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Genetic Resources and Crop Evolution

, Volume 66, Issue 8, pp 1691–1698 | Cite as

Using SNP/INDEL diversity patterns to identify a core group of genotypes from FVC11, a superior hybrid family of Fragaria virginiana Miller and F. chiloensis (L.) Miller

  • S. D. S. S. Sooriyapathirana
  • L. T. Ranaweera
  • H. A. C. R. Perera
  • C. K. Weebadde
  • C. E. Finn
  • N. V. Bassil
  • J. F. HancockEmail author
Research Article
  • 38 Downloads

Abstract

A diverse strawberry family (FVC11) was created by intercrossing elite native clones of the progenitor species of F. × ananassa Duchesne in Lamarck [F. virginiana Miller × F. chiloensis (L.) Miller]. The impressive performance of FVC11 led us to identify a core subset within the family for conservation and breeding purposes. Cluster procedures were conducted on the phenotypic data of 16 traits and 29,251 SNP data generated using the genome wide SNP array, Affymetrix Axiom IStraw90TW. To select a core group, the best performing individuals were identified in each of the major clades shown in the phenographs derived from the genotypic and phenotypic data. A subgroup of 10 individuals was selected that represents most of the genetic diversity in FVC11.

Keywords

Conservation breeding Fragaria × ananassa Multi-trait selection SNPs Species reconstruction Wide-hybridization 

Notes

Funding

This grant was supported by the USDA-National Institute of Food and Agriculture “Specialty Crop Research Initiative Project”, “RosBREED: Enabling marker-assisted breeding in Rosaceae” (2009-51181-05808), AgBio Research, Michigan State University, East Lansing, MI, USA, the Oregon and Washington Strawberry Commissions.

Compliance with ethical standards

Conflict of interest

The authors declare that they have no conflicts of interest.

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Copyright information

© Springer Nature B.V. 2019

Authors and Affiliations

  1. 1.Department of Molecular Biology and Biotechnology, Faculty of ScienceUniversity of PeradeniyaPeradeniyaSri Lanka
  2. 2.Postgraduate Institute of Science, University of PeradeniyaPeradeniyaSri Lanka
  3. 3.Department of Plant, Soil and Microbial SciencesMichigan State UniversityEast LansingUSA
  4. 4.USDA-ARS, Horticultural Crops Research UnitCorvallisUSA
  5. 5.USDA-ARS, National Clonal Germplasm RepositoryCorvallisUSA
  6. 6.Department of HorticultureMichigan State UniversityEast LansingUSA
  7. 7.Berry Blue LLCGrand JunctionUSA

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