Abstract
Multiple experimental tools have demonstrated that cytokine-induced STAT activation entails the transition of dimer conformations rather than de novo dimerization. In this chapter, we describe the utilization of analytical ultracentrifugation (AUC) as a powerful technique for the quantitative analysis of hydro- and thermodynamic properties of STAT proteins in solution. These studies provided a quantitative understanding of dimer stability and conformational transitions associated with the activation of STAT1.
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References
Chen X, Vinkemeier U, Zhao Y, Jeruzalmi D, Darnell JE Jr, Kuriyan J (1998) Crystal structure of a tyrosine phosphorylated STAT-1 dimer bound to DNA. Cell 93:827–839
Becker S, Groner B, Muller CW (1998) Three-dimensional structure of the Stat3beta homodimer bound to DNA. Nature 394:145–151
Shuai K, Horvath CM, Huang LH, Qureshi SA, Cowburn D, Darnell JE Jr (1994) Interferon activation of the transcription factor Stat91 involves dimerization through SH2-phosphotyrosyl peptide interactions. Cell 76:821–828
Stancato LF, David M, Carter-Su C, Larner AC, Pratt WB (1996) Preassociation of STAT1 with STAT2 and STAT3 in separate signalling complexes prior to cytokine stimulation. J Biol Chem 271:4134–4137
Novak U, Ji H, Kanagasundaram V, Simpson R, Paradiso L (1998) STAT3 forms stable homodimers in the presence of divalent cations prior to activation. Biochem Biophys Res Commun 247:558–563
Ndubuisi MI, Guo GG, Fried VA, Etlinger JD, Sehgal PB (1999) Cellular physiology of STAT3: where’s the cytoplasmic monomer? J Biol Chem 274:25499–25509
Haan S, Kortylewski M, Behrmann I, Muller-Esterl W, Heinrich PC, Schaper F (2000) Cytoplasmic STAT proteins associate prior to activation. Biochem J 345(Pt 3):417–421
Braunstein J, Brutsaert S, Olson R, Schindler C (2003) STATs dimerize in the absence of phosphorylation. J Biol Chem 278:34133–34140
Ota N, Brett TJ, Murphy TL, Fremont DH, Murphy KM (2004) N-domain-dependent nonphosphorylated STAT4 dimers required for cytokine-driven activation. Nat Immunol 5:208–215
Zhong M, Henriksen MA, Takeuchi K, Schaefer O, Liu B, ten Hoeve J, Ren Z, Mao X, Chen X, Shuai K, Darnell JE Jr (2005) Implications of an antiparallel dimeric structure of nonphosphorylated STAT1 for the activation-inactivation cycle. Proc Natl Acad Sci USA 102:3966–3971
Mertens C, Zhong M, Krishnaraj R, Zou W, Chen X, Darnell JE Jr (2006) Dephosphorylation of phosphotyrosine on STAT1 dimers requires extensive spatial reorientation of the monomers facilitated by the N-terminal domain. Genes Dev 20:3372–3381
Mao X, Ren Z, Parker GN, Sondermann H, Pastorello MA, Wang W, McMurray JS, Demeler B, Darnell JE Jr, Chen X (2005) Structural bases of unphosphorylated STAT1 association and receptor binding. Mol Cell 17:761–771
Neculai D, Neculai AM, Verrier S, Straub K, Klumpp K, Pfitzner E, Becker S (2005) Structure of the unphosphorylated STAT5a dimer. J Biol Chem 280:40782–40787
Ren Z, Mao X, Mertens C, Krishnaraj R, Qin J, Mandal PK, Romanowski MJ, McMurray JS, Chen X (2008) Crystal structure of unphosphorylated STAT3 core fragment. Biochem Biophys Res Commun 374:1–5
Wenta N, Strauss H, Meyer S, Vinkemeier U (2008) Tyrosine phosphorylation regulates the partitioning of STAT1 between different dimer conformations. Proc Natl Acad Sci USA 105:9238–9243
Nardozzi J, Wenta N, Yasuhara N, Vinkemeier U, Cingolani G (2010) Molecular basis for the recognition of phosphorylated STAT1 by importin alpha5. J Mol Biol 402:83–100
Svedberg T, Nichols JB (1923) Determination of size and distribution of size of particle by centrifugal methods. J Am Chem Soc 45:2910–2917
Svedberg T, Rinde H (1924) The ultra-centrifuge, a new instrument for the determination of size and distribution of size of particles in amicroscopic colloids. J Am Chem Soc 46:2677–2693
Pickels EG (1950) Mach Des 22:102–107
Colfen H, Laue TM, Wohlleben W, Schilling K, Karabudak E, Langhorst BW, Brookes E, Dubbs B, Zollars D, Rocco M, Demeler B (2010) The open AUC project. Eur Biophys J 39:347–359
