Virologica Sinica

, Volume 33, Issue 1, pp 111–115 | Cite as

Development of Multi-analyte Suspension Assay for Simultaneously Efficient Detection of Avian Influenza Virus A Subtypes

  • Yi Li
  • Longquan Ni
  • Jianjun Chen
  • Juan Yang
  • Fei Deng
  • Hualin Wang
Letter

Notes

Acknowledgements

This work was supported by grants from the National Natural Science Foundation of China (No. 81501430) and the Basic Work Program of the Ministry of Science and Technology of China (2013FY113500).

Compliance with Ethical Standards

Conflict of interest

The authors declare that they have no conflicts of interest.

Animal and Human Rights Statement

This article does not contain any studies with human or animal subjects performed by any of the authors.

Supplementary material

12250_2018_18_MOESM1_ESM.pdf (120 kb)
Supplementary material 1 (PDF 129 kb)
12250_2018_18_MOESM2_ESM.xlsx (582 kb)
Supplementary Table S1 Accession numbers of 27,549 Asian AIVs subtypes sequences downloaded from NCBI and GISAID database (XLSX 582 kb)

References

  1. Hugerth LW, Wefer HA, Lundin S, Jakobsson HE, Lindberg M, Rodin S, Engstrand L, Andersson AF (2014) DegePrime, a program for degenerate primer design for broad-taxonomic-range PCR in microbial ecology studies. Appl Environ Microbiol 80:5116–5123.  https://doi.org/10.1128/AEM.01403-14 CrossRefPubMedPubMedCentralGoogle Scholar
  2. Linhart C, Shamir R (2005) The degenerate primer design problem: theory and applications. J Comput Biol 12:431–456.  https://doi.org/10.1089/cmb.2005.12.431 CrossRefPubMedGoogle Scholar
  3. Munro SB, Kuypers J, Jerome KR (2013) Comparison of a multiplex real-time PCR assay with a multiplex Luminex assay for influenza virus detection. J Clin Microbiol 51:1124–1129.  https://doi.org/10.1128/JCM.03113-12 CrossRefPubMedPubMedCentralGoogle Scholar
  4. Olsen B, Munster VJ, Wallensten A, Waldenstrom J, Osterhaus AD, Fouchier RA (2006) Global patterns of influenza a virus in wild birds. Science 312:384–388.  https://doi.org/10.1126/science.1122438 CrossRefPubMedGoogle Scholar
  5. Poovorawan Y, Pyungporn S, Prachayangprecha S, Makkoch J (2013) Global alert to avian influenza virus infection: from H5N1 to H7N9. Pathog Glob Health 107:217–223.  https://doi.org/10.1179/2047773213Y.0000000103 CrossRefPubMedPubMedCentralGoogle Scholar
  6. Qu W, Zhou Y, Zhang Y, Lu Y, Wang X, Zhao D, Yang Y, Zhang C (2012) MFEprimer-2.0: a fast thermodynamics-based program for checking PCR primer specificity. Nucleic Acids Res 40:W205–W208.  https://doi.org/10.1093/nar/gks552 CrossRefPubMedPubMedCentralGoogle Scholar
  7. Subbarao K, Klimov A, Katz J, Regnery H, Lim W, Hall H, Perdue M, Swayne D, Bender C, Huang J, Hemphill M, Rowe T, Shaw M, Xu X, Fukuda K, Cox N (1998) Characterization of an avian influenza A (H5N1) virus isolated from a child with a fatal respiratory illness. Science 279:393–396CrossRefPubMedGoogle Scholar
  8. Webster RG, Bean WJ, Gorman OT, Chambers TM, Kawaoka Y (1992) Evolution and ecology of influenza A viruses. Microbiol Rev 56:152–179PubMedPubMedCentralGoogle Scholar
  9. Xiaoyan L, Jinying C, Mei K, Xu S, Ming Z, Liru G (2014) Development of high-throughput liquid chips for respiratory virus detection. Clin Lab 60:347–361CrossRefPubMedGoogle Scholar

Copyright information

© Wuhan Institute of Virology, CAS and Springer Nature Singapore Pte Ltd. 2018

Authors and Affiliations

  1. 1.State Key Laboratory of Virology, Wuhan Institute of VirologyChinese Academy of SciencesWuhanChina
  2. 2.CAS Key Laboratory of Special Pathogens and BiosafetyWuhan Institute of Virology, Chinese Academy of SciencesWuhanChina

Personalised recommendations