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Complete genome sequence of a tentative new umbravirus isolated from Patrinia scabiosaefolia

  • Seungmo Lim
  • Su-Heon LeeEmail author
  • Jae Sun MoonEmail author
Annotated Sequence Record
  • 6 Downloads

Abstract

The complete genomic RNA sequence of a tentative new umbravirus from Patrinia scabiosaefolia, tentatively named “patrinia mild mottle virus” (PatMMoV), was determined. The genome of PatMMoV consists of 4,214 nucleotides and has a typical umbravirus genome organization with four open reading frames. BLAST searches showed that the complete nucleotide sequence of PatMMoV had the highest identity (72%; 50% query coverage) to Ixeridium yellow mottle-associated virus 2 (IxYMaV-2; an unclassified umbravirus). In addition, phylogenetic analysis and pairwise comparisons showed that PatMMoV and IxYMaV-2 were the most closely related and placed in the same clade within a group of umbraviruses. These results suggest that PatMMoV is a putative new member of the genus Umbravirus in the family Tombusviridae.

Notes

Acknowledgements

This work was supported by the KRIBB Research Initiative Program, funded by the Ministry of Science and ICT, Republic of Korea.

Funding

This study was funded by KRIBB (Ministry of Science and ICT), Republic of Korea.

Compliance with ethical standards

Conflict of interest

The authors declare that they have no conflict of interest.

Ethical approval

This article does not contain any studies with human participants or animals undertaken by any of the authors.

Supplementary material

705_2019_4312_MOESM1_ESM.doc (64 kb)
Supplementary material 1 (DOC 64 kb)
705_2019_4312_MOESM2_ESM.pptx (858 kb)
Supplementary material 2 (PPTX 857 kb)

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Copyright information

© Springer-Verlag GmbH Austria, part of Springer Nature 2019

Authors and Affiliations

  1. 1.Plant Systems Engineering Research CenterKorea Research Institute of Bioscience and BiotechnologyDaejeonRepublic of Korea
  2. 2.School of Applied Biosciences, College of Agriculture and Life SciencesKyungpook National UniversityDaeguRepublic of Korea

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