Using fluorescent probes and FRAP to investigate macromolecule diffusion in steam-exploded wood
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Diffusion of fluorescently labeled dextran of varying molecular weight in wood pretreated by steam explosion was studied with a confocal microscope. The steam explosion experiments were conducted at relatively mild conditions relevant for materials biorefinery at a pressure of 14 bars for 10 min. The method of fluorescence recovery after photobleaching (FRAP) was used to perform diffusion measurements locally in the wood microstructure. It was found that the FRAP methodology can be used to observe differences in the diffusion coefficient based on localization in the microstructure, i.e., earlywood, latewood, and cell wall. Microscopic changes due to steam explosion were seen to increase diffusion of the smaller 3-kDa dextran diffusion probe in the earlywood, while the latewood structure was not affected in any significant way. Macroscopic changes to the structure in the form of ruptures due to the steam explosion pretreatment were observed to increase the rate of diffusion for the larger 40-kDa dextran probe.
Biomass as a renewable resource is an important step toward a sustainable society by lowering the use of fossil fuels. The most abundant biomass resource is by far woody biomass (Liu et al. 2012), and integration of pulp mills into biorefineries, with the infrastructure already in place, is the key for the biorefinery concept (Gomes et al. 2014). The main goal of the material biorefinery is to produce value-added products and materials from high molecular weight of cellulose, hemicellulose, and lignin. Other than the inherent polymers found in wood, enzymes are of interest in the biorefinery concept to aid in the hydrolysis of polysaccharides (Hasunuma et al. 2013). Diffusion of polysaccharides and enzymes are hindered by the wood microstructure (Wu et al. 2009; Kvist et al. 2017), and to increase the overall mass transport rate, a pretreatment step is often used.
Steam explosion (SE) is an extensively used physicochemical pretreatment method for biomass (Alvira et al. 2010) which can also be used at milder conditions to open up the structure for easier processability (Agbor et al. 2011). At harsher conditions, i.e., higher pressures, degradation of the main constituents takes place to a higher degree (Wang et al. 2009) and is desired if for example a bio-fuel platform is used. However, for the biorefinery focusing on materials, it is desired to retain large molecular weight of the constituents, thus milder conditions are favorable.
In SE, wood chips are treated with pressurized steam for a specific time period, and then the pressure is rapidly released, causing a pressure difference between the interior of the wood chips and the surrounding vessel, and finally the softened chips collide with other chips and the vessel walls (Muzamal et al. 2015). Chemical modifications occur during the steam treatment due to the high temperature of the steam, which can be observed by the dark discoloration of the wood (Zhang and Cai 2006). The rapid release of pressure has shown to increase the average pore diameter, attributed to removal of hemicellulose and lignin in combination with deformation of the cell wall (Muzamal et al. 2015). Further, the collisions of the soft wood chips after the pressure release cause significant physical damage, splits, and brush-like tears of the chips depending on the angle of impact (Muzamal et al. 2015; Muzamal and Rasmuson 2017).
Previous experiments on diffusion in wood have mostly utilized diffusion cells, measuring through diffusion of various ions (e.g., Cady and Williams 1935; Burr and Stamm 1947; Behr et al. 1952; Narayanamurti and Kumar 1953). More recent studies attempt to study the time-dependent ion concentration profiles by cutting the wood samples at different times prior to analysis (Kazi et al. 1996; Jacobson et al. 2006; Kolavali and Theliander 2013). Fluorescence recovery after photobleaching (FRAP) offers a nondestructive way of measuring diffusion as well as performing localized measurements inside a sample.
FRAP has emerged during the last two decades as a common and powerful method for measuring mass transport properties (Lorén et al. 2015). A confocal microscope is used to direct high-intensity light into a region of interest that will cause substantial photobleaching of the fluorescent molecules present in the area. This will impose a concentration gradient of non-bleached molecules in the region of interest, where unbleached molecules will diffuse into. The recovery of intensity in this area is a function of how fast unbleached molecules diffuse into the area. The local diffusion rate can be estimated from the rate of intensity recovery. Dextran labeled with the fluorophore fluorescein isothiocyanate (FITC) is commonly used as a diffusion probe in FRAP experiments (Deschout et al. 2014).
