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Biophysical Reviews

, Volume 10, Issue 6, pp 1521–1535 | Cite as

Multiscale simulation of actin filaments and actin-associated proteins

  • Fikret Aydin
  • Harshwardhan H. Katkar
  • Gregory A. VothEmail author
Review
  • 286 Downloads

Abstract

Actin is an important cytoskeletal protein that serves as a building block to form filament networks that span across the cell. These networks are orchestrated by a myriad of other cytoskeletal entities including the unbranched filament–forming protein formin and branched network–forming protein complex Arp2/3. Computational models have been able to provide insights into many important structural transitions that are involved in forming these networks, and into the nature of interactions essential for actin filament formation and for regulating the behavior of actin-associated proteins. In this review, we summarize a subset of such models that focus on the atomistic features and those that can integrate atomistic features into a larger picture in a multiscale fashion.

Keywords

Coarse-graining Cytoskeleton Protein dynamics Protein-protein interactions Molecular dynamics Enhanced sampling 

Notes

Compliance with ethical standards

Funding information

This study was financially supported in part by the National Science Foundation through NSF Grant CHE-1465248 and Materials Research Science and Engineering Center (MRSEC) grant DMR-14207090, and Department of Defense Army Research Office (ARO) through MURI grant W911NF1410403.

Conflict of interest

Fikret Aydin declares that he has no conflict of interest. Harshwardhan H. Katkar declares that he has no conflict of interest. Gregory A. Voth declares that he has no conflict of interest.

Ethical approval

This article does not contain any studies with human participants or animals performed by any of the authors.

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© International Union for Pure and Applied Biophysics (IUPAB) and Springer-Verlag GmbH Germany, part of Springer Nature 2018

Authors and Affiliations

  1. 1.Department of Chemistry, Institute of Biophysical Dynamics, and James Frank InstituteUniversity of ChicagoChicagoUSA

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