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High-quality draft genome sequence of Pseudomonas aeruginosa san ai, an environmental isolate resistant to heavy metals

  • Lidija Izrael-Živković
  • Vladimir Beškoski
  • Milena Rikalović
  • Snježana Kazazić
  • Nicole Shapiro
  • Tanja Woyke
  • Gordana Gojgić-Cvijović
  • Miroslav M. Vrvić
  • Nela Maksimović
  • Ivanka KaradžićEmail author
Original Paper
  • 38 Downloads

Abstract

The strain Pseudomonas aeruginosa san ai, isolated from an extreme environment (industrial mineral cutting oil, pH 10), is able to survive and persist in the presence of a variety of pollutants such as heavy metals and organic chemicals. The genome of P. aeruginosa san ai is 6.98 Mbp long with a GC content of 66.08% and 6485 protein encoding genes. A large number of genes associated with proteins, responsible for microbial resistance to heavy metal ions and involved in catabolism of toxic aromatic organic compounds were identified. P. aeruginosa san ai is a highly cadmium-resistant strain. Proteome analysis of biomass after cadmium exposal confirmed a high tolerance to sublethal concentrations of cadmium (100 mg/L), based on: extracellular biosorption, bioaccumulation, biofilm formation, controlled siderophore production and a pronounced metalloprotein synthesis. Proteins responsible for survival in osmostress conditions during exposure to elevated concentrations of cadmium (200 mg/L) demonstrate a strong genetic potential of P. aeruginosa san ai for survival and adaptation. Sequencing of P. aeruginosa san ai genome provides valuable insights into the evolution and adaptation of this microbe to environmental extremes at the whole-genome level, as well as how to optimally use the strain in bioremediation of chemically polluted sites.

Keywords

Pseudomonas aeruginosa Genome Environmental isolate Chemical pollution Cleaning polluted areas 

Abbreviations

MALDI-TOF

Matrix-assisted laser-desorption/ionization time-of-flight

(U) HPLC

(ultra) High-performance liquid chromatography

MS

Mass spectrometry

NCAIM

National Collection of Agricultural and Industrial Microorganisms

ISS WDCM

Institute of Soil Science World Data Center for Microorganisms

MIGS

The minimum information about a genome sequence

Notes

Acknowledgements

This research was supported by the JGI, Project CSP 741 and the Ministry of Science and Technological Development of Serbia, Project III43004. The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the US Department of Energy under Contract No. DE-AC02-05CH11231.

Compliance with ethical standards

Conflict of interest

The authors declare that there is no conflict of interest.

Supplementary material

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Supplementary material 1 (DOCX 15 kb)
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Supplementary material 2 (DOC 47 kb)
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Supplementary material 3 (DOCX 14 kb)
792_2019_1092_MOESM4_ESM.doc (56 kb)
Supplementary material 4 (DOC 56 kb)

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Copyright information

© Springer Japan KK, part of Springer Nature 2019

Authors and Affiliations

  • Lidija Izrael-Živković
    • 1
  • Vladimir Beškoski
    • 2
  • Milena Rikalović
    • 3
  • Snježana Kazazić
    • 4
  • Nicole Shapiro
    • 5
  • Tanja Woyke
    • 5
  • Gordana Gojgić-Cvijović
    • 6
  • Miroslav M. Vrvić
    • 2
  • Nela Maksimović
    • 7
  • Ivanka Karadžić
    • 1
    Email author
  1. 1.Department of Chemistry, Faculty of MedicineUniversity of BelgradeBelgradeSerbia
  2. 2.Faculty of ChemistryUniversity of BelgradeBelgradeSerbia
  3. 3.Faculty of Applied Ecology FuturaSingidunum UniversityBelgradeSerbia
  4. 4.RuđerBošković InstituteZagrebCroatia
  5. 5.DOE Joint Genome InstituteWalnut CreekUSA
  6. 6.Department of Chemistry, Institute of Chemistry, Technology and MetallurgyUniversity of BelgradeBelgradeSerbia
  7. 7.Department of Human Genetics, Faculty of MedicineUniversity of BelgradeBelgradeSerbia

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