FRAP was first developed as a technique to measure the transport of proteins and lipids in living cells (Axelrod et al. 1976) and has been further developed and generalized (Kang et al. 2009) to include diffusion during the photobleaching step. This technique has since then been used to study various different proteins in a number of cell membranes and living cells (Lorén et al. 2015). Apart from the field of cell biology, FRAP has found an important foothold in pharmaceutical research due to the technique’s noninvasiveness and high specificity, making it possible to measure diffusion in vivo in complex materials (Deschout et al. 2014). Hydrogels have been especially interesting for a time-controlled drug delivery system where the heterogeneous structure inside the gel controls the delivery. Several studies have been conducted with FRAP to characterize the diffusive process in different gel structures (Hagman et al. 2012; Videcoq et al. 2013; Schuster et al. 2014, 2016; Lopez-Sanchez et al. 2015; Peixoto et al. 2015). FRAP has also been successfully used in food science where the microstructure of food often is a multiphase mixture of, for example, gels, foams, and emulsions (Wassén et al. 2014) where mass transport mechanisms control part of the final properties of the food product.
Model systems for mimicking parts of a cell wall in the form of gels have been investigated using the FRAP technique to study the influence of the size of the diffusion probe as well as the influence of the porous gel mesh size (Paës and Chabbert 2012). The hydrodynamic radius of dextran probes was found to influence diffusion more than the size of the mesh. On the other hand, the protein diffusion probes showed indications of anomalous diffusion, which they attributed to the interaction with the gel. Similarly, studies of the size dependency of molecules have been conducted by Yang et al. (2013), in which dextrans were used as diffusion probes. The porous structure was made from milled filter paper to evaluate the influence of pore size distribution on diffusion of the probe. Further studies on gel structures have been conducted using the FRAP technique to assess the effect of substrate hydrolysis and substrate binding on the mobility of enzymes (Cuyvers et al. 2011). Similar studies investigating binding and surface diffusion of cellulases on cellulose fibers have been performed using FRAP (Moran-Mirabal 2013). A more rigorous study on the mechanisms of carbohydrate-binding domains (CBMs) was carried out by Paës et al. (2015) utilizing FRAP and a set of similar CMBs in a variation of bioinspired assemblies. FRAP has recently been used to investigate diffusion in the wood cell wall for several types of chemical pretreatment methods for large-size dextran molecules (Paës et al. 2017).
The aim of the present study was to assess diffusion coefficients locally of large molecules in softwood pretreated with mild steam explosion used in the materials biorefinery concept. Fluorescently marked dextran of different size was used with the FRAP methodology on samples prepared with and without steam explosion. The inherent flexibility of FRAP with a confocal microscope is very suitable for the variations present in the wood microstructure as well as the local effects of the steam explosion pretreatment. Evaluation of the size of the diffusion probe as well as location within the wood structure was performed.
Materials and methods
Samples were prepared from a stem of Norway spruce (Picea abies) obtained from Södra (Värö, Sweden). The heartwood was cut into 4 × 20 × 130 mm3 rectangles and stored in airtight polyethylene bags in a freezer at − 18 °C. FITC-dextran of molecular weight 3, 10, and 40 kDa was purchased from Invitrogen Molecular Probes (Eugene, OR, USA).
Three different wood samples were prepared in order to analyze both physical and chemical effects of steam explosion: Untreated native wood as reference, steam-exploded wood (SEW), and steam-exploded and impacted wood (SEIW). The SEW samples are characterized by the discoloration due to high temperature steam and hydrolysis occurring. The pressure release causes an increase in porosity (Muzamal et al. 2015). The significance of the impact step for the SEIW samples, where the soft wood chips collide with other chips and vessel walls, is shown by distinct cracks and a further increase in porosity. Chemical analysis of samples for both residence time (Jedvert et al. 2012a) and temperature (Jedvert et al. 2012b) have shown that mainly small amounts of glucomannans extract during the process for short residence time (< 10 min).
The dextran probes were diluted in deionized water. The probe concentration was 150 ppm, chosen to give a linear response in fluorescence versus concentration. A total of 20 ml of solution was prepared in polypropylene (PP) containers for each probe. The wood samples, as seen in Fig. 1, were impregnated with the probe solution using a vacuum-pressure cycle in an autoclave at room temperature (22 °C) based on Kolavali and Theliander (2013). Vacuum was applied for 30 min after which the autoclave was pressurized with nitrogen at 5 bar for 1 h. The procedure was repeated for up to five cycles and when no floating pieces were observed the samples were assumed to be fully impregnated. The containers were sealed with tin foil to protect them from light source degradation and were stored in a refrigerator prior to use.
