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Research in Computational Molecular Biology

14th Annual International Conference, RECOMB 2010, Lisbon, Portugal, April 25-28, 2010, Proceedings

  • Conference proceedings
  • © 2010

Overview

Editors:
  1. Bonnie Berger

    1. Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, USA

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  • Fast-track conference proceedings
  • State-of-the-art research
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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 6044)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

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Conference proceedings info: RECOMB 2010.

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Table of contents (42 papers)

  1. Front Matter

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  2. An Algorithmic Framework for Predicting Side-Effects of Drugs

    • Nir Atias, Roded Sharan
    Pages 1-14

  3. SubMAP: Aligning Metabolic Pathways with Subnetwork Mappings

    • Ferhat Ay, Tamer Kahveci
    Pages 15-30

  4. Admixture Aberration Analysis: Application to Mapping in Admixed Population Using Pooled DNA

    • Sivan Bercovici, Dan Geiger
    Pages 31-49

  5. Pathway-Based Functional Analysis of Metagenomes

    • Sivan Bercovici, Itai Sharon, Ron Y. Pinter, Tomer Shlomi
    Pages 50-64

  6. Hierarchical Generative Biclustering for MicroRNA Expression Analysis

    • José Caldas, Samuel Kaski
    Pages 65-79

  7. Subnetwork State Functions Define Dysregulated Subnetworks in Cancer

    • Salim A. Chowdhury, Rod K. Nibbe, Mark R. Chance, Mehmet Koyutürk
    Pages 80-95

  8. Proteome Coverage Prediction for Integrated Proteomics Datasets

    • Manfred Claassen, Ruedi Aebersold, Joachim M. Buhmann
    Pages 96-109

  9. Discovering Regulatory Overlapping RNA Transcripts

    • Timothy Danford, Robin Dowell, Sudeep Agarwala, Paula Grisafi, Gerald Fink, David Gifford
    Pages 110-122

  10. Alignment-Free Phylogenetic Reconstruction

    • Constantinos Daskalakis, Sebastien Roch
    Pages 123-137

  11. Inference of Isoforms from Short Sequence Reads

    • Jianxing Feng, Wei Li, Tao Jiang
    Pages 138-157

  12. The Clark Phase-able Sample Size Problem: Long-Range Phasing and Loss of Heterozygosity in GWAS

    • Bjarni V. Halldórsson, Derek Aguiar, Ryan Tarpine, Sorin Istrail
    Pages 158-173

  13. A New Algorithm for Improving the Resolution of Cryo-EM Density Maps

    • Michael Hirsch, Bernhard Schölkopf, Michael Habeck
    Pages 174-188

  14. Towards Automated Structure-Based NMR Resonance Assignment

    • Richard Jang, Xin Gao, Ming Li
    Pages 189-207

  15. Gapped Spectral Dictionaries and Their Applications for Database Searches of Tandem Mass Spectra

    • Kyowon Jeong, Sangtae Kim, Nuno Bandeira, Pavel A. Pevzner
    Pages 208-232

  16. naiveBayesCall: An Efficient Model-Based Base-Calling Algorithm for High-Throughput Sequencing

    • Wei-Chun Kao, Yun S. Song
    Pages 233-247

  17. Extracting Between-Pathway Models from E-MAP Interactions Using Expected Graph Compression

    • David R. Kelley, Carl Kingsford
    Pages 248-262

  18. Simultaneous Identification of Causal Genes and Dys-Regulated Pathways in Complex Diseases

    • Yoo-Ah Kim, Stefan Wuchty, Teresa M. Przytycka
    Pages 263-280

  19. Incremental Signaling Pathway Modeling by Data Integration

    • Geoffrey Koh, David Hsu, P. S. Thiagarajan
    Pages 281-296

  20. The Poisson Margin Test for Normalisation Free Significance Analysis of NGS Data

    • Adam Kowalczyk, Justin Bedo, Thomas Conway, Bryan Beresford-Smith
    Pages 297-309
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Other volumes

  1. Research in Computational Molecular Biology

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About this book

This volume contains the papers presented at RECOMB 2010: the 14th Annual International Conference on Research in Computational Molecular Biology held in Lisbon, Portugal, during April 25–28, 2010. The RECOMB conference series was started in 1997 by Sorin Istrail, Pavel Pevzner, and Michael Waterman. RECOMB 2010 was hosted by INESC-ID and Instituto Superior Tecnico, or- nized by a committee chaired by Arlindo Oliveira and took place at the Int- national Fair of Lisbon Meeting Centre. This year, 36 papers were accepted for presentation out of 176 submissions. The papers presented were selected by the Program Committee (PC) assisted by a number of external reviewers. Each paper was reviewed by three members of the PC, or by external reviewers, and there was an extensive Web-based discussion over a period of two weeks, leading to the ?nal decisions. RECOMB 2010 also introduced a Highlights Track, in which six additional presentations by senior authors were chosen from papers published in 2009. The RECOMB conferenceseriesiscloselyassociatedwiththeJournalofComputational Biology, which traditionally publishes special issues devoted to presenting full versions of selected conference papers.

Editors and Affiliations

  • Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, USA

    Bonnie Berger

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