Abstract
The potential of capillary electrophoresis-mass spectrometry (CE-MS) for metabolomics is demonstrated through the analysis of metabolites from human HT29 colon cancer cells treated and non-treated with dietary polyphenols. Prior to CE-MS analysis, four different metabolite purification strategies are investigated. Namely, the results obtained after methanol deproteinization, ultrafiltration, and two solid-phase extraction methods using C18 and polymer-based cartridges are described. These generic methods can have broad applications to analyze metabolites in a large variety of matrices and fields, including the new Foodomics area.
This is a preview of subscription content, log in via an institution.
Buying options
Tax calculation will be finalised at checkout
Purchases are for personal use only
Learn about institutional subscriptionsReferences
Reddy L, Odhav B, Bhoola KD (2003) Natural products for cancer prevention: a global perspective. Pharmacol Ther 99:1–13
Cifuentes A (2009) Food analysis and foodomics. J Chromatogr A 1216:7109
Garcia-Cañas V, Simó C, Leon C, Cifuentes A (2010) Advances in nutrigenomics research: novel and future analytical approaches to investigate the biological activity of natural compounds and food functions. J Pharm Biomed Anal 51:290–304
Ramautar R, Somsen GW, de Jong GJ (2009) CE-MS in metabolomics. Electrophoresis 30:276–291
Herrero M, Plaza M, Cifuentes A, Ibáñez E (2010) Green processes for the extraction of bioactives from Rosemary: chemical and functional characterization via ultra-performance liquid chromatography-tandem mass spectrometry and in-vitro assays. J Chromatogr A 1217:2512–2520
Wishart DS, Knox C, Guo AC, Eisner R, Young N, Gautam B et al (2009) HMDB: a knowledgebase for the human metabolome. Nucleic Acids Res 37:D603–D610
Smith CA, O’Maille G, Want EJ, Qin C, Trauger SA, Brandon TR et al (2005) METLIN: a metabolite mass spectral database. Ther Drug Monit 27:747–751
Kanehisa M, Goto S, Furumichi M, Tanabe M, Hirakawa M (2010) KEGG for representation and analysis of molecular networks involving diseases and drugs. Nucleic Acids Res 38:D355–D360
Kanehisa M, Goto S, Hattori M, Aoki-Kinoshita KF, Itoh M, Kawashima S et al (2006) From genomics to chemical genomics: new developments in KEGG. Nucleic Acids Res 34:D354–D357
Aoki-Kinoshita KF, Kanehisa M (2007) Gene annotation and pathway mapping in KEGG. Methods Mol Biol 396:71–91
Acknowledgments
This work was supported by AGL2008-05108-C03-01 (Ministerio de Ciencia e Innovación, Spain) and CSD2007-00063 FUN-C-FOOD projects (Programa CONSOLIDER, Ministerio de Educacion y Ciencia, Spain). MC thanks The Council of Higher Education, Turkey for his grant. CI thanks Ministerio de Educacion y Ciencia, Spain for her FPI grant.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2012 Springer Science+Business Media, LLC
About this protocol
Cite this protocol
Çelebier, M., Ibáñez, C., Simó, C., Cifuentes, A. (2012). A Foodomics Approach: CE-MS for Comparative Metabolomics of Colon Cancer Cells Treated with Dietary Polyphenols. In: Kurien, B., Scofield, R. (eds) Protein Electrophoresis. Methods in Molecular Biology, vol 869. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-61779-821-4_15
Download citation
DOI: https://doi.org/10.1007/978-1-61779-821-4_15
Published:
Publisher Name: Humana Press, Totowa, NJ
Print ISBN: 978-1-61779-820-7
Online ISBN: 978-1-61779-821-4
eBook Packages: Springer Protocols