Fluorescence recovery after photobleaching (FRAP) measurements and imaging of the wood microstructure were carried out on a Leica SP5 confocal laser scanning microscope (CLSM) AOBS (Heidelberg, Germany). The light source used was an argon laser with an emission wavelength of 488 nm. A water immersion objective with a magnification of 20 and a numerical aperture (NA) of 0.50 was used throughout the study. Beam expander 1 was used, which lowered the effective NA to approximately 0.35 and yielded a slightly more cylindrical bleaching profile which will induce significant photobleaching above and below the focal plane thus avoiding diffusion along the optical axis (Deschout et al. 2010). It is crucial for the precision of the diffusion rate estimate that the depth of the cylindrical bleaching profile is considerably larger than the diameter of the bleaching region. If this condition is true, then the diffusion rate mainly depends on the radial diffusion, and a 2D model can be used, which substantially simplifies the calculations (Lorén et al. 2015).
The FRAP measurements were carried out at room temperature (22 °C) with the following settings: image format 256 × 256 pixels, zoom factor 4 (with a zoom-in during bleaching), and scanning rate 1000 Hz, rendering an image acquisition rate of 0.265 s per image and a pixel size of 0.73 µm. The FRAP images were stored as 12-bit tiff images. The images were recorded using a PMT detector.
In a heterogeneous sample, it is common that the efficiency of the bleaching is varying depending on the local sample transparency. In addition, different diffusion probes need slightly different amounts of laser power to obtain similar degree of bleaching. Thus, to perform consistent measurements, the number of bleaching images was adjusted to achieve an initial bleaching degree of approximately 30% of the pre-bleach intensity. The laser intensity was adjusted using AOTF (acusto-optical tunable filters) to be low during pre- and post-bleach to avoid unwanted bleaching effects while during bleaching the intensity was high.
Two different pixel-based frameworks were used to process the data from the FRAP measurements. The bulk of the measurements were performed with a circular region of interest (ROI) utilizing a model (Jonasson et al. 2008) assuming an initial photobleaching profile that is approximately Gaussian. The circular ROI fits well with the tracheid cells in wood. For more specific cell wall measurements, the more flexible method of rectangular FRAP (rFRAP) (Deschout et al. 2010) was used. An important assumption in the rFRAP is a linear photobleaching process which means that only a small amount of bleaching is allowed. It was shown in a validation experiment with FITC-dextran in sucrose solution that rFRAP is independent of the amount of photobleaching up to 50% (Deschout et al. 2010). All FRAP data evaluations were performed in MATLAB (MathWorks, USA).
The region of interest (ROI) was chosen such that consistent measurements could be performed on the different samples. To investigate the lumen to lumen diffusion rates, circular ROIs were used to completely bleach the entire lumen, including the cell wall, to achieve consistent bleaching along the fiber direction. The circular ROIs were placed adjacent to both ray parenchyma cells and the interface between earlywood and latewood to investigate the effect of structural elements on diffusion rates, compared to lumens only surrounded by other lumens.
Results and discussion
Diffusion coefficients (μm2/s) obtained from the FRAP measurements are presented in four sections. The first section presents the free diffusion coefficient of the dextran probes in solution. This is followed by radial diffusion between lumens to investigate the effect of the steam explosion pretreatment as well as the size of the probe. Diffusion in the latewood cell wall is presented in the third section. The fourth section deals with physical structural modifications of the microstructure and its effect on diffusion locally.
Measurements were performed with at least five replications for each sample and each diffusion probe for the majority of the experiments. For the impacted wood samples in the last section, two replications at each enumerated position were performed. Some of the samples show signs of compression which might have influenced the FRAP measurements. However, nothing is known of the relative diffusion in compression wood which is more highly lignified relative to that of normal wood so this is of unknown significance. To assess the statistical significance of the diffusion probes, an ANOVA two-way analysis with a subsequent multiple comparison test by the Tukey–Kramer method for the significant main effects was performed within a 95% confidence interval for the true mean difference performed in MATLAB (MathWorks, USA).
Free diffusion of dextran
Free diffusion coefficients D0 in μm2/s of dextran in aqueous solutions. The hydrodynamic radius in nm was estimated by the Stokes–Einstein equation (Cussler 2009) based on the diffusion coefficient obtained from the FRAP measurements
Molecular weight (kDa)
Diffusion coefficient (μm2/s)
Hydrodynamic radius (nm)
154.3 ± 1.9
1.59 ± 0.02
75.6 ± 1.3
3.25 ± 0.05
42.6 ± 0.6
5.76 ± 0.08
For smaller ROI sizes (< 10 μm), the amount of pixels in the region reaches a critical point and the FRAP measurement becomes more difficult to analyze accurately. It was found that the 40-kDa dextran had least variations among the probes for ROI sizes down to 3 μm. As such, this probe was used exclusively for measurements when small ROI sizes were required.
