Collection
Quantum and Classical Computational Methods in Photosynthesis - From the Atom to the Mesoscale (Special Issue)
- Submission status
- Closed
In recent years, the field of photosynthesis has flourished with a multitude of more and more accurate theoretical and computational methods. These tools have become central to our understanding of photosynthetic phenomena and their biology. Nowadays, computational methods can efficiently help experimentalists in interpreting spectroscopic, structural, and dynamical data from a well-grounded theoretical point of view.
In line with the ComPhot2021 meeting, the aim of this article collection is to explain cutting-edge computational methodologies to a broader audience and in an accessible way. Topics explored in the issue will include, but are not limited to, the following methods applied to natural and artificial photosynthetic systems:
- Quantum chemical and multiscale calculations of excited-state properties
- Theoretical description of optical spectroscopy and exciton dynamics
- Quantum-classical and classical calculations of structure and binding
- Molecular dynamics, from atomistic to coarse-grained models, and enhanced sampling techniques
This collection will feature invited reviews, original research, and technical communication articles.
Editors
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Lorenzo Cupellini
Dipartimento di Chimica e Chimica Industriale, Università di Pisa
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Nicoletta Liguori
ICFO- The Institute of Photonic Sciences Av. Carl Friedrich Gauss, num. 3 08860 Castelldefels (Barcelona), Spain Department of Physics and Astronomy, Vrije Universiteit Amsterdam
Articles (12 in this collection)
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Cyclic electron flow around photosystem II in silico: How it works and functions in vivo
Authors
- Apostolos Zournas
- Kyle Mani
- G. Charles Dismukes
- Content type: Original article
- Published: 08 February 2023
- Pages: 129 - 145
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Regulation of light energy conversion between linear and cyclic electron flow within photosystem II controlled by the plastoquinone/quinol redox poise
Authors (first, second and last of 5)
- Colin Gates
- Gennady Ananyev
- G. Charles Dismukes
- Content type: Original Article
- Published: 27 November 2022
- Pages: 113 - 128
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The location of the low-energy states in Lhca1 favors excitation energy transfer to the core in the plant PSI-LHCI supercomplex
Authors
- Vladimir I. Novoderezhkin
- Roberta Croce
- Content type: Original article
- Published: 14 November 2022
- Pages: 59 - 74
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Tools for analyzing protonation states and for tracing proton transfer pathways with examples from the Rb. sphaeroides photosynthetic reaction centers
Authors (first, second and last of 6)
- Rongmei Judy Wei
- Umesh Khaniya
- M. R. Gunner
- Content type: Original article
- Published: 29 October 2022
- Pages: 101 - 112
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Recent progress in atomistic modeling of light-harvesting complexes: a mini review
Authors
- Sayan Maity
- Ulrich Kleinekathöfer
- Content type: Review
- Open Access
- Published: 07 October 2022
- Pages: 147 - 162
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The role of the local environment on the structural heterogeneity of carotenoid β-ionone rings
Authors (first, second and last of 10)
- Roman Y. Pishchalnikov
- Igor A. Yaroshevich
- Eugene G. Maksimov
- Content type: Original article
- Published: 05 September 2022
- Pages: 3 - 17
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Signatures of intramolecular vibrational and vibronic Q\(_{\mathrm{x}}\)–Q\(_{\mathrm{y}}\) coupling effects in absorption and CD spectra of chlorophyll dimers
Authors
- Joachim Seibt
- Dominik Lindorfer
- Thomas Renger
- Content type: Original article
- Open Access
- Published: 30 August 2022
- Pages: 19 - 37
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Towards the description of charge transfer states in solubilised LHCII using subsystem DFT
Authors
- Souloke Sen
- Lucas Visscher
- Content type: Original article
- Open Access
- Published: 21 August 2022
- Pages: 39 - 57
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Predicting the oxidation states of Mn ions in the oxygen-evolving complex of photosystem II using supervised and unsupervised machine learning
Authors
- Muhamed Amin
- Content type: Original Article
- Open Access
- Published: 27 July 2022
- Pages: 89 - 100
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A perspective on the major light-harvesting complex dynamics under the effect of pH, salts, and the photoprotective PsbS protein
Authors
- Eleni Navakoudis
- Taxiarchis Stergiannakos
- Vangelis Daskalakis
- Content type: Review
- Open Access
- Published: 10 July 2022
- Pages: 163 - 177
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Quantum chemical elucidation of a sevenfold symmetric bacterial antenna complex
Authors (first, second and last of 5)
- Lorenzo Cupellini
- Pu Qian
- Richard J. Cogdell
- Content type: Original article
- Open Access
- Published: 08 June 2022
- Pages: 75 - 87