Einstein A (1905) Über die von der Molekularkinetischen Theorie der Wärme geforderte Bewegung von in ruhenden Flüssigkeiten suspendierten Teilchen. Ann Phys 17:182–193
Stokes GG (1850) On the effect of the internal friction of fluids on the motion of pendulums. Trans Cambridge Phil Soc 9:8–106
Fick A (1855) Über diffusion. Ann Phys Chem 94:59–86
Lamm O (1929) Die Differenzialgleichung der Ultrazentrifugierung. Ark Mat Astron Fysik 21B:1–4
Vinkemeier U, Cohen SL, Moarefi I, Chait BT, Kuriyan J, Darnell JE Jr (1996) DNA binding of in vitro activated Stat1 alpha, Stat1 beta and truncated Stat1: interaction between NH2-terminal domains stabilizes binding of two dimers to tandem DNA sites. EMBO J 15:5616–5626
Demeler B (2005) UltraScan—a comprehensive data analysis software package for analytical ultracentrifugation experiments. In: Scott DJ, Harding SE, Rowe AJ (eds) Modern analytical ultracentrifugation: techniques and methods. Royal Society of Chemistry, UK, pp 210–229
UltraScan is freely available for download as source code (GPL) and binary packages for Windows, Linux and Macintosh platform.UltraScan-II: http://www.ultrascan2.uthscsa.edu/download.php; UltraScan-III: http://www.ultrascan3.uthscsa.edu/download.php. as source code (GPL) and binary packages for Windows, Linux and Macintosh platform
WinMATCH binary package for Windows can be freely downloaded at http://www.biotech.uconn.edu/auf/ftp/WINMATCH.ZIP (tested on October 4th, 2012).
Demeler B, Brookes E, Wang R, Schirf V, Kim CA (2010) Characterization of reversible associations by sedimentation velocity with UltraScan. Macromol Biosci 10:775–782
Bhattacharyya SK, Maciejewska P, Borger L, Stadler M, Gulsun AM, Cicek HB, Colfen H (2006) Development of fast fiber based UV-Vis multiwavelength detector for an ultracentrifuge. Prog Colloid Polym Sci 131:9–22
Strauss HM, Karabudak E, Bhattacharyya S, Kretzschmar A, Wohlleben W, Colfen H (2008) Performance of a fast fiber based UV/Vis multiwavelength detector for the analytical ultracentrifuge. Colloid Polym Sci 286:121–128
Cao W, Demeler B (2005) Modeling analytical ultracentrifugation experiments with an adaptive space-time finite element solution of the Lamm equation. Biophys J 89:1589–1602
Yphantis DA (1964) Equilibrium ultracentrifugation of dilute solutions. Biochemistry 3:297–317
van Holde KE, Weischet WO (1978) Boundary analysis of sedimentation velocity experiments with monodisperse and paucidisperse solutes. Biopolymers 17:1387–1403
Demeler B, van Holde KE (2004) Sedimentation velocity analysis of highly heterogeneous systems. Anal Biochem 335:279–288
Stafford WF 3rd (1992) Boundary analysis in sedimentation transport experiments: a procedure for obtaining sedimentation coefficient distributions using the time derivative of the concentration profile. Anal Biochem 203:295–301
Brookes E, Cao W, Demeler B (2009) A two-dimensional spectrum analysis for sedimentation velocity experiments of mixtures with heterogeneity in molecular weight and shape. Eur Biophys J 39:405–414
Brookes E, Demeler B (2006) Genetic algorithm optimization for obtaining accurate molecular weight distributions from sedimentation velocity experiments. Prog Colloid Polym Sci 131:33–40
Demeler B, Brookes E (2007) Monte Carlo analysis of sedimentation experiments. Prog Colloid Polym Sci 286:129–137
Acknowledgment
We thank Borries Demeler (University of Texas Health Science Center at San Antonio) for critical reading and comments. This work was supported by BBSRC grant BB/GO019290/1.
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Wenta, N., Vinkemeier, U. (2013). Characterization of STAT Self-Association by Analytical Ultracentrifugation. In: Nicholson, S., Nicola, N. (eds) JAK-STAT Signalling. Methods in Molecular Biology, vol 967. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-62703-242-1_15
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DOI: https://doi.org/10.1007/978-1-62703-242-1_15
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