Radial diffusion from lumen to lumen: Effect of explosion, impact, and size of probe
SEIW samples have a large variety in structural modifications and for the results here samples were chosen such that they could directly be compared with the native and SEW samples. Thus, parts of the SEIW sample without ruptures were chosen, and the main observable difference of the earlywood was that the cell wall was less rigid. The result shows that the diffusion coefficient is dependent on treatment for the smallest probe but not for the larger probes. This could be due to small increases in cell wall porosity due to removal of lignin and hemicelluloses (Donaldson et al. 1988) as well as microcracks caused by the impact after the rapid pressure release (Muzamal et al. 2015).
Results are presented in Fig. 9b. Some variations among the samples can be seen which is most likely due to the difficulty in performing consistent measurements between the samples. However, no significant difference for neither the diffusion probe size nor sample pretreatment is observed for latewood. Compared to earlywood, the diffusion coefficient in latewood is lower, especially for the 3 kDa dextran. The treatment does not seem to affect the dense structure of the latewood to any degree for samples without cell wall ruptures.
Diffusion in the cell wall
Additional cell wall measurements were primarily taken of latewood due to the thicker cell walls present in that part of the wood structure, with a rectangle ROI size of 3 μm for the 40-kDa diffusion probe.
Diffusion in impacted wood
In the large void caused by the separation, the diffusion coefficient has approached the free diffusion coefficient (1–4 in Fig. 11b) and the nearby cell walls have little to no effect, as should be expected. For nearby lumens close to the rupture (5–7 in Fig. 11b), the diffusion coefficient is lower indicating that the probe is somewhat obstructed.
The FRAP methodology was successfully used to obtain diffusion coefficients locally within the native and steam-exploded wood for dextran molecules of molecular weight similar to that which is relevant in a material driven biorefinery, such as enzymes and polysaccharides. Results show a range of diffusivities obtained in the different microscopic structures in wood from earlywood, latewood, cell wall, and structural deformation due to the steam explosion pretreatment. It was observed that the microscopic changes in the earlywood cell wall due to pretreatment gave rise to an increase in diffusion of the smaller dextran of 3 kDa. Macroscopic changes, such as ruptures and tears in the cell wall, were seen to increase the rate of diffusion for the larger 40-kDa dextran close to the damaged structure. Localization in the latewood cell wall was seen to affect the diffusion coefficient. The corner middle lamella had higher diffusion rates compared to the middle of the cell wall.
Previous studies have shown an increase in porosity by mild steam explosion attributed to removal of hemicellulose and lignin as well as the deformation of the internal structure of the cell wall due to the rapid pressure release. The flexibility of the FRAP methodology made it possible to locally investigate these changes and to better understand how it affects the overall diffusion rates.
The authors would like to thank Wallenberg Wood Science Center for financial support and SuMo Biomaterials for support with confocal microscopy.
- Cuyvers S, Hendrix J, Dornez E, Engelborhs Y, Delcour JA, Courtin CM (2011) Both substrate hydrolysis and secondary substrate binding determine xylanase mobility as assessed by FRAP. J Biol Chem 115:4810–4817Google Scholar
- Hasunuma T, Okazaki F, Okai N, Hara KY, Ishii J, Kondo A (2013) A review of enzymes and microbes for lignocellulosic biorefinery and the possibility of their application to consolidated bioprocessing technology. Bioresour Technol 135:513–522. https://doi.org/10.1016/j.biortech.2012.10.047 CrossRefPubMedGoogle Scholar
- Kang M, Day CA, Drake K, Kenworthy AK, DiBenedetto E (2009) A generalization of theory for two-dimensional fluorescence recovery after photobleaching applicable to confocal laser scanning microscopes. Biophys J 97:1501–1511. https://doi.org/10.1016/j.bpj.2009.06.017 CrossRefPubMedPubMedCentralGoogle Scholar
- Kazi KMF, Gauvin H, Jollez P, Chornet E (1996) A diffusion model for the impregnation of lignocellulosic materials. Tappi 80:209–219Google Scholar
- Wu N, Hubbe MA, Rojas OJ, Park S (2009) Permeation of polyelectrolytes and other solutes into the pore spaces of water-swollen cellulose: a review. BioResources 4:1222–1262Google Scholar
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