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Simple Identification of Mycobacterial Species by Sequence-Specific Multiple Polymerase Chain Reactions

  • Nihan Unubol
  • Inci Tuney Kizilkaya
  • Sinem Oktem Okullu
  • Kaya Koksalan
  • Tanil KocagozEmail author
Article
  • 26 Downloads

Abstract

Several species of mycobacteria cause infections in humans. Species identification of clinical isolates of mycobacteria is very important for the decision of treatment and in choosing the appropriate treatment regimen. We have developed a multiplex PCR method that can identify practically all known species of mycobacteria, by determination of single-nucleotide differences at a total of 13 different polymorphic regions in the genes of rRNA and hsp65, in four PCR mixes. To achieve this goal, single-nucleotide differences in these polymorphic regions were used to divide mycobacterial species into two groups, than four, eight, etc., in an algorithmic manner. It was sufficient to reach single species level by evaluating 13 polymorphic regions. Evaluation of the multiplex PCR patterns by observable real-time electrophoresis (ORTE) simplified species identification. This new method may enable easy, rapid, and cost-effective identification of all species of mycobacteria.

Notes

Acknowledgements

This work was supported by TUBİTAK 107S014 (SBAG-3541) Identification of Mycobacterial Species by Sequence-Specific Polymerase Chain Reaction; for financial aid, I wish to thank TÜBİTAK.

Compliance with Ethical Standards

Conflict of interest

The authors declare that they have no conflict of interest.

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Copyright information

© Springer Science+Business Media, LLC, part of Springer Nature 2019

Authors and Affiliations

  • Nihan Unubol
    • 1
    • 2
  • Inci Tuney Kizilkaya
    • 3
  • Sinem Oktem Okullu
    • 1
    • 2
  • Kaya Koksalan
    • 4
  • Tanil Kocagoz
    • 1
    • 2
    Email author
  1. 1.Department of Medical Microbiology, Faculty of MedicineAcibadem Mehmet Ali Aydınlar UniversityIstanbulTurkey
  2. 2.Department of Medical Biotechnology, Institute of Health SciencesAcibadem Mehmet Ali Aydınlar UniversityIstanbulTurkey
  3. 3.Faculty of Sciences, Department of BiologyEge UniversityIzmirTurkey
  4. 4.Aziz Sancar Institute of Experimental MedicineIstanbul UniversityIstanbulTurkey

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