia with 9p anomalies — a report of four additional cases and review of the literature. Cancer Genet Cytogenet 33:99–109

    PubMed  Google Scholar 

  9. Neubauer A, Neubauer B, Liu E (1990) Polymerase chain reaction-based assay to detect allelic loss in human DNA: loss of beta-interferon gene in chronic myelogeneous leukemia. Nucleic Acids Res 18:993–998

    PubMed  Google Scholar 

  10. Neubauer A, Neubauer B, He M, Effert P, Iglehart D, Frye RA, Liu E (1992) Analysis or archival tissue by differential polymerase chain reaction. Oncogene 7:1019–1025

    PubMed  Google Scholar 

  11. Olopade OI, Buchhagen DL, Malik K, Sherman J, Nobori T, Bader S, Nau MM, Gazdar AF, Minna JD, Diaz MO (1993) Homozygous loss of the interferon genes defines the critical region on 9p that is deleted in lung cancers. Cancer Res 53:2410–2415

    PubMed  Google Scholar 

  12. Rochlitz CF, de Kant E, Neubauer A, Heide I, Bohmer R, Oertel J, Huhn D, Herrmann R (1992) PCR determined expression of the MDR1 gene in chronic lymphocytic leukemia. Ann Hematol 65:241–246

    PubMed  Google Scholar 

  13. Saiki RK, Gelfand DH, Stoffel S, Scharf SJ, Higuchi R, Horn GT, Mullis KB, Erlich HA (1988) Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 239:487–491

    PubMed  Google Scholar 

  14. Schmidt CA, Oettle H, Neubauer A, Seeger KH, Thiel E, Huhn D, Siegert W, Ludwig WD (1992) Rearrangements of T-cell receptor δ, Τ, and Β genes in acute myeloid leukemia coexpressing T-lymphoid features. Leukemia 6:1263–1267

    PubMed  Google Scholar 

  15. Trent JM, Olson S, Lawn RM (1982) Chromosomal localization of human leukocyte, fibroblast, and immune interferon genes by means of in situ hybridization. Proc Natl Acad Sci USA 79:7809–7813

    PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Schmidt, C.A., Neubauer, A., Seeger, K.H. et al. Detection of allelic loss within the β1-interferon gene in childhood acute lymphoblastic leukemia using differential PCR. Ann Hematol 68, 171–174 (1994). https://doi.org/10.1007/BF01834362

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF01834362

Key words

Navigation