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Contribution of Yeast Artificial Chromosome-Based Physical Maps to the Final Assembly of the Trypanosoma cruzi Genome

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Abstract

This chapter describes the methodology used both in performing the electrophoretic karyotype of the protozoan parasite Trypanosoma cruzi and mapping the genetic markers of the chromosomal bands, the construction of chromosome-specific YAC contigs, and their use to assign a chromosomal location to whole genome shotgun sequences.

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References

  1. Cano, M. I., Gruber, A., Vasquez, M., et al. (1995) Trypanosoma cruzi genome project: Molecular karyotype of clone CL Brener. Mol. Biochem. Parasitol. 71, 273–278.

    Article  CAS  PubMed  Google Scholar 

  2. Henriksson, J., Aslund, L., and Pettersson, U. (1996) Karyotype variability in Trypanosoma cruzi. Parasitol. Today 12, 108–114.

    Article  CAS  PubMed  Google Scholar 

  3. Zingales, B., Rondinelli, E., Degrave, W., et al. (1997) The Trypanosoma cruzi genome initiative. Parasitol. Today 13, 16–22.

    Google Scholar 

  4. Ferrari, I., Brandariz, S., Santos, M. R., et al. (1997) Towards the physical map of the Trypanosoma cruzi nuclear genome: construction of YAC and BAC libraries of the reference clone T. cruzi CL Brener. Mem. Inst. Oswaldo Cruz 92, 843–858.

    Article  CAS  PubMed  Google Scholar 

  5. Santos, M. R. M., Lorenzi, H., Porcile, P., et al. (1999) Physical mapping of a 670-kb region of chromosomes XVI and XVII from the human protozoan parasite Trypanosoma cruzi encompassing the genes for two immunodominant antigens. Genome Res. 9, 1268–1276.

    Article  CAS  PubMed  Google Scholar 

  6. Porcile, P. E., Santos, M. R., Souza, R. T., et al. (2003) A refined molecular karyotype for the reference strain of the Trypanosoma cruzi genome project (clone CL Brener) by assignment of chromosome markers. Gene 308, 53–65.

    Article  CAS  PubMed  Google Scholar 

  7. El-Sayed, N. M., Myler, P. J., Bartholomeu, D. C., et al. (2005) The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas’ disease. Science 309, 409–415.

    Article  CAS  PubMed  Google Scholar 

  8. Zingales, B., Pereira, M.S.E., Oliveira, R.P., et al. (1997) Trypanosoma cruzi: genome project: biological characteristics and molecular typing of clone CL Brener. Acta. Tropica 68, 159–173.

    Article  CAS  PubMed  Google Scholar 

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© 2006 Humana Press Inc., Totowa NJ

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Santos, M.R.M., Barros, R.R.M., Porcile, P.E., Levin, M.J., da Silveira, J.F. (2006). Contribution of Yeast Artificial Chromosome-Based Physical Maps to the Final Assembly of the Trypanosoma cruzi Genome. In: MacKenzie, A. (eds) YAC Protocols. Methods in Molecular Biology™, vol 349. Humana Press. https://doi.org/10.1385/1-59745-158-4:187

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  • DOI: https://doi.org/10.1385/1-59745-158-4:187

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-58829-612-2

  • Online ISBN: 978-1-59745-158-1

  • eBook Packages: Springer Protocols

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